Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 RNU6-392P-201ENST00000364926 101 ntBASIC1.03□□□□□ -2.24
LDB3O75112 RNU6ATAC41P-201ENST00000408600 126 ntBASIC1.03□□□□□ -2.24
LDB3O75112 SPINT5P-201ENST00000448174 155 ntBASIC1.03□□□□□ -2.24
LDB3O75112 MIR4500-201ENST00000579472 76 ntBASIC1.03□□□□□ -2.24
LDB3O75112 AC012676.2-201ENST00000619258 186 ntBASIC1.03□□□□□ -2.24
LDB3O75112 RNU1-36P-201ENST00000365130 165 ntBASIC1.02□□□□□ -2.25
LDB3O75112 Y_RNA.388-201ENST00000383919 113 ntBASIC1.02□□□□□ -2.25
LDB3O75112 RNU6-813P-201ENST00000384691 107 ntBASIC1.02□□□□□ -2.25
LDB3O75112 MIR19B1-201ENST00000384829 87 ntBASIC1.02□□□□□ -2.25
LDB3O75112 MT-TF-201ENST00000387314 71 ntBASIC1.02□□□□□ -2.25
LDB3O75112 Y_RNA.593-201ENST00000410292 98 ntBASIC1.02□□□□□ -2.25
LDB3O75112 RNU6-447P-201ENST00000410293 104 ntBASIC1.02□□□□□ -2.25
LDB3O75112 RNU6-1118P-201ENST00000410382 104 ntBASIC1.02□□□□□ -2.25
LDB3O75112 RNU6-1076P-201ENST00000410397 104 ntBASIC1.02□□□□□ -2.25
LDB3O75112 RNU6-355P-201ENST00000410427 104 ntBASIC1.02□□□□□ -2.25
LDB3O75112 RNU6-791P-201ENST00000410467 104 ntBASIC1.02□□□□□ -2.25
LDB3O75112 RNU6-705P-201ENST00000410601 104 ntBASIC1.02□□□□□ -2.25
LDB3O75112 RNU6-1100P-201ENST00000410691 104 ntBASIC1.02□□□□□ -2.25
LDB3O75112 RNU6-860P-201ENST00000410860 104 ntBASIC1.02□□□□□ -2.25
LDB3O75112 RNU6-1217P-201ENST00000411276 104 ntBASIC1.02□□□□□ -2.25
LDB3O75112 RNU6-785P-201ENST00000411324 104 ntBASIC1.02□□□□□ -2.25
LDB3O75112 RNU7-185P-201ENST00000459215 60 ntBASIC1.02□□□□□ -2.25
LDB3O75112 RNU6-531P-201ENST00000516694 104 ntBASIC1.02□□□□□ -2.25
LDB3O75112 MIR4781-201ENST00000585250 76 ntBASIC1.02□□□□□ -2.25
LDB3O75112 MIR4295-201ENST00000585286 85 ntBASIC1.02□□□□□ -2.25
LDB3O75112 AC062037.1-201ENST00000605302 128 ntBASIC1.02□□□□□ -2.25
LDB3O75112 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC1.02□□□□□ -2.25
LDB3O75112 U6.90-201ENST00000614007 104 ntBASIC1.02□□□□□ -2.25
LDB3O75112 U6.70-201ENST00000620287 104 ntBASIC1.02□□□□□ -2.25
LDB3O75112 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.02□□□□□ -2.25
LDB3O75112 AC008163.1-202ENST00000636004 2889 ntBASIC1.02□□□□□ -2.25
LDB3O75112 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.01□□□□□ -2.25
LDB3O75112 HSBP1P2-201ENST00000299671 229 ntBASIC1.01□□□□□ -2.25
LDB3O75112 Y_RNA.4-201ENST00000362333 112 ntBASIC1.01□□□□□ -2.25
LDB3O75112 Y_RNA.164-201ENST00000363709 102 ntBASIC1.01□□□□□ -2.25
LDB3O75112 Y_RNA.220-201ENST00000364244 109 ntBASIC1.01□□□□□ -2.25
LDB3O75112 SNORD113.3-201ENST00000364630 78 ntBASIC1.01□□□□□ -2.25
LDB3O75112 Y_RNA.567-201ENST00000384736 106 ntBASIC1.01□□□□□ -2.25
LDB3O75112 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.01□□□□□ -2.25
LDB3O75112 SNORD93-201ENST00000408813 74 ntBASIC1.01□□□□□ -2.25
LDB3O75112 AC002429.1-201ENST00000437672 148 ntBASIC1.01□□□□□ -2.25
LDB3O75112 AC087343.1-201ENST00000477341 475 ntBASIC1.01□□□□□ -2.25
LDB3O75112 Y_RNA.676-201ENST00000516393 96 ntBASIC1.01□□□□□ -2.25
LDB3O75112 AC026421.1-201ENST00000519101 163 ntBASIC1.01□□□□□ -2.25
LDB3O75112 AC096720.1-201ENST00000604441 183 ntBASIC1.01□□□□□ -2.25
LDB3O75112 RNU6-90P-201ENST00000606352 106 ntBASIC1.01□□□□□ -2.25
LDB3O75112 AC025521.1-201ENST00000621624 286 ntBASIC1.01□□□□□ -2.25
LDB3O75112 MIR2052-201ENST00000636055 55 ntBASIC1.01□□□□□ -2.25
LDB3O75112 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.01□□□□□ -2.25
LDB3O75112 AC023934.1-201ENST00000574529 2389 ntBASIC1.01□□□□□ -2.25
LDB3O75112 SNORD58A-201ENST00000383875 65 ntBASIC1□□□□□ -2.25
LDB3O75112 MIR181B2-201ENST00000385004 89 ntBASIC1□□□□□ -2.25
LDB3O75112 SNORD111-201ENST00000408139 94 ntBASIC1□□□□□ -2.25
LDB3O75112 RNU6-887P-201ENST00000410660 100 ntBASIC1□□□□□ -2.25
LDB3O75112 MIR18B-201ENST00000454574 71 ntBASIC1□□□□□ -2.25
LDB3O75112 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC1□□□□□ -2.25
LDB3O75112 RNU6-267P-201ENST00000516714 103 ntBASIC1□□□□□ -2.25
LDB3O75112 Y_RNA.705-201ENST00000516862 110 ntBASIC1□□□□□ -2.25
LDB3O75112 MTND5P40-201ENST00000559945 246 ntBASIC1□□□□□ -2.25
LDB3O75112 MIR4771-2-201ENST00000577758 74 ntBASIC1□□□□□ -2.25
LDB3O75112 MIR4771-1-201ENST00000582617 74 ntBASIC1□□□□□ -2.25
LDB3O75112 SNORD114-21-201ENST00000606412 72 ntBASIC1□□□□□ -2.25
LDB3O75112 AC106800.4-201ENST00000614905 153 ntBASIC1□□□□□ -2.25
LDB3O75112 MIR8066-201ENST00000617280 78 ntBASIC1□□□□□ -2.25
LDB3O75112 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1□□□□□ -2.25
LDB3O75112 Y_RNA.13-201ENST00000362403 112 ntBASIC0.99□□□□□ -2.25
LDB3O75112 RNU6-403P-201ENST00000363163 104 ntBASIC0.99□□□□□ -2.25
LDB3O75112 RNU6-934P-201ENST00000365154 107 ntBASIC0.99□□□□□ -2.25
LDB3O75112 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
LDB3O75112 SNORA72.6-201ENST00000384520 129 ntBASIC0.99□□□□□ -2.25
LDB3O75112 RNU6-592P-201ENST00000411333 103 ntBASIC0.99□□□□□ -2.25
LDB3O75112 SNRPGP12-201ENST00000449481 213 ntBASIC0.99□□□□□ -2.25
LDB3O75112 RNU6-850P-201ENST00000516934 103 ntBASIC0.99□□□□□ -2.25
LDB3O75112 AL513043.2-201ENST00000573941 143 ntBASIC0.99□□□□□ -2.25
LDB3O75112 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
LDB3O75112 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.98□□□□□ -2.25
LDB3O75112 Y_RNA.17-201ENST00000362433 111 ntBASIC0.98□□□□□ -2.25
LDB3O75112 Y_RNA.73-201ENST00000362910 113 ntBASIC0.98□□□□□ -2.25
LDB3O75112 RNY4P29-201ENST00000410801 97 ntBASIC0.98□□□□□ -2.25
LDB3O75112 OR2A41P-201ENST00000473586 105 ntBASIC0.98□□□□□ -2.25
LDB3O75112 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.98□□□□□ -2.25
LDB3O75112 AC013244.2-201ENST00000603396 103 ntBASIC0.98□□□□□ -2.25
LDB3O75112 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.98□□□□□ -2.25
LDB3O75112 MIR494-201ENST00000349529 81 ntBASIC0.97□□□□□ -2.25
LDB3O75112 RNU6-1134P-201ENST00000365156 101 ntBASIC0.97□□□□□ -2.25
LDB3O75112 RNU6-972P-201ENST00000391208 107 ntBASIC0.97□□□□□ -2.25
LDB3O75112 RNU6-402P-201ENST00000410678 103 ntBASIC0.97□□□□□ -2.25
LDB3O75112 RNU6ATAC17P-201ENST00000516074 71 ntBASIC0.97□□□□□ -2.25
LDB3O75112 MIR4676-201ENST00000583078 72 ntBASIC0.97□□□□□ -2.25
LDB3O75112 MIR4439-201ENST00000583746 80 ntBASIC0.97□□□□□ -2.25
LDB3O75112 AC008608.1-201ENST00000603910 127 ntBASIC0.97□□□□□ -2.25
LDB3O75112 SNORD114-27-201ENST00000363766 70 ntBASIC0.96□□□□□ -2.26
LDB3O75112 RNU6-219P-201ENST00000364728 107 ntBASIC0.96□□□□□ -2.26
LDB3O75112 Y_RNA.558-201ENST00000384685 113 ntBASIC0.96□□□□□ -2.26
LDB3O75112 MIR1257-201ENST00000408490 117 ntBASIC0.96□□□□□ -2.26
LDB3O75112 RPS26P5-201ENST00000418544 335 ntBASIC0.96□□□□□ -2.26
LDB3O75112 RNU7-106P-201ENST00000459514 67 ntBASIC0.96□□□□□ -2.26
LDB3O75112 Y_RNA.42-201ENST00000362660 108 ntBASIC0.95□□□□□ -2.26
LDB3O75112 MIR200A-201ENST00000384875 90 ntBASIC0.95□□□□□ -2.26
LDB3O75112 MIR516A2-201ENST00000384888 90 ntBASIC0.95□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 175 ms