Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 AC112693.2-201ENST00000556538 232 ntBASIC0.32□□□□□ -2.36
CPSF3Q9UKF6 AC022523.2-201ENST00000561045 150 ntBASIC0.32□□□□□ -2.36
CPSF3Q9UKF6 RNU4-11P-201ENST00000365287 132 ntBASIC0.31□□□□□ -2.36
CPSF3Q9UKF6 SNRPGP12-201ENST00000449481 213 ntBASIC0.31□□□□□ -2.36
CPSF3Q9UKF6 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.31□□□□□ -2.36
CPSF3Q9UKF6 RNU4-58P-201ENST00000363192 141 ntBASIC0.3□□□□□ -2.36
CPSF3Q9UKF6 SNORD114-10-201ENST00000363409 72 ntBASIC0.3□□□□□ -2.36
CPSF3Q9UKF6 RNA5SP245-201ENST00000364239 121 ntBASIC0.3□□□□□ -2.36
CPSF3Q9UKF6 Y_RNA.298-201ENST00000364960 107 ntBASIC0.3□□□□□ -2.36
CPSF3Q9UKF6 RNU7-197P-201ENST00000458836 62 ntBASIC0.3□□□□□ -2.36
CPSF3Q9UKF6 AC108740.1-201ENST00000498629 225 ntBASIC0.3□□□□□ -2.36
CPSF3Q9UKF6 RNA5SP268-201ENST00000516828 124 ntBASIC0.3□□□□□ -2.36
CPSF3Q9UKF6 RNA5SP47-201ENST00000517230 109 ntBASIC0.3□□□□□ -2.36
CPSF3Q9UKF6 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.3□□□□□ -2.36
CPSF3Q9UKF6 AC108081.1-201ENST00000604358 221 ntBASIC0.3□□□□□ -2.36
CPSF3Q9UKF6 AC105081.1-201ENST00000617727 106 ntBASIC0.3□□□□□ -2.36
CPSF3Q9UKF6 SUMO1P3-201ENST00000439961 304 ntBASIC0.29□□□□□ -2.36
CPSF3Q9UKF6 RNU6-135P-201ENST00000516769 101 ntBASIC0.29□□□□□ -2.36
CPSF3Q9UKF6 AC098479.1-201ENST00000609225 154 ntBASIC0.29□□□□□ -2.36
CPSF3Q9UKF6 MIR7107-201ENST00000611489 80 ntBASIC0.29□□□□□ -2.36
CPSF3Q9UKF6 MIR6828-201ENST00000636181 60 ntBASIC0.29□□□□□ -2.36
CPSF3Q9UKF6 AC010487.4-201ENST00000637027 61 ntBASIC0.29□□□□□ -2.36
CPSF3Q9UKF6 Y_RNA.119-201ENST00000363301 96 ntBASIC0.28□□□□□ -2.36
CPSF3Q9UKF6 SNORA63.5-201ENST00000363548 123 ntBASIC0.28□□□□□ -2.36
CPSF3Q9UKF6 SNORD28-201ENST00000384706 75 ntBASIC0.28□□□□□ -2.36
CPSF3Q9UKF6 MIR613-201ENST00000385248 95 ntBASIC0.28□□□□□ -2.36
CPSF3Q9UKF6 RNU4-69P-201ENST00000410677 143 ntBASIC0.28□□□□□ -2.36
CPSF3Q9UKF6 SCARNA16.5-201ENST00000517114 183 ntBASIC0.28□□□□□ -2.36
CPSF3Q9UKF6 RNU6-1229P-201ENST00000364295 107 ntBASIC0.27□□□□□ -2.37
CPSF3Q9UKF6 RNU6-1130P-201ENST00000365434 107 ntBASIC0.27□□□□□ -2.37
CPSF3Q9UKF6 RNY4P20-201ENST00000516678 93 ntBASIC0.27□□□□□ -2.37
CPSF3Q9UKF6 MIR4639-201ENST00000584938 69 ntBASIC0.27□□□□□ -2.37
CPSF3Q9UKF6 RNU6-151P-201ENST00000364158 107 ntBASIC0.26□□□□□ -2.37
CPSF3Q9UKF6 RNY1P2-201ENST00000364820 117 ntBASIC0.26□□□□□ -2.37
CPSF3Q9UKF6 Y_RNA.299-201ENST00000364973 94 ntBASIC0.26□□□□□ -2.37
CPSF3Q9UKF6 RNY1P4-201ENST00000384595 115 ntBASIC0.26□□□□□ -2.37
CPSF3Q9UKF6 RNU6-1104P-201ENST00000384723 104 ntBASIC0.26□□□□□ -2.37
CPSF3Q9UKF6 MIRLET7F2-201ENST00000385277 83 ntBASIC0.26□□□□□ -2.37
CPSF3Q9UKF6 RNU6-1321P-201ENST00000390905 107 ntBASIC0.26□□□□□ -2.37
CPSF3Q9UKF6 RNU6-460P-201ENST00000391158 108 ntBASIC0.26□□□□□ -2.37
CPSF3Q9UKF6 RNU5E-3P-201ENST00000515913 68 ntBASIC0.26□□□□□ -2.37
CPSF3Q9UKF6 AL137067.1-201ENST00000615933 120 ntBASIC0.26□□□□□ -2.37
CPSF3Q9UKF6 Y_RNA.778-201ENST00000620203 90 ntBASIC0.26□□□□□ -2.37
CPSF3Q9UKF6 MIR101-2-201ENST00000362195 79 ntBASIC0.25□□□□□ -2.37
CPSF3Q9UKF6 RNA5SP62-201ENST00000363457 110 ntBASIC0.25□□□□□ -2.37
CPSF3Q9UKF6 MIR206-201ENST00000384872 86 ntBASIC0.25□□□□□ -2.37
CPSF3Q9UKF6 AC244669.1-204ENST00000621564 178 ntBASIC0.25□□□□□ -2.37
CPSF3Q9UKF6 Y_RNA.580-201ENST00000391004 95 ntBASIC0.24□□□□□ -2.37
CPSF3Q9UKF6 RNU2-59P-201ENST00000410482 191 ntBASIC0.24□□□□□ -2.37
CPSF3Q9UKF6 RNU6-394P-201ENST00000410735 107 ntBASIC0.24□□□□□ -2.37
CPSF3Q9UKF6 AC069271.1-201ENST00000445577 156 ntBASIC0.24□□□□□ -2.37
CPSF3Q9UKF6 RNU6-863P-201ENST00000515989 104 ntBASIC0.24□□□□□ -2.37
CPSF3Q9UKF6 RNA5SP227-201ENST00000516184 113 ntBASIC0.24□□□□□ -2.37
CPSF3Q9UKF6 MIR5093-201ENST00000583199 100 ntBASIC0.24□□□□□ -2.37
CPSF3Q9UKF6 AC091304.10-201ENST00000641554 121 ntBASIC0.24□□□□□ -2.37
CPSF3Q9UKF6 Y_RNA.56-201ENST00000362798 112 ntBASIC0.23□□□□□ -2.37
CPSF3Q9UKF6 RNU6-449P-201ENST00000383914 107 ntBASIC0.23□□□□□ -2.37
CPSF3Q9UKF6 SNORD116-18-201ENST00000383961 92 ntBASIC0.23□□□□□ -2.37
CPSF3Q9UKF6 RNU6-1307P-201ENST00000391012 103 ntBASIC0.23□□□□□ -2.37
CPSF3Q9UKF6 TUG1_4.1-201ENST00000619464 181 ntBASIC0.23□□□□□ -2.37
CPSF3Q9UKF6 RNU6-915P-201ENST00000364943 103 ntBASIC0.22□□□□□ -2.37
CPSF3Q9UKF6 RNU6-815P-201ENST00000384080 113 ntBASIC0.22□□□□□ -2.37
CPSF3Q9UKF6 Y_RNA.448-201ENST00000384185 108 ntBASIC0.22□□□□□ -2.37
CPSF3Q9UKF6 RNU6-429P-201ENST00000384582 108 ntBASIC0.22□□□□□ -2.37
CPSF3Q9UKF6 SNORD77B-201ENST00000391112 67 ntBASIC0.22□□□□□ -2.37
CPSF3Q9UKF6 IGKV1-22-201ENST00000524313 326 ntBASIC0.22□□□□□ -2.37
CPSF3Q9UKF6 MIR3121-201ENST00000579680 77 ntBASIC0.22□□□□□ -2.37
CPSF3Q9UKF6 MIR6755-201ENST00000619993 66 ntBASIC0.22□□□□□ -2.37
CPSF3Q9UKF6 RNU6-1099P-201ENST00000363533 107 ntBASIC0.21□□□□□ -2.38
CPSF3Q9UKF6 AC073261.1-201ENST00000429409 121 ntBASIC0.21□□□□□ -2.38
CPSF3Q9UKF6 AC244505.6-201ENST00000452829 130 ntBASIC0.21□□□□□ -2.38
CPSF3Q9UKF6 MIR924-201ENST00000638017 53 ntBASIC0.21□□□□□ -2.38
CPSF3Q9UKF6 Y_RNA.36-201ENST00000362602 112 ntBASIC0.2□□□□□ -2.38
CPSF3Q9UKF6 RNU6-187P-201ENST00000384139 106 ntBASIC0.2□□□□□ -2.38
CPSF3Q9UKF6 RNU6-804P-201ENST00000384286 107 ntBASIC0.2□□□□□ -2.38
CPSF3Q9UKF6 PCNPP3-201ENST00000393579 471 ntBASIC0.2□□□□□ -2.38
CPSF3Q9UKF6 RNU7-48P-201ENST00000458875 63 ntBASIC0.2□□□□□ -2.38
CPSF3Q9UKF6 RNU6-182P-201ENST00000516970 105 ntBASIC0.2□□□□□ -2.38
CPSF3Q9UKF6 AC069113.3-201ENST00000521019 150 ntBASIC0.2□□□□□ -2.38
CPSF3Q9UKF6 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.2□□□□□ -2.38
CPSF3Q9UKF6 Y_RNA.49-201ENST00000362714 112 ntBASIC0.19□□□□□ -2.38
CPSF3Q9UKF6 SNORD115-24-201ENST00000363528 82 ntBASIC0.19□□□□□ -2.38
CPSF3Q9UKF6 SNORD114-26-201ENST00000363543 72 ntBASIC0.19□□□□□ -2.38
CPSF3Q9UKF6 RNU6-1126P-201ENST00000384002 107 ntBASIC0.19□□□□□ -2.38
CPSF3Q9UKF6 RNU6-616P-201ENST00000384353 107 ntBASIC0.19□□□□□ -2.38
CPSF3Q9UKF6 MIR193B-201ENST00000384907 83 ntBASIC0.19□□□□□ -2.38
CPSF3Q9UKF6 RNU7-2P-201ENST00000516096 62 ntBASIC0.19□□□□□ -2.38
CPSF3Q9UKF6 SNORA62.5-201ENST00000516634 120 ntBASIC0.19□□□□□ -2.38
CPSF3Q9UKF6 RNA5SP480-201ENST00000516840 109 ntBASIC0.19□□□□□ -2.38
CPSF3Q9UKF6 FTX_2.1-201ENST00000618816 94 ntBASIC0.19□□□□□ -2.38
CPSF3Q9UKF6 MT-TI-201ENST00000387365 69 ntBASIC0.18□□□□□ -2.38
CPSF3Q9UKF6 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.18□□□□□ -2.38
CPSF3Q9UKF6 MIR513C-201ENST00000401352 84 ntBASIC0.18□□□□□ -2.38
CPSF3Q9UKF6 Y_RNA.692-201ENST00000516627 105 ntBASIC0.18□□□□□ -2.38
CPSF3Q9UKF6 AC138869.1-201ENST00000568623 124 ntBASIC0.18□□□□□ -2.38
CPSF3Q9UKF6 MIR3144-201ENST00000579460 79 ntBASIC0.18□□□□□ -2.38
CPSF3Q9UKF6 MIR548H5-201ENST00000580314 60 ntBASIC0.18□□□□□ -2.38
CPSF3Q9UKF6 Y_RNA.8-201ENST00000362353 102 ntBASIC0.17□□□□□ -2.38
CPSF3Q9UKF6 RNU6-716P-201ENST00000365621 103 ntBASIC0.17□□□□□ -2.38
CPSF3Q9UKF6 Y_RNA.398-201ENST00000383952 99 ntBASIC0.17□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 298.6 ms