Protein–RNA interactions for Protein: Q9NY35

CLDND1, Claudin domain-containing protein 1, humanhuman

Predictions only

Length 253 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1Q9NY35 MIR5582-201ENST00000579697 68 ntBASIC1.64□□□□□ -2.15
CLDND1Q9NY35 MIR376B-201ENST00000614515 100 ntBASIC1.64□□□□□ -2.15
CLDND1Q9NY35 SEPT14P17-201ENST00000617978 177 ntBASIC1.64□□□□□ -2.15
CLDND1Q9NY35 AL353770.2-201ENST00000620024 78 ntBASIC1.64□□□□□ -2.15
CLDND1Q9NY35 MIR2052-201ENST00000636055 55 ntBASIC1.64□□□□□ -2.15
CLDND1Q9NY35 AL161722.3-201ENST00000605789 2983 ntBASIC1.63□□□□□ -2.15
CLDND1Q9NY35 RNU6-170P-201ENST00000362832 104 ntBASIC1.63□□□□□ -2.15
CLDND1Q9NY35 Y_RNA.247-201ENST00000364500 92 ntBASIC1.63□□□□□ -2.15
CLDND1Q9NY35 RNY4P30-201ENST00000410216 95 ntBASIC1.63□□□□□ -2.15
CLDND1Q9NY35 AC012531.4-201ENST00000616509 177 ntBASIC1.63□□□□□ -2.15
CLDND1Q9NY35 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
CLDND1Q9NY35 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.63□□□□□ -2.15
CLDND1Q9NY35 Y_RNA.98-201ENST00000363109 102 ntBASIC1.62□□□□□ -2.15
CLDND1Q9NY35 SNORD114-26-201ENST00000363543 72 ntBASIC1.62□□□□□ -2.15
CLDND1Q9NY35 Y_RNA.168-201ENST00000363740 102 ntBASIC1.62□□□□□ -2.15
CLDND1Q9NY35 RNA5SP325-201ENST00000363756 130 ntBASIC1.62□□□□□ -2.15
CLDND1Q9NY35 SNORD45B-201ENST00000364617 72 ntBASIC1.62□□□□□ -2.15
CLDND1Q9NY35 SNORD48-201ENST00000364953 64 ntBASIC1.62□□□□□ -2.15
CLDND1Q9NY35 MT-TF-201ENST00000387314 71 ntBASIC1.62□□□□□ -2.15
CLDND1Q9NY35 AC096949.1-201ENST00000412047 152 ntBASIC1.62□□□□□ -2.15
CLDND1Q9NY35 RNU6-795P-201ENST00000516323 103 ntBASIC1.62□□□□□ -2.15
CLDND1Q9NY35 AC096720.1-201ENST00000604441 183 ntBASIC1.62□□□□□ -2.15
CLDND1Q9NY35 AC091304.10-201ENST00000641554 121 ntBASIC1.62□□□□□ -2.15
CLDND1Q9NY35 SNORD38.1-201ENST00000363863 68 ntBASIC1.61□□□□□ -2.15
CLDND1Q9NY35 RNU6-53P-201ENST00000365367 106 ntBASIC1.61□□□□□ -2.15
CLDND1Q9NY35 Y_RNA.363-201ENST00000365529 113 ntBASIC1.61□□□□□ -2.15
CLDND1Q9NY35 U8.15-201ENST00000390947 134 ntBASIC1.61□□□□□ -2.15
CLDND1Q9NY35 SNORA75.2-201ENST00000391138 150 ntBASIC1.61□□□□□ -2.15
CLDND1Q9NY35 SNORA75.3-201ENST00000391231 150 ntBASIC1.61□□□□□ -2.15
CLDND1Q9NY35 AC004941.2-201ENST00000427009 228 ntBASIC1.61□□□□□ -2.15
CLDND1Q9NY35 Y_RNA.659-201ENST00000515994 113 ntBASIC1.61□□□□□ -2.15
CLDND1Q9NY35 AC133485.1-201ENST00000567176 124 ntBASIC1.61□□□□□ -2.15
CLDND1Q9NY35 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.6□□□□□ -2.15
CLDND1Q9NY35 Y_RNA.95-201ENST00000363079 95 ntBASIC1.6□□□□□ -2.15
CLDND1Q9NY35 Y_RNA.369-201ENST00000365568 117 ntBASIC1.6□□□□□ -2.15
CLDND1Q9NY35 MIR488-201ENST00000365739 83 ntBASIC1.6□□□□□ -2.15
CLDND1Q9NY35 RPS29P28-201ENST00000446439 141 ntBASIC1.6□□□□□ -2.15
CLDND1Q9NY35 MIR4777-201ENST00000583710 86 ntBASIC1.6□□□□□ -2.15
CLDND1Q9NY35 MIR548Z-201ENST00000584743 97 ntBASIC1.6□□□□□ -2.15
CLDND1Q9NY35 MIR6078-201ENST00000611069 100 ntBASIC1.6□□□□□ -2.15
CLDND1Q9NY35 MIR6779-201ENST00000617283 64 ntBASIC1.6□□□□□ -2.15
CLDND1Q9NY35 AP001362.1-201ENST00000625165 124 ntBASIC1.6□□□□□ -2.15
CLDND1Q9NY35 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC1.6□□□□□ -2.15
CLDND1Q9NY35 RNY1P2-201ENST00000364820 117 ntBASIC1.59□□□□□ -2.15
CLDND1Q9NY35 SNORA2B-201ENST00000384583 137 ntBASIC1.59□□□□□ -2.15
CLDND1Q9NY35 MIR18B-201ENST00000454574 71 ntBASIC1.59□□□□□ -2.15
CLDND1Q9NY35 MIR4285-201ENST00000581001 85 ntBASIC1.59□□□□□ -2.15
CLDND1Q9NY35 MIR6515-201ENST00000619843 57 ntBASIC1.59□□□□□ -2.15
CLDND1Q9NY35 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.59□□□□□ -2.16
CLDND1Q9NY35 Y_RNA.330-201ENST00000365230 109 ntBASIC1.58□□□□□ -2.16
CLDND1Q9NY35 AL354695.1-201ENST00000427935 228 ntBASIC1.58□□□□□ -2.16
CLDND1Q9NY35 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
CLDND1Q9NY35 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
CLDND1Q9NY35 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.57□□□□□ -2.16
CLDND1Q9NY35 RNU6-1131P-201ENST00000364955 107 ntBASIC1.57□□□□□ -2.16
CLDND1Q9NY35 Y_RNA.342-201ENST00000365352 113 ntBASIC1.57□□□□□ -2.16
CLDND1Q9NY35 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC1.57□□□□□ -2.16
CLDND1Q9NY35 MRPL35P3-201ENST00000421557 364 ntBASIC1.57□□□□□ -2.16
CLDND1Q9NY35 RNU7-61P-201ENST00000515897 61 ntBASIC1.57□□□□□ -2.16
CLDND1Q9NY35 AC036111.3-201ENST00000526389 112 ntBASIC1.57□□□□□ -2.16
CLDND1Q9NY35 AC138749.4-201ENST00000563970 127 ntBASIC1.57□□□□□ -2.16
CLDND1Q9NY35 MIR4439-201ENST00000583746 80 ntBASIC1.57□□□□□ -2.16
CLDND1Q9NY35 AC012676.2-201ENST00000619258 186 ntBASIC1.57□□□□□ -2.16
CLDND1Q9NY35 SNORD113.3-201ENST00000364630 78 ntBASIC1.56□□□□□ -2.16
CLDND1Q9NY35 RNU6-644P-201ENST00000391155 98 ntBASIC1.56□□□□□ -2.16
CLDND1Q9NY35 AL591704.2-201ENST00000421658 181 ntBASIC1.56□□□□□ -2.16
CLDND1Q9NY35 AC109327.2-201ENST00000448339 378 ntBASIC1.56□□□□□ -2.16
CLDND1Q9NY35 snoU13.21-201ENST00000459368 105 ntBASIC1.56□□□□□ -2.16
CLDND1Q9NY35 AC022709.1-201ENST00000615967 87 ntBASIC1.56□□□□□ -2.16
CLDND1Q9NY35 MALAT1.1-201ENST00000618249 95 ntBASIC1.56□□□□□ -2.16
CLDND1Q9NY35 RNU6-1163P-201ENST00000364516 107 ntBASIC1.55□□□□□ -2.16
CLDND1Q9NY35 RNU6-49P-201ENST00000384256 107 ntBASIC1.55□□□□□ -2.16
CLDND1Q9NY35 Y_RNA.467-201ENST00000384297 102 ntBASIC1.55□□□□□ -2.16
CLDND1Q9NY35 SNORD38.2-201ENST00000384470 69 ntBASIC1.55□□□□□ -2.16
CLDND1Q9NY35 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.55□□□□□ -2.16
CLDND1Q9NY35 RNU6-910P-201ENST00000390844 107 ntBASIC1.55□□□□□ -2.16
CLDND1Q9NY35 MIR548G-201ENST00000408442 89 ntBASIC1.55□□□□□ -2.16
CLDND1Q9NY35 RNU7-21P-201ENST00000459430 62 ntBASIC1.55□□□□□ -2.16
CLDND1Q9NY35 AC012493.3-201ENST00000604494 112 ntBASIC1.55□□□□□ -2.16
CLDND1Q9NY35 U6.109-201ENST00000636749 87 ntBASIC1.55□□□□□ -2.16
CLDND1Q9NY35 MIR96-201ENST00000362288 78 ntBASIC1.54□□□□□ -2.16
CLDND1Q9NY35 SNORA80D-201ENST00000384488 135 ntBASIC1.54□□□□□ -2.16
CLDND1Q9NY35 MIR1304-201ENST00000408243 91 ntBASIC1.54□□□□□ -2.16
CLDND1Q9NY35 MIR3122-201ENST00000577243 73 ntBASIC1.54□□□□□ -2.16
CLDND1Q9NY35 AC006254.2-201ENST00000603259 279 ntBASIC1.54□□□□□ -2.16
CLDND1Q9NY35 RNU6-90P-201ENST00000606352 106 ntBASIC1.54□□□□□ -2.16
CLDND1Q9NY35 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
CLDND1Q9NY35 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
CLDND1Q9NY35 HSBP1P2-201ENST00000299671 229 ntBASIC1.53□□□□□ -2.16
CLDND1Q9NY35 Y_RNA.36-201ENST00000362602 112 ntBASIC1.53□□□□□ -2.16
CLDND1Q9NY35 Y_RNA.96-201ENST00000363092 109 ntBASIC1.53□□□□□ -2.16
CLDND1Q9NY35 RNA5SP133-201ENST00000363368 119 ntBASIC1.53□□□□□ -2.16
CLDND1Q9NY35 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.53□□□□□ -2.16
CLDND1Q9NY35 SNORD79.1-201ENST00000516069 84 ntBASIC1.53□□□□□ -2.16
CLDND1Q9NY35 Y_RNA.705-201ENST00000516862 110 ntBASIC1.53□□□□□ -2.16
CLDND1Q9NY35 AC106800.4-201ENST00000614905 153 ntBASIC1.53□□□□□ -2.16
CLDND1Q9NY35 AC008163.1-202ENST00000636004 2889 ntBASIC1.52□□□□□ -2.17
CLDND1Q9NY35 Y_RNA.220-201ENST00000364244 109 ntBASIC1.52□□□□□ -2.17
CLDND1Q9NY35 Y_RNA.290-201ENST00000364879 114 ntBASIC1.52□□□□□ -2.17
CLDND1Q9NY35 RNU1-36P-201ENST00000365130 165 ntBASIC1.52□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 265.8 ms