Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 RNU7-2P-201ENST00000516096 62 ntBASIC-0.02□□□□□ -2.41
SDC1P18827 RNU6-388P-201ENST00000517012 105 ntBASIC-0.02□□□□□ -2.41
SDC1P18827 RNU6-389P-201ENST00000517048 105 ntBASIC-0.02□□□□□ -2.41
SDC1P18827 RNU7-10P-201ENST00000607194 63 ntBASIC-0.02□□□□□ -2.41
SDC1P18827 MIR8087-201ENST00000612745 78 ntBASIC-0.02□□□□□ -2.41
SDC1P18827 AP001362.1-201ENST00000625165 124 ntBASIC-0.02□□□□□ -2.41
SDC1P18827 MIR499B-201ENST00000636498 73 ntBASIC-0.02□□□□□ -2.41
SDC1P18827 MIR330-201ENST00000362196 94 ntBASIC-0.03□□□□□ -2.41
SDC1P18827 SNORD114-16-201ENST00000363044 70 ntBASIC-0.03□□□□□ -2.41
SDC1P18827 Y_RNA.98-201ENST00000363109 102 ntBASIC-0.03□□□□□ -2.41
SDC1P18827 Y_RNA.272-201ENST00000364696 102 ntBASIC-0.03□□□□□ -2.41
SDC1P18827 RNU6-449P-201ENST00000383914 107 ntBASIC-0.03□□□□□ -2.41
SDC1P18827 RNU6-616P-201ENST00000384353 107 ntBASIC-0.03□□□□□ -2.41
SDC1P18827 MIR635-201ENST00000384830 98 ntBASIC-0.03□□□□□ -2.41
SDC1P18827 BX276092.1-201ENST00000427368 251 ntBASIC-0.03□□□□□ -2.41
SDC1P18827 Y_RNA.662-201ENST00000516028 97 ntBASIC-0.03□□□□□ -2.41
SDC1P18827 SNORA70.25-201ENST00000612741 95 ntBASIC-0.03□□□□□ -2.41
SDC1P18827 Y_RNA.127-201ENST00000363386 109 ntBASIC-0.04□□□□□ -2.42
SDC1P18827 Y_RNA.221-201ENST00000364248 96 ntBASIC-0.04□□□□□ -2.42
SDC1P18827 Y_RNA.552-201ENST00000384665 112 ntBASIC-0.04□□□□□ -2.42
SDC1P18827 MIR599-201ENST00000385069 95 ntBASIC-0.04□□□□□ -2.42
SDC1P18827 RNU7-197P-201ENST00000458836 62 ntBASIC-0.04□□□□□ -2.42
SDC1P18827 AC074198.2-201ENST00000508153 258 ntBASIC-0.04□□□□□ -2.42
SDC1P18827 AC067863.3-201ENST00000624172 122 ntBASIC-0.04□□□□□ -2.42
SDC1P18827 Y_RNA.328-201ENST00000365208 113 ntBASIC-0.05□□□□□ -2.42
SDC1P18827 Y_RNA.401-201ENST00000383965 117 ntBASIC-0.05□□□□□ -2.42
SDC1P18827 MIR610-201ENST00000385139 96 ntBASIC-0.05□□□□□ -2.42
SDC1P18827 MT-TG-201ENST00000387429 68 ntBASIC-0.05□□□□□ -2.42
SDC1P18827 MIR501-201ENST00000390204 84 ntBASIC-0.05□□□□□ -2.42
SDC1P18827 SNORD41.1-201ENST00000391000 69 ntBASIC-0.05□□□□□ -2.42
SDC1P18827 RNU6-460P-201ENST00000391158 108 ntBASIC-0.05□□□□□ -2.42
SDC1P18827 MIR1197-201ENST00000408818 88 ntBASIC-0.05□□□□□ -2.42
SDC1P18827 MIR548H2-201ENST00000408874 88 ntBASIC-0.05□□□□□ -2.42
SDC1P18827 AC097635.1-201ENST00000450678 155 ntBASIC-0.05□□□□□ -2.42
SDC1P18827 RNA5SP480-201ENST00000516840 109 ntBASIC-0.05□□□□□ -2.42
SDC1P18827 RNA5SP325-201ENST00000363756 130 ntBASIC-0.06□□□□□ -2.42
SDC1P18827 RNU6-865P-201ENST00000364772 107 ntBASIC-0.06□□□□□ -2.42
SDC1P18827 SNORD115-35-201ENST00000365122 82 ntBASIC-0.06□□□□□ -2.42
SDC1P18827 RNA5SP63-201ENST00000391225 112 ntBASIC-0.06□□□□□ -2.42
SDC1P18827 IGKV1-22-201ENST00000524313 326 ntBASIC-0.06□□□□□ -2.42
SDC1P18827 MIR4290-201ENST00000583807 95 ntBASIC-0.06□□□□□ -2.42
SDC1P18827 MIR4768-201ENST00000585270 74 ntBASIC-0.06□□□□□ -2.42
SDC1P18827 MIR376B-201ENST00000614515 100 ntBASIC-0.06□□□□□ -2.42
SDC1P18827 Y_RNA.29-201ENST00000362570 113 ntBASIC-0.07□□□□□ -2.42
SDC1P18827 SNORD114-26-201ENST00000363543 72 ntBASIC-0.07□□□□□ -2.42
SDC1P18827 Y_RNA.205-201ENST00000364128 113 ntBASIC-0.07□□□□□ -2.42
SDC1P18827 MIR593-201ENST00000384856 100 ntBASIC-0.07□□□□□ -2.42
SDC1P18827 MIR145-201ENST00000384967 88 ntBASIC-0.07□□□□□ -2.42
SDC1P18827 RNU6-269P-201ENST00000391077 97 ntBASIC-0.07□□□□□ -2.42
SDC1P18827 MIR548I2-201ENST00000408348 149 ntBASIC-0.07□□□□□ -2.42
SDC1P18827 RNU6-782P-201ENST00000516852 104 ntBASIC-0.07□□□□□ -2.42
SDC1P18827 AC087741.2-201ENST00000619415 172 ntBASIC-0.07□□□□□ -2.42
SDC1P18827 RNU6-151P-201ENST00000364158 107 ntBASIC-0.08□□□□□ -2.42
SDC1P18827 RNU6-915P-201ENST00000364943 103 ntBASIC-0.08□□□□□ -2.42
SDC1P18827 RNU6-1130P-201ENST00000365434 107 ntBASIC-0.08□□□□□ -2.42
SDC1P18827 MT-TI-201ENST00000387365 69 ntBASIC-0.08□□□□□ -2.42
SDC1P18827 Y_RNA.660-201ENST00000516002 120 ntBASIC-0.08□□□□□ -2.42
SDC1P18827 Y_RNA.700-201ENST00000516806 100 ntBASIC-0.08□□□□□ -2.42
SDC1P18827 SNORA81.3-201ENST00000517283 198 ntBASIC-0.08□□□□□ -2.42
SDC1P18827 MIR3121-201ENST00000579680 77 ntBASIC-0.08□□□□□ -2.42
SDC1P18827 AC004792.1-201ENST00000614523 137 ntBASIC-0.08□□□□□ -2.42
SDC1P18827 Y_RNA.778-201ENST00000620203 90 ntBASIC-0.08□□□□□ -2.42
SDC1P18827 MIR519A1-201ENST00000385257 85 ntBASIC-0.09□□□□□ -2.42
SDC1P18827 SNORD63B-201ENST00000411005 70 ntBASIC-0.09□□□□□ -2.42
SDC1P18827 RNU7-195P-201ENST00000458793 62 ntBASIC-0.09□□□□□ -2.42
SDC1P18827 RNU6-1265P-201ENST00000516342 103 ntBASIC-0.09□□□□□ -2.42
SDC1P18827 RNU7-6P-201ENST00000516845 62 ntBASIC-0.09□□□□□ -2.42
SDC1P18827 RNA5SP330-201ENST00000517096 96 ntBASIC-0.09□□□□□ -2.42
SDC1P18827 MIR5706-201ENST00000579841 80 ntBASIC-0.09□□□□□ -2.42
SDC1P18827 RNU6-170P-201ENST00000362832 104 ntBASIC-0.1□□□□□ -2.43
SDC1P18827 Y_RNA.258-201ENST00000364613 105 ntBASIC-0.1□□□□□ -2.43
SDC1P18827 MIR34C-201ENST00000384831 77 ntBASIC-0.1□□□□□ -2.43
SDC1P18827 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.1□□□□□ -2.43
SDC1P18827 MIR5190-201ENST00000581537 80 ntBASIC-0.1□□□□□ -2.43
SDC1P18827 MIR548AD-201ENST00000584780 82 ntBASIC-0.1□□□□□ -2.43
SDC1P18827 uc_338.28-201ENST00000612082 187 ntBASIC-0.1□□□□□ -2.43
SDC1P18827 AC073869.9-201ENST00000641610 120 ntBASIC-0.1□□□□□ -2.43
SDC1P18827 Y_RNA.785-201ENST00000384290 109 ntBASIC-0.11□□□□□ -2.43
SDC1P18827 Y_RNA.809-201ENST00000516058 95 ntBASIC-0.11□□□□□ -2.43
SDC1P18827 Y_RNA.692-201ENST00000516627 105 ntBASIC-0.11□□□□□ -2.43
SDC1P18827 MIR4743-201ENST00000584576 69 ntBASIC-0.11□□□□□ -2.43
SDC1P18827 Y_RNA.773-201ENST00000607168 90 ntBASIC-0.11□□□□□ -2.43
SDC1P18827 MIR371B-201ENST00000638082 66 ntBASIC-0.11□□□□□ -2.43
SDC1P18827 RNU6-161P-201ENST00000363051 106 ntBASIC-0.12□□□□□ -2.43
SDC1P18827 SNORD115-19-201ENST00000363098 82 ntBASIC-0.12□□□□□ -2.43
SDC1P18827 SNORD115-18-201ENST00000363293 82 ntBASIC-0.12□□□□□ -2.43
SDC1P18827 SNORD115-17-201ENST00000364612 82 ntBASIC-0.12□□□□□ -2.43
SDC1P18827 Y_RNA.323-201ENST00000365157 109 ntBASIC-0.12□□□□□ -2.43
SDC1P18827 Y_RNA.360-201ENST00000365512 102 ntBASIC-0.12□□□□□ -2.43
SDC1P18827 SNORD116-18-201ENST00000383961 92 ntBASIC-0.12□□□□□ -2.43
SDC1P18827 RNU6-571P-201ENST00000384128 107 ntBASIC-0.12□□□□□ -2.43
SDC1P18827 Y_RNA.580-201ENST00000391004 95 ntBASIC-0.12□□□□□ -2.43
SDC1P18827 AC141557.1-201ENST00000540982 400 ntBASIC-0.12□□□□□ -2.43
SDC1P18827 MIR3163-201ENST00000581592 73 ntBASIC-0.12□□□□□ -2.43
SDC1P18827 Y_RNA.114-201ENST00000363265 113 ntBASIC-0.13□□□□□ -2.43
SDC1P18827 Y_RNA.257-201ENST00000364596 102 ntBASIC-0.13□□□□□ -2.43
SDC1P18827 Y_RNA.540-201ENST00000384638 111 ntBASIC-0.13□□□□□ -2.43
SDC1P18827 MIR892B-201ENST00000401279 77 ntBASIC-0.13□□□□□ -2.43
SDC1P18827 RNU6ATAC41P-201ENST00000408600 126 ntBASIC-0.13□□□□□ -2.43
SDC1P18827 RNU6-394P-201ENST00000410735 107 ntBASIC-0.13□□□□□ -2.43
Retrieved 100 of 98,524 protein–RNA pairs in 308 ms