Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 Y_RNA.220-201ENST00000364244 109 ntBASIC-1.73□□□□□ -2.69
APOEP02649 RNU6-690P-201ENST00000365242 106 ntBASIC-1.73□□□□□ -2.69
APOEP02649 RNU6-1289P-201ENST00000384431 106 ntBASIC-1.73□□□□□ -2.69
APOEP02649 RNU6-476P-201ENST00000384726 107 ntBASIC-1.73□□□□□ -2.69
APOEP02649 RNU4-43P-201ENST00000410628 137 ntBASIC-1.73□□□□□ -2.69
APOEP02649 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC-1.73□□□□□ -2.69
APOEP02649 RNU7-2P-201ENST00000516096 62 ntBASIC-1.73□□□□□ -2.69
APOEP02649 MIR8068-201ENST00000618032 68 ntBASIC-1.73□□□□□ -2.69
APOEP02649 snoU2_19.2-201ENST00000363024 80 ntBASIC-1.74□□□□□ -2.69
APOEP02649 RNU4-24P-201ENST00000364565 139 ntBASIC-1.74□□□□□ -2.69
APOEP02649 Y_RNA.283-201ENST00000364798 112 ntBASIC-1.74□□□□□ -2.69
APOEP02649 Y_RNA.357-201ENST00000365487 109 ntBASIC-1.74□□□□□ -2.69
APOEP02649 MIR147A-201ENST00000385079 72 ntBASIC-1.74□□□□□ -2.69
APOEP02649 RNA5SP266-201ENST00000410273 108 ntBASIC-1.74□□□□□ -2.69
APOEP02649 AL161932.1-201ENST00000437408 146 ntBASIC-1.74□□□□□ -2.69
APOEP02649 Y_RNA.659-201ENST00000515994 113 ntBASIC-1.74□□□□□ -2.69
APOEP02649 SCARNA17.3-201ENST00000516381 125 ntBASIC-1.74□□□□□ -2.69
APOEP02649 RNU6-706P-201ENST00000517229 104 ntBASIC-1.74□□□□□ -2.69
APOEP02649 Evf-2_5p.1-201ENST00000614213 142 ntBASIC-1.74□□□□□ -2.69
APOEP02649 MIR6854-201ENST00000614935 69 ntBASIC-1.74□□□□□ -2.69
APOEP02649 Y_RNA.117-201ENST00000363294 101 ntBASIC-1.75□□□□□ -2.69
APOEP02649 Y_RNA.187-201ENST00000363918 113 ntBASIC-1.75□□□□□ -2.69
APOEP02649 Y_RNA.389-201ENST00000383924 113 ntBASIC-1.75□□□□□ -2.69
APOEP02649 Y_RNA.447-201ENST00000384184 113 ntBASIC-1.75□□□□□ -2.69
APOEP02649 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC-1.75□□□□□ -2.69
APOEP02649 AC087741.2-201ENST00000619415 172 ntBASIC-1.75□□□□□ -2.69
APOEP02649 TRDV1-202ENST00000621643 102 ntBASIC-1.75□□□□□ -2.69
APOEP02649 U6.100-201ENST00000636230 99 ntBASIC-1.75□□□□□ -2.69
APOEP02649 Y_RNA.207-201ENST00000364142 106 ntBASIC-1.76□□□□□ -2.69
APOEP02649 Y_RNA.387-201ENST00000383918 102 ntBASIC-1.76□□□□□ -2.69
APOEP02649 RNU6-472P-201ENST00000384299 107 ntBASIC-1.76□□□□□ -2.69
APOEP02649 Y_RNA.583-201ENST00000391033 113 ntBASIC-1.76□□□□□ -2.69
APOEP02649 RNU6-1250P-201ENST00000391218 107 ntBASIC-1.76□□□□□ -2.69
APOEP02649 SNORD57-201ENST00000448188 72 ntBASIC-1.76□□□□□ -2.69
APOEP02649 Y_RNA.514-201ENST00000384528 112 ntBASIC-1.77□□□□□ -2.69
APOEP02649 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC-1.77□□□□□ -2.69
APOEP02649 AC090574.1-201ENST00000623186 233 ntBASIC-1.77□□□□□ -2.69
APOEP02649 Y_RNA.16-201ENST00000362421 102 ntBASIC-1.78□□□□□ -2.69
APOEP02649 SNORD116-6-201ENST00000384711 96 ntBASIC-1.78□□□□□ -2.69
APOEP02649 RNU6-381P-201ENST00000391259 108 ntBASIC-1.78□□□□□ -2.69
APOEP02649 MIR1302-11-201ENST00000408051 138 ntBASIC-1.78□□□□□ -2.69
APOEP02649 MIR1302-9-201ENST00000408365 138 ntBASIC-1.78□□□□□ -2.69
APOEP02649 MIR1302-10-201ENST00000408734 138 ntBASIC-1.78□□□□□ -2.69
APOEP02649 Y_RNA.596-201ENST00000410462 109 ntBASIC-1.78□□□□□ -2.69
APOEP02649 AC097510.1-201ENST00000510945 133 ntBASIC-1.78□□□□□ -2.69
APOEP02649 MIR1302-2-201ENST00000607096 138 ntBASIC-1.78□□□□□ -2.69
APOEP02649 Y_RNA.64-201ENST00000362845 102 ntBASIC-1.79□□□□□ -2.7
APOEP02649 Y_RNA.214-201ENST00000364201 112 ntBASIC-1.79□□□□□ -2.7
APOEP02649 SNORD74.6-201ENST00000364796 70 ntBASIC-1.79□□□□□ -2.7
APOEP02649 Y_RNA.299-201ENST00000364973 94 ntBASIC-1.79□□□□□ -2.7
APOEP02649 MIR582-201ENST00000365731 98 ntBASIC-1.79□□□□□ -2.7
APOEP02649 Y_RNA.437-201ENST00000384113 113 ntBASIC-1.79□□□□□ -2.7
APOEP02649 RNU7-152P-201ENST00000458982 64 ntBASIC-1.79□□□□□ -2.7
APOEP02649 IGHVII-40-1-201ENST00000517316 58 ntBASIC-1.79□□□□□ -2.7
APOEP02649 Y_RNA.275-201ENST00000364726 110 ntBASIC-1.8□□□□□ -2.7
APOEP02649 SNORD77B-201ENST00000391112 67 ntBASIC-1.8□□□□□ -2.7
APOEP02649 SNORD2-201ENST00000459163 69 ntBASIC-1.8□□□□□ -2.7
APOEP02649 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC-1.8□□□□□ -2.7
APOEP02649 SNORA63.7-201ENST00000365579 123 ntBASIC-1.81□□□□□ -2.7
APOEP02649 SNORD116-2-201ENST00000384274 95 ntBASIC-1.81□□□□□ -2.7
APOEP02649 RNU6-905P-201ENST00000384434 107 ntBASIC-1.81□□□□□ -2.7
APOEP02649 AL121914.1-201ENST00000450188 156 ntBASIC-1.81□□□□□ -2.7
APOEP02649 RNU7-164P-201ENST00000459221 62 ntBASIC-1.81□□□□□ -2.7
APOEP02649 AC021443.1-201ENST00000604478 211 ntBASIC-1.81□□□□□ -2.7
APOEP02649 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC-1.81□□□□□ -2.7
APOEP02649 Y_RNA.601-201ENST00000410500 113 ntBASIC-1.82□□□□□ -2.7
APOEP02649 RNU7-123P-201ENST00000515911 60 ntBASIC-1.82□□□□□ -2.7
APOEP02649 RNU6-240P-201ENST00000516098 97 ntBASIC-1.82□□□□□ -2.7
APOEP02649 RNA5SP236-201ENST00000516169 116 ntBASIC-1.82□□□□□ -2.7
APOEP02649 RNU6-277P-201ENST00000516272 106 ntBASIC-1.82□□□□□ -2.7
APOEP02649 Y_RNA.52-201ENST00000362760 96 ntBASIC-1.83□□□□□ -2.7
APOEP02649 Y_RNA.360-201ENST00000365512 102 ntBASIC-1.83□□□□□ -2.7
APOEP02649 RNU6-616P-201ENST00000384353 107 ntBASIC-1.83□□□□□ -2.7
APOEP02649 Y_RNA.556-201ENST00000384677 113 ntBASIC-1.83□□□□□ -2.7
APOEP02649 MIR34C-201ENST00000384831 77 ntBASIC-1.83□□□□□ -2.7
APOEP02649 RNU6-1254P-201ENST00000391266 104 ntBASIC-1.83□□□□□ -2.7
APOEP02649 MIR548E-201ENST00000408287 88 ntBASIC-1.83□□□□□ -2.7
APOEP02649 RNU6-976P-201ENST00000516086 111 ntBASIC-1.83□□□□□ -2.7
APOEP02649 RNU6-762P-201ENST00000517107 102 ntBASIC-1.83□□□□□ -2.7
APOEP02649 snoU83B.1-201ENST00000517136 88 ntBASIC-1.83□□□□□ -2.7
APOEP02649 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC-1.83□□□□□ -2.7
APOEP02649 SNORD27-201ENST00000363981 72 ntBASIC-1.84□□□□□ -2.7
APOEP02649 Y_RNA.384-201ENST00000383909 102 ntBASIC-1.84□□□□□ -2.7
APOEP02649 RNU6-1215P-201ENST00000384441 102 ntBASIC-1.84□□□□□ -2.7
APOEP02649 RNU6-651P-201ENST00000411040 105 ntBASIC-1.84□□□□□ -2.7
APOEP02649 SERF1AP1-201ENST00000514575 187 ntBASIC-1.84□□□□□ -2.7
APOEP02649 AC138907.4-201ENST00000570107 226 ntBASIC-1.84□□□□□ -2.7
APOEP02649 MIR548O2-201ENST00000616090 70 ntBASIC-1.84□□□□□ -2.7
APOEP02649 RNA5SP331-201ENST00000364986 107 ntBASIC-1.85□□□□□ -2.71
APOEP02649 Y_RNA.495-201ENST00000384435 112 ntBASIC-1.85□□□□□ -2.71
APOEP02649 SCARNA24.2-201ENST00000516968 130 ntBASIC-1.85□□□□□ -2.71
APOEP02649 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC-1.85□□□□□ -2.71
APOEP02649 AC138207.3-201ENST00000585289 166 ntBASIC-1.85□□□□□ -2.71
APOEP02649 Y_RNA.239-201ENST00000364444 113 ntBASIC-1.86□□□□□ -2.71
APOEP02649 RNU6-243P-201ENST00000391140 107 ntBASIC-1.86□□□□□ -2.71
APOEP02649 AL353813.1-201ENST00000440700 253 ntBASIC-1.86□□□□□ -2.71
APOEP02649 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC-1.86□□□□□ -2.71
APOEP02649 AL442663.2-201ENST00000554385 511 ntBASIC-1.86□□□□□ -2.71
APOEP02649 RNU6-450P-201ENST00000364654 107 ntBASIC-1.87□□□□□ -2.71
APOEP02649 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.87□□□□□ -2.71
Retrieved 100 of 98,524 protein–RNA pairs in 182.2 ms