Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC2.54□□□□□ -2
SENP3-EIF4A1A0A087X0R7 RNU6-132P-201ENST00000383863 107 ntBASIC2.53□□□□□ -2
SENP3-EIF4A1A0A087X0R7 MIR516A2-201ENST00000384888 90 ntBASIC2.53□□□□□ -2
SENP3-EIF4A1A0A087X0R7 MIR516A1-201ENST00000385033 90 ntBASIC2.53□□□□□ -2
SENP3-EIF4A1A0A087X0R7 AL049779.4-201ENST00000604500 156 ntBASIC2.53□□□□□ -2
SENP3-EIF4A1A0A087X0R7 AC080100.1-201ENST00000624239 5356 ntBASIC2.53□□□□□ -2
SENP3-EIF4A1A0A087X0R7 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.52□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 RNU6-800P-201ENST00000384473 103 ntBASIC2.52□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 MIR563-201ENST00000385080 79 ntBASIC2.52□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 MIR653-201ENST00000385279 96 ntBASIC2.52□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 SNORA67.5-201ENST00000391036 107 ntBASIC2.52□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 AC244023.1-201ENST00000426884 112 ntBASIC2.52□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 AC242498.1-201ENST00000604134 111 ntBASIC2.52□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 U6.111-201ENST00000636093 83 ntBASIC2.52□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 Y_RNA.12-201ENST00000362393 112 ntBASIC2.51□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 RNU6-540P-201ENST00000384622 101 ntBASIC2.51□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 MIR154-201ENST00000385243 84 ntBASIC2.51□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 RNU6-360P-201ENST00000390944 104 ntBASIC2.51□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 YWHAEP2-201ENST00000580066 112 ntBASIC2.51□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 YWHAEP3-201ENST00000582767 121 ntBASIC2.51□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.51□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 RNA5SP364-201ENST00000516938 78 ntBASIC2.5□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 RNU6-1223P-201ENST00000517124 104 ntBASIC2.5□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.49□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 RNA5SP393-201ENST00000363423 117 ntBASIC2.49□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 RNU6-471P-201ENST00000383944 106 ntBASIC2.49□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 RNU6-1241P-201ENST00000384536 107 ntBASIC2.49□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 SNORD111.1-201ENST00000516421 86 ntBASIC2.49□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 PRELID3BP2-201ENST00000605362 201 ntBASIC2.49□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 MIR664A-201ENST00000626086 82 ntBASIC2.49□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.49□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.49□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 RNU6-53P-201ENST00000365367 106 ntBASIC2.48□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 RNU6-396P-201ENST00000365369 105 ntBASIC2.48□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 MIR9-3-201ENST00000385084 90 ntBASIC2.48□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 MIR4264-201ENST00000583520 66 ntBASIC2.48□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 AL627230.5-201ENST00000619807 58 ntBASIC2.48□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC2.48□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 ZNF355P-201ENST00000427301 3216 ntBASIC2.47□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 MIRLET7F1-201ENST00000362202 87 ntBASIC2.47□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 SNORA8.1-201ENST00000384250 140 ntBASIC2.47□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 MT-TF-201ENST00000387314 71 ntBASIC2.47□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 RNU6-663P-201ENST00000391105 106 ntBASIC2.47□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 AC093423.1-201ENST00000440817 142 ntBASIC2.47□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.47□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 AL161722.3-201ENST00000605789 2983 ntBASIC2.47□□□□□ -2.01
SENP3-EIF4A1A0A087X0R7 MIR30D-201ENST00000362283 70 ntBASIC2.46□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 SNORA67.1-201ENST00000364749 141 ntBASIC2.46□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 RNU6-1165P-201ENST00000410119 107 ntBASIC2.46□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 MIR5194-201ENST00000582634 120 ntBASIC2.46□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 RN7SL793P-201ENST00000583259 296 ntBASIC2.46□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 MIR6740-201ENST00000618268 113 ntBASIC2.46□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 RNU4-58P-201ENST00000363192 141 ntBASIC2.45□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 RNU6-987P-201ENST00000384759 104 ntBASIC2.45□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.45□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 RNA5SP100-201ENST00000410903 110 ntBASIC2.45□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 RNA5SP59-201ENST00000410922 110 ntBASIC2.45□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 RNA5SP82-201ENST00000516707 92 ntBASIC2.45□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.45□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.45□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 MIR4448-201ENST00000584360 86 ntBASIC2.45□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.45□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 NEAT1_2.1-201ENST00000620525 105 ntBASIC2.45□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.45□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 RNA5SP489-201ENST00000410986 109 ntBASIC2.44□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 MIR4419B-201ENST00000577260 68 ntBASIC2.44□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC2.44□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.44□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 RNU6-957P-201ENST00000363652 99 ntBASIC2.43□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 SNORA16.1-201ENST00000364597 132 ntBASIC2.43□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 RNY4P3-201ENST00000365254 95 ntBASIC2.43□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 MIR942-201ENST00000401111 86 ntBASIC2.43□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 SNORD63B-201ENST00000411005 70 ntBASIC2.43□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 RNU7-106P-201ENST00000459514 67 ntBASIC2.43□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 SNORA31.17-201ENST00000516953 127 ntBASIC2.43□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC2.42□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 RNU6-203P-201ENST00000384038 104 ntBASIC2.42□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 MIR524-201ENST00000385242 87 ntBASIC2.42□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 MT-TN-201ENST00000387400 73 ntBASIC2.42□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 MTND4LP19-201ENST00000403051 166 ntBASIC2.42□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 AC098934.3-201ENST00000430450 190 ntBASIC2.42□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 RNU7-62P-201ENST00000458856 62 ntBASIC2.42□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 RNU6-1194P-201ENST00000516208 104 ntBASIC2.42□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 MIR2115-201ENST00000516657 100 ntBASIC2.42□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 AC084768.2-201ENST00000622736 221 ntBASIC2.42□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC2.41□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 Y_RNA.42-201ENST00000362660 108 ntBASIC2.41□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 SNORD115-31-201ENST00000365318 82 ntBASIC2.41□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 MIR194-1-201ENST00000384892 85 ntBASIC2.41□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 RNU4-37P-201ENST00000410214 84 ntBASIC2.41□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 AC079804.2-201ENST00000490376 200 ntBASIC2.41□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 RNU7-156P-201ENST00000517214 74 ntBASIC2.41□□□□□ -2.02
SENP3-EIF4A1A0A087X0R7 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.4□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 180.9 ms