Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 SNORD115-25-201ENST00000362619 82 ntBASIC-1.18□□□□□ -2.6
HLA-DMBP28068 RNU6-472P-201ENST00000384299 107 ntBASIC-1.18□□□□□ -2.6
HLA-DMBP28068 MIR518B-201ENST00000385127 83 ntBASIC-1.18□□□□□ -2.6
HLA-DMBP28068 RNU6-1307P-201ENST00000391012 103 ntBASIC-1.18□□□□□ -2.6
HLA-DMBP28068 RNU4-69P-201ENST00000410677 143 ntBASIC-1.18□□□□□ -2.6
HLA-DMBP28068 Z83846.1-201ENST00000446798 265 ntBASIC-1.18□□□□□ -2.6
HLA-DMBP28068 RNU6-287P-201ENST00000516230 98 ntBASIC-1.18□□□□□ -2.6
HLA-DMBP28068 MIR4499-201ENST00000584834 69 ntBASIC-1.18□□□□□ -2.6
HLA-DMBP28068 Y_RNA.64-201ENST00000362845 102 ntBASIC-1.19□□□□□ -2.6
HLA-DMBP28068 Y_RNA.299-201ENST00000364973 94 ntBASIC-1.19□□□□□ -2.6
HLA-DMBP28068 Y_RNA.328-201ENST00000365208 113 ntBASIC-1.19□□□□□ -2.6
HLA-DMBP28068 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.19□□□□□ -2.6
HLA-DMBP28068 IGHVII-40-1-201ENST00000517316 58 ntBASIC-1.19□□□□□ -2.6
HLA-DMBP28068 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC-1.19□□□□□ -2.6
HLA-DMBP28068 Y_RNA.31-201ENST00000362574 102 ntBASIC-1.2□□□□□ -2.6
HLA-DMBP28068 Y_RNA.133-201ENST00000363428 110 ntBASIC-1.2□□□□□ -2.6
HLA-DMBP28068 Y_RNA.342-201ENST00000365352 113 ntBASIC-1.2□□□□□ -2.6
HLA-DMBP28068 Y_RNA.785-201ENST00000384290 109 ntBASIC-1.2□□□□□ -2.6
HLA-DMBP28068 SNORD2.1-201ENST00000458762 69 ntBASIC-1.2□□□□□ -2.6
HLA-DMBP28068 RNU2-4P-201ENST00000606190 192 ntBASIC-1.2□□□□□ -2.6
HLA-DMBP28068 MIR198-201ENST00000637333 62 ntBASIC-1.2□□□□□ -2.6
HLA-DMBP28068 Y_RNA.52-201ENST00000362760 96 ntBASIC-1.21□□□□□ -2.6
HLA-DMBP28068 Y_RNA.189-201ENST00000363959 112 ntBASIC-1.21□□□□□ -2.6
HLA-DMBP28068 RNU6-973P-201ENST00000364690 107 ntBASIC-1.21□□□□□ -2.6
HLA-DMBP28068 RNU6-690P-201ENST00000365242 106 ntBASIC-1.21□□□□□ -2.6
HLA-DMBP28068 MIR517B-201ENST00000385102 67 ntBASIC-1.21□□□□□ -2.6
HLA-DMBP28068 MIR1468-201ENST00000410600 86 ntBASIC-1.21□□□□□ -2.6
HLA-DMBP28068 SERF1AP1-201ENST00000514575 187 ntBASIC-1.21□□□□□ -2.6
HLA-DMBP28068 RNU7-2P-201ENST00000516096 62 ntBASIC-1.21□□□□□ -2.6
HLA-DMBP28068 RNA5SP236-201ENST00000516169 116 ntBASIC-1.21□□□□□ -2.6
HLA-DMBP28068 RNA5SP470-201ENST00000516463 106 ntBASIC-1.21□□□□□ -2.6
HLA-DMBP28068 RNU6-850P-201ENST00000516934 103 ntBASIC-1.21□□□□□ -2.6
HLA-DMBP28068 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC-1.21□□□□□ -2.6
HLA-DMBP28068 MIR378F-201ENST00000578143 78 ntBASIC-1.21□□□□□ -2.6
HLA-DMBP28068 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC-1.21□□□□□ -2.6
HLA-DMBP28068 AC073869.6-201ENST00000640656 341 ntBASIC-1.21□□□□□ -2.6
HLA-DMBP28068 Y_RNA.117-201ENST00000363294 101 ntBASIC-1.22□□□□□ -2.6
HLA-DMBP28068 Y_RNA.215-201ENST00000364204 112 ntBASIC-1.22□□□□□ -2.6
HLA-DMBP28068 Y_RNA.318-201ENST00000365131 97 ntBASIC-1.22□□□□□ -2.6
HLA-DMBP28068 Y_RNA.389-201ENST00000383924 113 ntBASIC-1.22□□□□□ -2.6
HLA-DMBP28068 RNU6-876P-201ENST00000391295 104 ntBASIC-1.22□□□□□ -2.6
HLA-DMBP28068 AC016907.1-201ENST00000419483 435 ntBASIC-1.22□□□□□ -2.6
HLA-DMBP28068 SNORD19B-201ENST00000459623 84 ntBASIC-1.22□□□□□ -2.6
HLA-DMBP28068 SNORD22.1-201ENST00000516331 125 ntBASIC-1.22□□□□□ -2.6
HLA-DMBP28068 AC140658.3-201ENST00000567603 271 ntBASIC-1.22□□□□□ -2.6
HLA-DMBP28068 MIR376B-201ENST00000614515 100 ntBASIC-1.22□□□□□ -2.6
HLA-DMBP28068 Y_RNA.16-201ENST00000362421 102 ntBASIC-1.23□□□□□ -2.61
HLA-DMBP28068 RNU6-103P-201ENST00000363686 107 ntBASIC-1.23□□□□□ -2.61
HLA-DMBP28068 RNU6-1163P-201ENST00000364516 107 ntBASIC-1.23□□□□□ -2.61
HLA-DMBP28068 Y_RNA.447-201ENST00000384184 113 ntBASIC-1.23□□□□□ -2.61
HLA-DMBP28068 MIR516A2-201ENST00000384888 90 ntBASIC-1.23□□□□□ -2.61
HLA-DMBP28068 MIR516A1-201ENST00000385033 90 ntBASIC-1.23□□□□□ -2.61
HLA-DMBP28068 MIR1252-201ENST00000408861 65 ntBASIC-1.23□□□□□ -2.61
HLA-DMBP28068 SNORD2-201ENST00000459163 69 ntBASIC-1.23□□□□□ -2.61
HLA-DMBP28068 Y_RNA.632-201ENST00000459189 102 ntBASIC-1.23□□□□□ -2.61
HLA-DMBP28068 AC022137.1-201ENST00000483735 151 ntBASIC-1.23□□□□□ -2.61
HLA-DMBP28068 AC087741.2-201ENST00000619415 172 ntBASIC-1.23□□□□□ -2.61
HLA-DMBP28068 U4.1-201ENST00000620349 87 ntBASIC-1.23□□□□□ -2.61
HLA-DMBP28068 MIR1302-1-201ENST00000637932 143 ntBASIC-1.23□□□□□ -2.61
HLA-DMBP28068 Y_RNA.12-201ENST00000362393 112 ntBASIC-1.24□□□□□ -2.61
HLA-DMBP28068 Y_RNA.82-201ENST00000363000 102 ntBASIC-1.24□□□□□ -2.61
HLA-DMBP28068 Y_RNA.92-201ENST00000363043 102 ntBASIC-1.24□□□□□ -2.61
HLA-DMBP28068 Y_RNA.235-201ENST00000364412 102 ntBASIC-1.24□□□□□ -2.61
HLA-DMBP28068 Y_RNA.306-201ENST00000365015 102 ntBASIC-1.24□□□□□ -2.61
HLA-DMBP28068 Y_RNA.312-201ENST00000365089 102 ntBASIC-1.24□□□□□ -2.61
HLA-DMBP28068 Y_RNA.322-201ENST00000365151 102 ntBASIC-1.24□□□□□ -2.61
HLA-DMBP28068 RNU6-24P-201ENST00000384440 107 ntBASIC-1.24□□□□□ -2.61
HLA-DMBP28068 SNORD77B-201ENST00000391112 67 ntBASIC-1.24□□□□□ -2.61
HLA-DMBP28068 AL589823.1-201ENST00000429577 183 ntBASIC-1.24□□□□□ -2.61
HLA-DMBP28068 Y_RNA.650-201ENST00000459002 102 ntBASIC-1.24□□□□□ -2.61
HLA-DMBP28068 Y_RNA.777-201ENST00000516982 102 ntBASIC-1.24□□□□□ -2.61
HLA-DMBP28068 Y_RNA.771-201ENST00000598668 102 ntBASIC-1.24□□□□□ -2.61
HLA-DMBP28068 AC009779.6-201ENST00000603972 165 ntBASIC-1.24□□□□□ -2.61
HLA-DMBP28068 Y_RNA.789-201ENST00000622480 102 ntBASIC-1.24□□□□□ -2.61
HLA-DMBP28068 RNA5SP192-201ENST00000364404 120 ntBASIC-1.25□□□□□ -2.61
HLA-DMBP28068 RNU6-823P-201ENST00000391042 103 ntBASIC-1.25□□□□□ -2.61
HLA-DMBP28068 Y_RNA.645-201ENST00000391229 102 ntBASIC-1.25□□□□□ -2.61
HLA-DMBP28068 AP000533.3-201ENST00000447704 118 ntBASIC-1.25□□□□□ -2.61
HLA-DMBP28068 SCARNA17.3-201ENST00000516381 125 ntBASIC-1.25□□□□□ -2.61
HLA-DMBP28068 Evf-2_5p.1-201ENST00000614213 142 ntBASIC-1.25□□□□□ -2.61
HLA-DMBP28068 Y_RNA.70-201ENST00000362886 110 ntBASIC-1.26□□□□□ -2.61
HLA-DMBP28068 RNU6-770P-201ENST00000363929 105 ntBASIC-1.26□□□□□ -2.61
HLA-DMBP28068 Y_RNA.207-201ENST00000364142 106 ntBASIC-1.26□□□□□ -2.61
HLA-DMBP28068 Y_RNA.220-201ENST00000364244 109 ntBASIC-1.26□□□□□ -2.61
HLA-DMBP28068 SNORD74.6-201ENST00000364796 70 ntBASIC-1.26□□□□□ -2.61
HLA-DMBP28068 SNORD115-35-201ENST00000365122 82 ntBASIC-1.26□□□□□ -2.61
HLA-DMBP28068 RNU4-17P-201ENST00000365598 141 ntBASIC-1.26□□□□□ -2.61
HLA-DMBP28068 SNORD116-4-201ENST00000384733 96 ntBASIC-1.26□□□□□ -2.61
HLA-DMBP28068 MIR601-201ENST00000385256 79 ntBASIC-1.26□□□□□ -2.61
HLA-DMBP28068 Y_RNA.596-201ENST00000410462 109 ntBASIC-1.26□□□□□ -2.61
HLA-DMBP28068 AL121914.1-201ENST00000450188 156 ntBASIC-1.26□□□□□ -2.61
HLA-DMBP28068 SCARNA18B-201ENST00000458806 135 ntBASIC-1.26□□□□□ -2.61
HLA-DMBP28068 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC-1.26□□□□□ -2.61
HLA-DMBP28068 MIR3165-201ENST00000579874 75 ntBASIC-1.26□□□□□ -2.61
HLA-DMBP28068 AL132765.2-201ENST00000610812 351 ntBASIC-1.26□□□□□ -2.61
HLA-DMBP28068 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC-1.26□□□□□ -2.61
HLA-DMBP28068 AL365265.1-201ENST00000621045 234 ntBASIC-1.26□□□□□ -2.61
HLA-DMBP28068 TRDV1-202ENST00000621643 102 ntBASIC-1.26□□□□□ -2.61
HLA-DMBP28068 Y_RNA.315-201ENST00000365117 102 ntBASIC-1.27□□□□□ -2.61
HLA-DMBP28068 RN7SKP19-201ENST00000516016 252 ntBASIC-1.27□□□□□ -2.61
Retrieved 100 of 98,524 protein–RNA pairs in 114.1 ms