Protein–RNA interactions for Protein: Q9Y4C1

KDM3A, Lysine-specific demethylase 3A, humanhuman

Predictions only

Length 1,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KDM3AQ9Y4C1 RNU4-69P-201ENST00000410677 143 ntBASIC0.5□□□□□ -2.33
KDM3AQ9Y4C1 AC243829.6-201ENST00000612652 106 ntBASIC0.5□□□□□ -2.33
KDM3AQ9Y4C1 AL137067.1-201ENST00000615933 120 ntBASIC0.5□□□□□ -2.33
KDM3AQ9Y4C1 MIR5087-201ENST00000635826 76 ntBASIC0.5□□□□□ -2.33
KDM3AQ9Y4C1 MIR101-2-201ENST00000362195 79 ntBASIC0.49□□□□□ -2.33
KDM3AQ9Y4C1 Y_RNA.8-201ENST00000362353 102 ntBASIC0.49□□□□□ -2.33
KDM3AQ9Y4C1 Y_RNA.85-201ENST00000363014 111 ntBASIC0.49□□□□□ -2.33
KDM3AQ9Y4C1 RNA5SP133-201ENST00000363368 119 ntBASIC0.49□□□□□ -2.33
KDM3AQ9Y4C1 Y_RNA.366-201ENST00000365540 102 ntBASIC0.49□□□□□ -2.33
KDM3AQ9Y4C1 VTRNA1-3-201ENST00000365645 89 ntBASIC0.49□□□□□ -2.33
KDM3AQ9Y4C1 Y_RNA.536-201ENST00000384621 113 ntBASIC0.49□□□□□ -2.33
KDM3AQ9Y4C1 RNU6-535P-201ENST00000384722 107 ntBASIC0.49□□□□□ -2.33
KDM3AQ9Y4C1 Y_RNA.651-201ENST00000459380 103 ntBASIC0.49□□□□□ -2.33
KDM3AQ9Y4C1 RNU6-1194P-201ENST00000516208 104 ntBASIC0.49□□□□□ -2.33
KDM3AQ9Y4C1 SNORA25.16-201ENST00000516741 121 ntBASIC0.49□□□□□ -2.33
KDM3AQ9Y4C1 RNA5SP94-201ENST00000516917 108 ntBASIC0.49□□□□□ -2.33
KDM3AQ9Y4C1 AC098479.1-201ENST00000609225 154 ntBASIC0.49□□□□□ -2.33
KDM3AQ9Y4C1 RNU6-1229P-201ENST00000364295 107 ntBASIC0.48□□□□□ -2.33
KDM3AQ9Y4C1 Y_RNA.567-201ENST00000384736 106 ntBASIC0.48□□□□□ -2.33
KDM3AQ9Y4C1 RNU6-394P-201ENST00000410735 107 ntBASIC0.48□□□□□ -2.33
KDM3AQ9Y4C1 SNORA40.8-201ENST00000411034 126 ntBASIC0.48□□□□□ -2.33
KDM3AQ9Y4C1 SNORD67.1-201ENST00000516618 108 ntBASIC0.48□□□□□ -2.33
KDM3AQ9Y4C1 RNU7-137P-201ENST00000516788 62 ntBASIC0.48□□□□□ -2.33
KDM3AQ9Y4C1 MIR2909-201ENST00000617113 69 ntBASIC0.48□□□□□ -2.33
KDM3AQ9Y4C1 U6.109-201ENST00000636749 87 ntBASIC0.48□□□□□ -2.33
KDM3AQ9Y4C1 Y_RNA.68-201ENST00000362881 102 ntBASIC0.47□□□□□ -2.33
KDM3AQ9Y4C1 Y_RNA.178-201ENST00000363832 102 ntBASIC0.47□□□□□ -2.33
KDM3AQ9Y4C1 RNU6-915P-201ENST00000364943 103 ntBASIC0.47□□□□□ -2.33
KDM3AQ9Y4C1 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.47□□□□□ -2.33
KDM3AQ9Y4C1 FTX_2.1-201ENST00000618816 94 ntBASIC0.47□□□□□ -2.33
KDM3AQ9Y4C1 RNY1P11-201ENST00000363759 113 ntBASIC0.46□□□□□ -2.34
KDM3AQ9Y4C1 RNU6-1130P-201ENST00000365434 107 ntBASIC0.46□□□□□ -2.34
KDM3AQ9Y4C1 AC096949.1-201ENST00000412047 152 ntBASIC0.46□□□□□ -2.34
KDM3AQ9Y4C1 RNU6-531P-201ENST00000516694 104 ntBASIC0.46□□□□□ -2.34
KDM3AQ9Y4C1 RNU6-794P-201ENST00000517261 64 ntBASIC0.46□□□□□ -2.34
KDM3AQ9Y4C1 AP001328.1-201ENST00000528550 176 ntBASIC0.46□□□□□ -2.34
KDM3AQ9Y4C1 MIR3144-201ENST00000579460 79 ntBASIC0.46□□□□□ -2.34
KDM3AQ9Y4C1 MIR548X2-201ENST00000579776 100 ntBASIC0.46□□□□□ -2.34
KDM3AQ9Y4C1 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.46□□□□□ -2.34
KDM3AQ9Y4C1 RNU6-508P-201ENST00000363231 103 ntBASIC0.45□□□□□ -2.34
KDM3AQ9Y4C1 Y_RNA.150-201ENST00000363562 102 ntBASIC0.45□□□□□ -2.34
KDM3AQ9Y4C1 RNA5SP517-201ENST00000364724 117 ntBASIC0.45□□□□□ -2.34
KDM3AQ9Y4C1 MIR644A-201ENST00000385262 94 ntBASIC0.45□□□□□ -2.34
KDM3AQ9Y4C1 MIRLET7F2-201ENST00000385277 83 ntBASIC0.45□□□□□ -2.34
KDM3AQ9Y4C1 RNU6-460P-201ENST00000391158 108 ntBASIC0.45□□□□□ -2.34
KDM3AQ9Y4C1 RNY4P20-201ENST00000516678 93 ntBASIC0.45□□□□□ -2.34
KDM3AQ9Y4C1 SNORA31.14-201ENST00000516728 116 ntBASIC0.45□□□□□ -2.34
KDM3AQ9Y4C1 SNORA50A-201ENST00000384225 134 ntBASIC0.44□□□□□ -2.34
KDM3AQ9Y4C1 RNU6-804P-201ENST00000384286 107 ntBASIC0.44□□□□□ -2.34
KDM3AQ9Y4C1 RNU6-886P-201ENST00000384319 105 ntBASIC0.44□□□□□ -2.34
KDM3AQ9Y4C1 RNU6-291P-201ENST00000384720 107 ntBASIC0.44□□□□□ -2.34
KDM3AQ9Y4C1 MIR759-201ENST00000390224 91 ntBASIC0.44□□□□□ -2.34
KDM3AQ9Y4C1 MTND5P34-201ENST00000568888 325 ntBASIC0.44□□□□□ -2.34
KDM3AQ9Y4C1 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.44□□□□□ -2.34
KDM3AQ9Y4C1 AC105081.1-201ENST00000617727 106 ntBASIC0.44□□□□□ -2.34
KDM3AQ9Y4C1 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.44□□□□□ -2.34
KDM3AQ9Y4C1 RNU6-1099P-201ENST00000363533 107 ntBASIC0.43□□□□□ -2.34
KDM3AQ9Y4C1 Y_RNA.400-201ENST00000383963 111 ntBASIC0.43□□□□□ -2.34
KDM3AQ9Y4C1 MIR518A1-201ENST00000385068 85 ntBASIC0.43□□□□□ -2.34
KDM3AQ9Y4C1 RNU7-197P-201ENST00000458836 62 ntBASIC0.43□□□□□ -2.34
KDM3AQ9Y4C1 Y_RNA.32-201ENST00000362589 110 ntBASIC0.42□□□□□ -2.34
KDM3AQ9Y4C1 Y_RNA.119-201ENST00000363301 96 ntBASIC0.42□□□□□ -2.34
KDM3AQ9Y4C1 RNU6-647P-201ENST00000364243 107 ntBASIC0.42□□□□□ -2.34
KDM3AQ9Y4C1 SNORA8.2-201ENST00000384372 139 ntBASIC0.42□□□□□ -2.34
KDM3AQ9Y4C1 AC138749.4-201ENST00000563970 127 ntBASIC0.42□□□□□ -2.34
KDM3AQ9Y4C1 MIR3121-201ENST00000579680 77 ntBASIC0.42□□□□□ -2.34
KDM3AQ9Y4C1 RNY1P2-201ENST00000364820 117 ntBASIC0.41□□□□□ -2.34
KDM3AQ9Y4C1 Y_RNA.398-201ENST00000383952 99 ntBASIC0.41□□□□□ -2.34
KDM3AQ9Y4C1 SNORA68.3-201ENST00000515906 83 ntBASIC0.41□□□□□ -2.34
KDM3AQ9Y4C1 AC022523.2-201ENST00000561045 150 ntBASIC0.41□□□□□ -2.34
KDM3AQ9Y4C1 AL359881.1-201ENST00000602916 267 ntBASIC0.41□□□□□ -2.34
KDM3AQ9Y4C1 RNU7-10P-201ENST00000607194 63 ntBASIC0.41□□□□□ -2.34
KDM3AQ9Y4C1 AP001340.1-201ENST00000624405 217 ntBASIC0.41□□□□□ -2.34
KDM3AQ9Y4C1 AC090625.1-201ENST00000357130 210 ntBASIC0.4□□□□□ -2.34
KDM3AQ9Y4C1 Y_RNA.98-201ENST00000363109 102 ntBASIC0.4□□□□□ -2.34
KDM3AQ9Y4C1 SNORD18A-201ENST00000363753 72 ntBASIC0.4□□□□□ -2.34
KDM3AQ9Y4C1 Y_RNA.215-201ENST00000364204 112 ntBASIC0.4□□□□□ -2.34
KDM3AQ9Y4C1 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.4□□□□□ -2.34
KDM3AQ9Y4C1 AC108081.1-201ENST00000604358 221 ntBASIC0.4□□□□□ -2.34
KDM3AQ9Y4C1 MIRLET7D-201ENST00000362263 87 ntBASIC0.39□□□□□ -2.35
KDM3AQ9Y4C1 Y_RNA.56-201ENST00000362798 112 ntBASIC0.39□□□□□ -2.35
KDM3AQ9Y4C1 RNA5SP62-201ENST00000363457 110 ntBASIC0.39□□□□□ -2.35
KDM3AQ9Y4C1 Y_RNA.420-201ENST00000384043 110 ntBASIC0.39□□□□□ -2.35
KDM3AQ9Y4C1 Y_RNA.433-201ENST00000384089 102 ntBASIC0.39□□□□□ -2.35
KDM3AQ9Y4C1 RNU6-429P-201ENST00000384582 108 ntBASIC0.39□□□□□ -2.35
KDM3AQ9Y4C1 Y_RNA.555-201ENST00000384673 110 ntBASIC0.39□□□□□ -2.35
KDM3AQ9Y4C1 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.39□□□□□ -2.35
KDM3AQ9Y4C1 RNU7-48P-201ENST00000458875 63 ntBASIC0.39□□□□□ -2.35
KDM3AQ9Y4C1 MIR548H5-201ENST00000580314 60 ntBASIC0.39□□□□□ -2.35
KDM3AQ9Y4C1 MIR4514-201ENST00000581410 57 ntBASIC0.39□□□□□ -2.35
KDM3AQ9Y4C1 MIR4639-201ENST00000584938 69 ntBASIC0.39□□□□□ -2.35
KDM3AQ9Y4C1 SNORA25.18-201ENST00000607153 114 ntBASIC0.39□□□□□ -2.35
KDM3AQ9Y4C1 SNORD118-201ENST00000363593 134 ntBASIC0.38□□□□□ -2.35
KDM3AQ9Y4C1 RNU6-865P-201ENST00000364772 107 ntBASIC0.38□□□□□ -2.35
KDM3AQ9Y4C1 Y_RNA.448-201ENST00000384185 108 ntBASIC0.38□□□□□ -2.35
KDM3AQ9Y4C1 Y_RNA.488-201ENST00000384403 102 ntBASIC0.38□□□□□ -2.35
KDM3AQ9Y4C1 RNA5SP227-201ENST00000516184 113 ntBASIC0.38□□□□□ -2.35
KDM3AQ9Y4C1 RNA5SP268-201ENST00000516828 124 ntBASIC0.38□□□□□ -2.35
KDM3AQ9Y4C1 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.38□□□□□ -2.35
KDM3AQ9Y4C1 Y_RNA.114-201ENST00000363265 113 ntBASIC0.38□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 168.4 ms