Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 RNU7-90P-201ENST00000459216 62 ntBASIC0.97□□□□□ -2.25
MMP28Q9H239 OR2A41P-201ENST00000473586 105 ntBASIC0.97□□□□□ -2.25
MMP28Q9H239 RNA5SP220-201ENST00000516298 104 ntBASIC0.97□□□□□ -2.25
MMP28Q9H239 AC106800.4-201ENST00000614905 153 ntBASIC0.97□□□□□ -2.25
MMP28Q9H239 Y_RNA.360-201ENST00000365512 102 ntBASIC0.96□□□□□ -2.26
MMP28Q9H239 RNU6-147P-201ENST00000383983 107 ntBASIC0.96□□□□□ -2.26
MMP28Q9H239 SNORA25-201ENST00000384384 134 ntBASIC0.96□□□□□ -2.26
MMP28Q9H239 MT-TF-201ENST00000387314 71 ntBASIC0.96□□□□□ -2.26
MMP28Q9H239 AC002429.1-201ENST00000437672 148 ntBASIC0.96□□□□□ -2.26
MMP28Q9H239 AC023934.1-201ENST00000574529 2389 ntBASIC0.95□□□□□ -2.26
MMP28Q9H239 RNU6-934P-201ENST00000365154 107 ntBASIC0.95□□□□□ -2.26
MMP28Q9H239 MIR34C-201ENST00000384831 77 ntBASIC0.95□□□□□ -2.26
MMP28Q9H239 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.95□□□□□ -2.26
MMP28Q9H239 SNORD111-201ENST00000408139 94 ntBASIC0.95□□□□□ -2.26
MMP28Q9H239 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.95□□□□□ -2.26
MMP28Q9H239 AL031737.1-201ENST00000450125 223 ntBASIC0.95□□□□□ -2.26
MMP28Q9H239 UBL5P1-201ENST00000507979 193 ntBASIC0.95□□□□□ -2.26
MMP28Q9H239 AC141557.1-201ENST00000540982 400 ntBASIC0.95□□□□□ -2.26
MMP28Q9H239 MIR4771-2-201ENST00000577758 74 ntBASIC0.95□□□□□ -2.26
MMP28Q9H239 MIR4771-1-201ENST00000582617 74 ntBASIC0.95□□□□□ -2.26
MMP28Q9H239 AC103810.9-201ENST00000606688 112 ntBASIC0.95□□□□□ -2.26
MMP28Q9H239 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.95□□□□□ -2.26
MMP28Q9H239 MIR376B-201ENST00000614515 100 ntBASIC0.95□□□□□ -2.26
MMP28Q9H239 RMST_2.1-201ENST00000617263 136 ntBASIC0.95□□□□□ -2.26
MMP28Q9H239 RNU6-865P-201ENST00000364772 107 ntBASIC0.94□□□□□ -2.26
MMP28Q9H239 RNU6-756P-201ENST00000383997 107 ntBASIC0.94□□□□□ -2.26
MMP28Q9H239 SNORA51.5-201ENST00000384126 131 ntBASIC0.94□□□□□ -2.26
MMP28Q9H239 MIR577-201ENST00000385196 96 ntBASIC0.94□□□□□ -2.26
MMP28Q9H239 MIR1302-5-201ENST00000408164 150 ntBASIC0.94□□□□□ -2.26
MMP28Q9H239 MIR18B-201ENST00000454574 71 ntBASIC0.94□□□□□ -2.26
MMP28Q9H239 RNU7-48P-201ENST00000458875 63 ntBASIC0.94□□□□□ -2.26
MMP28Q9H239 RNA5SP404-201ENST00000517118 132 ntBASIC0.94□□□□□ -2.26
MMP28Q9H239 AC133485.1-201ENST00000567176 124 ntBASIC0.94□□□□□ -2.26
MMP28Q9H239 MIR3613-201ENST00000579844 87 ntBASIC0.94□□□□□ -2.26
MMP28Q9H239 AC020891.4-201ENST00000605745 93 ntBASIC0.94□□□□□ -2.26
MMP28Q9H239 AC027335.2-201ENST00000624030 375 ntBASIC0.94□□□□□ -2.26
MMP28Q9H239 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
MMP28Q9H239 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
MMP28Q9H239 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC0.93□□□□□ -2.26
MMP28Q9H239 RNU6-1313P-201ENST00000362622 102 ntBASIC0.93□□□□□ -2.26
MMP28Q9H239 Y_RNA.247-201ENST00000364500 92 ntBASIC0.93□□□□□ -2.26
MMP28Q9H239 RNU1-36P-201ENST00000365130 165 ntBASIC0.93□□□□□ -2.26
MMP28Q9H239 Y_RNA.328-201ENST00000365208 113 ntBASIC0.93□□□□□ -2.26
MMP28Q9H239 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.93□□□□□ -2.26
MMP28Q9H239 SNORD12-201ENST00000391002 90 ntBASIC0.93□□□□□ -2.26
MMP28Q9H239 SNORD93-201ENST00000408813 74 ntBASIC0.93□□□□□ -2.26
MMP28Q9H239 RNU6-994P-201ENST00000410507 111 ntBASIC0.93□□□□□ -2.26
MMP28Q9H239 MTATP6P29-201ENST00000415057 132 ntBASIC0.93□□□□□ -2.26
MMP28Q9H239 RNU7-185P-201ENST00000459215 60 ntBASIC0.93□□□□□ -2.26
MMP28Q9H239 AC138749.4-201ENST00000563970 127 ntBASIC0.93□□□□□ -2.26
MMP28Q9H239 U6.109-201ENST00000636749 87 ntBASIC0.93□□□□□ -2.26
MMP28Q9H239 AL512310.12-203ENST00000640543 90 ntBASIC0.93□□□□□ -2.26
MMP28Q9H239 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
MMP28Q9H239 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.92□□□□□ -2.26
MMP28Q9H239 RNA5SP133-201ENST00000363368 119 ntBASIC0.92□□□□□ -2.26
MMP28Q9H239 RNU6-1099P-201ENST00000363533 107 ntBASIC0.92□□□□□ -2.26
MMP28Q9H239 RNU1-93P-201ENST00000364704 169 ntBASIC0.92□□□□□ -2.26
MMP28Q9H239 RNU6-1187P-201ENST00000364771 110 ntBASIC0.92□□□□□ -2.26
MMP28Q9H239 RNU6-1201P-201ENST00000384227 107 ntBASIC0.92□□□□□ -2.26
MMP28Q9H239 MIR520E-201ENST00000384867 87 ntBASIC0.92□□□□□ -2.26
MMP28Q9H239 MIR590-201ENST00000385008 97 ntBASIC0.92□□□□□ -2.26
MMP28Q9H239 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.92□□□□□ -2.26
MMP28Q9H239 Y_RNA.588-201ENST00000391254 102 ntBASIC0.92□□□□□ -2.26
MMP28Q9H239 RNU6-447P-201ENST00000410293 104 ntBASIC0.92□□□□□ -2.26
MMP28Q9H239 RNU6-1118P-201ENST00000410382 104 ntBASIC0.92□□□□□ -2.26
MMP28Q9H239 RNU6-1076P-201ENST00000410397 104 ntBASIC0.92□□□□□ -2.26
MMP28Q9H239 RNU6-355P-201ENST00000410427 104 ntBASIC0.92□□□□□ -2.26
MMP28Q9H239 RNU6-791P-201ENST00000410467 104 ntBASIC0.92□□□□□ -2.26
MMP28Q9H239 RNU6-705P-201ENST00000410601 104 ntBASIC0.92□□□□□ -2.26
MMP28Q9H239 RNU6-1100P-201ENST00000410691 104 ntBASIC0.92□□□□□ -2.26
MMP28Q9H239 RNU6-860P-201ENST00000410860 104 ntBASIC0.92□□□□□ -2.26
MMP28Q9H239 RNU6-1217P-201ENST00000411276 104 ntBASIC0.92□□□□□ -2.26
MMP28Q9H239 RNU6-785P-201ENST00000411324 104 ntBASIC0.92□□□□□ -2.26
MMP28Q9H239 MIR4694-201ENST00000578534 80 ntBASIC0.92□□□□□ -2.26
MMP28Q9H239 U6.90-201ENST00000614007 104 ntBASIC0.92□□□□□ -2.26
MMP28Q9H239 U6.70-201ENST00000620287 104 ntBASIC0.92□□□□□ -2.26
MMP28Q9H239 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.92□□□□□ -2.26
MMP28Q9H239 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC0.92□□□□□ -2.26
MMP28Q9H239 RNU6-766P-201ENST00000362478 107 ntBASIC0.91□□□□□ -2.26
MMP28Q9H239 RNU6-369P-201ENST00000362515 102 ntBASIC0.91□□□□□ -2.26
MMP28Q9H239 RNY3P2-201ENST00000362918 102 ntBASIC0.91□□□□□ -2.26
MMP28Q9H239 RNU6-403P-201ENST00000363163 104 ntBASIC0.91□□□□□ -2.26
MMP28Q9H239 RNU6-832P-201ENST00000363319 107 ntBASIC0.91□□□□□ -2.26
MMP28Q9H239 Y_RNA.466-201ENST00000384294 113 ntBASIC0.91□□□□□ -2.26
MMP28Q9H239 MIR1257-201ENST00000408490 117 ntBASIC0.91□□□□□ -2.26
MMP28Q9H239 RPS26P5-201ENST00000418544 335 ntBASIC0.91□□□□□ -2.26
MMP28Q9H239 RPS29P1-201ENST00000465274 159 ntBASIC0.91□□□□□ -2.26
MMP28Q9H239 AC087343.1-201ENST00000477341 475 ntBASIC0.91□□□□□ -2.26
MMP28Q9H239 RNU6-109P-201ENST00000516364 107 ntBASIC0.91□□□□□ -2.26
MMP28Q9H239 RNU6-184P-201ENST00000516514 107 ntBASIC0.91□□□□□ -2.26
MMP28Q9H239 RNU6-1018P-201ENST00000516577 106 ntBASIC0.91□□□□□ -2.26
MMP28Q9H239 RNU6-1006P-201ENST00000516998 103 ntBASIC0.91□□□□□ -2.26
MMP28Q9H239 MIR4491-201ENST00000581087 68 ntBASIC0.91□□□□□ -2.26
MMP28Q9H239 MIR4295-201ENST00000585286 85 ntBASIC0.91□□□□□ -2.26
MMP28Q9H239 AL442128.1-201ENST00000615151 90 ntBASIC0.91□□□□□ -2.26
MMP28Q9H239 AP001362.1-201ENST00000625165 124 ntBASIC0.91□□□□□ -2.26
MMP28Q9H239 Y_RNA.98-201ENST00000363109 102 ntBASIC0.9□□□□□ -2.27
MMP28Q9H239 RNU1-124P-201ENST00000363861 145 ntBASIC0.9□□□□□ -2.27
MMP28Q9H239 RNY1P2-201ENST00000364820 117 ntBASIC0.9□□□□□ -2.27
MMP28Q9H239 SNORA72.6-201ENST00000384520 129 ntBASIC0.9□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 312.2 ms