Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 RNA5SP133-201ENST00000363368 119 ntBASIC0.46□□□□□ -2.34
CCDC28BQ9BUN5 SNORD18A-201ENST00000363753 72 ntBASIC0.46□□□□□ -2.34
CCDC28BQ9BUN5 Y_RNA.294-201ENST00000364916 102 ntBASIC0.46□□□□□ -2.34
CCDC28BQ9BUN5 SNORD50.2-201ENST00000365465 70 ntBASIC0.46□□□□□ -2.34
CCDC28BQ9BUN5 MIR539-201ENST00000365690 78 ntBASIC0.46□□□□□ -2.34
CCDC28BQ9BUN5 RNU6-1062P-201ENST00000383908 107 ntBASIC0.46□□□□□ -2.34
CCDC28BQ9BUN5 snoU13.18-201ENST00000459483 104 ntBASIC0.46□□□□□ -2.34
CCDC28BQ9BUN5 AC138749.4-201ENST00000563970 127 ntBASIC0.46□□□□□ -2.34
CCDC28BQ9BUN5 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.46□□□□□ -2.34
CCDC28BQ9BUN5 SNORD115-19-201ENST00000363098 82 ntBASIC0.45□□□□□ -2.34
CCDC28BQ9BUN5 SNORD115-18-201ENST00000363293 82 ntBASIC0.45□□□□□ -2.34
CCDC28BQ9BUN5 SNORD115-17-201ENST00000364612 82 ntBASIC0.45□□□□□ -2.34
CCDC28BQ9BUN5 Y_RNA.508-201ENST00000384502 114 ntBASIC0.45□□□□□ -2.34
CCDC28BQ9BUN5 Y_RNA.536-201ENST00000384621 113 ntBASIC0.45□□□□□ -2.34
CCDC28BQ9BUN5 MIR206-201ENST00000384872 86 ntBASIC0.45□□□□□ -2.34
CCDC28BQ9BUN5 RNU6-257P-201ENST00000410238 98 ntBASIC0.45□□□□□ -2.34
CCDC28BQ9BUN5 RNU6-346P-201ENST00000516288 111 ntBASIC0.45□□□□□ -2.34
CCDC28BQ9BUN5 Y_RNA.697-201ENST00000516776 113 ntBASIC0.45□□□□□ -2.34
CCDC28BQ9BUN5 DEFB131E-201ENST00000532329 154 ntBASIC0.45□□□□□ -2.34
CCDC28BQ9BUN5 uc_338.16-201ENST00000621804 95 ntBASIC0.45□□□□□ -2.34
CCDC28BQ9BUN5 U6.109-201ENST00000636749 87 ntBASIC0.45□□□□□ -2.34
CCDC28BQ9BUN5 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.44□□□□□ -2.34
CCDC28BQ9BUN5 Y_RNA.98-201ENST00000363109 102 ntBASIC0.44□□□□□ -2.34
CCDC28BQ9BUN5 Y_RNA.118-201ENST00000363300 101 ntBASIC0.44□□□□□ -2.34
CCDC28BQ9BUN5 RNU6-429P-201ENST00000384582 108 ntBASIC0.44□□□□□ -2.34
CCDC28BQ9BUN5 MIRLET7F2-201ENST00000385277 83 ntBASIC0.44□□□□□ -2.34
CCDC28BQ9BUN5 MT-TR-201ENST00000387439 65 ntBASIC0.44□□□□□ -2.34
CCDC28BQ9BUN5 MIR1263-201ENST00000408324 86 ntBASIC0.44□□□□□ -2.34
CCDC28BQ9BUN5 RNU7-48P-201ENST00000458875 63 ntBASIC0.44□□□□□ -2.34
CCDC28BQ9BUN5 RNA5SP272-201ENST00000516095 111 ntBASIC0.44□□□□□ -2.34
CCDC28BQ9BUN5 RNU7-2P-201ENST00000516096 62 ntBASIC0.44□□□□□ -2.34
CCDC28BQ9BUN5 RNU6-469P-201ENST00000516253 101 ntBASIC0.44□□□□□ -2.34
CCDC28BQ9BUN5 RN7SKP12-201ENST00000516275 143 ntBASIC0.44□□□□□ -2.34
CCDC28BQ9BUN5 RNU6-531P-201ENST00000516694 104 ntBASIC0.44□□□□□ -2.34
CCDC28BQ9BUN5 Y_RNA.703-201ENST00000516846 111 ntBASIC0.44□□□□□ -2.34
CCDC28BQ9BUN5 MIR5000-201ENST00000577717 103 ntBASIC0.44□□□□□ -2.34
CCDC28BQ9BUN5 MIR3678-201ENST00000578455 94 ntBASIC0.44□□□□□ -2.34
CCDC28BQ9BUN5 Y_RNA.119-201ENST00000363301 96 ntBASIC0.43□□□□□ -2.34
CCDC28BQ9BUN5 RNU6-945P-201ENST00000383947 107 ntBASIC0.43□□□□□ -2.34
CCDC28BQ9BUN5 RNU6-746P-201ENST00000384112 109 ntBASIC0.43□□□□□ -2.34
CCDC28BQ9BUN5 Y_RNA.528-201ENST00000384575 108 ntBASIC0.43□□□□□ -2.34
CCDC28BQ9BUN5 RNU6-291P-201ENST00000384720 107 ntBASIC0.43□□□□□ -2.34
CCDC28BQ9BUN5 RNU6-535P-201ENST00000384722 107 ntBASIC0.43□□□□□ -2.34
CCDC28BQ9BUN5 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.43□□□□□ -2.34
CCDC28BQ9BUN5 RNU6-1321P-201ENST00000390905 107 ntBASIC0.43□□□□□ -2.34
CCDC28BQ9BUN5 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.43□□□□□ -2.34
CCDC28BQ9BUN5 RNU7-6P-201ENST00000516845 62 ntBASIC0.43□□□□□ -2.34
CCDC28BQ9BUN5 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.43□□□□□ -2.34
CCDC28BQ9BUN5 AC105081.1-201ENST00000617727 106 ntBASIC0.43□□□□□ -2.34
CCDC28BQ9BUN5 AC087741.2-201ENST00000619415 172 ntBASIC0.43□□□□□ -2.34
CCDC28BQ9BUN5 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.43□□□□□ -2.34
CCDC28BQ9BUN5 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.43□□□□□ -2.34
CCDC28BQ9BUN5 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC0.43□□□□□ -2.34
CCDC28BQ9BUN5 MIR101-2-201ENST00000362195 79 ntBASIC0.42□□□□□ -2.34
CCDC28BQ9BUN5 Y_RNA.32-201ENST00000362589 110 ntBASIC0.42□□□□□ -2.34
CCDC28BQ9BUN5 Y_RNA.56-201ENST00000362798 112 ntBASIC0.42□□□□□ -2.34
CCDC28BQ9BUN5 RNA5SP499-201ENST00000363982 119 ntBASIC0.42□□□□□ -2.34
CCDC28BQ9BUN5 SNORD115-35-201ENST00000365122 82 ntBASIC0.42□□□□□ -2.34
CCDC28BQ9BUN5 SNORD58C-201ENST00000365223 64 ntBASIC0.42□□□□□ -2.34
CCDC28BQ9BUN5 Y_RNA.355-201ENST00000365462 98 ntBASIC0.42□□□□□ -2.34
CCDC28BQ9BUN5 RNY1P8-201ENST00000383970 114 ntBASIC0.42□□□□□ -2.34
CCDC28BQ9BUN5 Y_RNA.448-201ENST00000384185 108 ntBASIC0.42□□□□□ -2.34
CCDC28BQ9BUN5 RNU6-616P-201ENST00000384353 107 ntBASIC0.42□□□□□ -2.34
CCDC28BQ9BUN5 RNU6-781P-201ENST00000516377 101 ntBASIC0.42□□□□□ -2.34
CCDC28BQ9BUN5 RNA5SP94-201ENST00000516917 108 ntBASIC0.42□□□□□ -2.34
CCDC28BQ9BUN5 MTND5P34-201ENST00000568888 325 ntBASIC0.42□□□□□ -2.34
CCDC28BQ9BUN5 AP001362.1-201ENST00000625165 124 ntBASIC0.42□□□□□ -2.34
CCDC28BQ9BUN5 MIR613-201ENST00000385248 95 ntBASIC0.41□□□□□ -2.34
CCDC28BQ9BUN5 MT-TI-201ENST00000387365 69 ntBASIC0.41□□□□□ -2.34
CCDC28BQ9BUN5 Y_RNA.586-201ENST00000391146 98 ntBASIC0.41□□□□□ -2.34
CCDC28BQ9BUN5 SNORA31.14-201ENST00000516728 116 ntBASIC0.41□□□□□ -2.34
CCDC28BQ9BUN5 RNU7-10P-201ENST00000607194 63 ntBASIC0.41□□□□□ -2.34
CCDC28BQ9BUN5 AC092634.7-201ENST00000621022 103 ntBASIC0.41□□□□□ -2.34
CCDC28BQ9BUN5 RNU6-235P-201ENST00000362644 107 ntBASIC0.4□□□□□ -2.35
CCDC28BQ9BUN5 RNU6-865P-201ENST00000364772 107 ntBASIC0.4□□□□□ -2.35
CCDC28BQ9BUN5 Y_RNA.328-201ENST00000365208 113 ntBASIC0.4□□□□□ -2.35
CCDC28BQ9BUN5 Y_RNA.346-201ENST00000365385 112 ntBASIC0.4□□□□□ -2.35
CCDC28BQ9BUN5 RNU6-679P-201ENST00000391003 106 ntBASIC0.4□□□□□ -2.35
CCDC28BQ9BUN5 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.4□□□□□ -2.35
CCDC28BQ9BUN5 AC114737.2-201ENST00000421583 173 ntBASIC0.4□□□□□ -2.35
CCDC28BQ9BUN5 MIR548H5-201ENST00000580314 60 ntBASIC0.4□□□□□ -2.35
CCDC28BQ9BUN5 MIR4714-201ENST00000580728 77 ntBASIC0.4□□□□□ -2.35
CCDC28BQ9BUN5 AC025166.1-201ENST00000612411 163 ntBASIC0.4□□□□□ -2.35
CCDC28BQ9BUN5 MIR6515-201ENST00000619843 57 ntBASIC0.4□□□□□ -2.35
CCDC28BQ9BUN5 Y_RNA.127-201ENST00000363386 109 ntBASIC0.39□□□□□ -2.35
CCDC28BQ9BUN5 RNY4P6-201ENST00000363667 96 ntBASIC0.39□□□□□ -2.35
CCDC28BQ9BUN5 MIR548D2-201ENST00000384955 97 ntBASIC0.39□□□□□ -2.35
CCDC28BQ9BUN5 MIR644A-201ENST00000385262 94 ntBASIC0.39□□□□□ -2.35
CCDC28BQ9BUN5 SNORA40.8-201ENST00000411034 126 ntBASIC0.39□□□□□ -2.35
CCDC28BQ9BUN5 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.39□□□□□ -2.35
CCDC28BQ9BUN5 AC092628.1-201ENST00000436250 252 ntBASIC0.39□□□□□ -2.35
CCDC28BQ9BUN5 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC0.39□□□□□ -2.35
CCDC28BQ9BUN5 RNU6-1211P-201ENST00000459179 105 ntBASIC0.39□□□□□ -2.35
CCDC28BQ9BUN5 RNU6-1061P-201ENST00000516530 99 ntBASIC0.39□□□□□ -2.35
CCDC28BQ9BUN5 MIR3133-201ENST00000583157 78 ntBASIC0.39□□□□□ -2.35
CCDC28BQ9BUN5 MIR4639-201ENST00000584938 69 ntBASIC0.39□□□□□ -2.35
CCDC28BQ9BUN5 RNA5SP347-201ENST00000362445 119 ntBASIC0.38□□□□□ -2.35
CCDC28BQ9BUN5 RNA5SP517-201ENST00000364724 117 ntBASIC0.38□□□□□ -2.35
CCDC28BQ9BUN5 RNU6-80P-201ENST00000384195 107 ntBASIC0.38□□□□□ -2.35
CCDC28BQ9BUN5 Y_RNA.567-201ENST00000384736 106 ntBASIC0.38□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 170.4 ms