Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RNU6-1109P-201ENST00000391187 107 ntBASIC-0.48□□□□□ -2.49
HDDC3Q8N4P3 AC105081.1-201ENST00000617727 106 ntBASIC-0.48□□□□□ -2.49
HDDC3Q8N4P3 RNU6-161P-201ENST00000363051 106 ntBASIC-0.49□□□□□ -2.49
HDDC3Q8N4P3 Y_RNA.120-201ENST00000363304 110 ntBASIC-0.49□□□□□ -2.49
HDDC3Q8N4P3 SNORA18.1-201ENST00000363418 128 ntBASIC-0.49□□□□□ -2.49
HDDC3Q8N4P3 RNY1P2-201ENST00000364820 117 ntBASIC-0.49□□□□□ -2.49
HDDC3Q8N4P3 RNU6-643P-201ENST00000384018 107 ntBASIC-0.49□□□□□ -2.49
HDDC3Q8N4P3 RNU6-639P-201ENST00000384074 107 ntBASIC-0.49□□□□□ -2.49
HDDC3Q8N4P3 RNU6-429P-201ENST00000384582 108 ntBASIC-0.49□□□□□ -2.49
HDDC3Q8N4P3 MIR1302-6-201ENST00000408466 90 ntBASIC-0.49□□□□□ -2.49
HDDC3Q8N4P3 MIR548AE2-201ENST00000583456 67 ntBASIC-0.49□□□□□ -2.49
HDDC3Q8N4P3 MIR4677-201ENST00000584153 80 ntBASIC-0.49□□□□□ -2.49
HDDC3Q8N4P3 AC011921.3-201ENST00000605540 361 ntBASIC-0.49□□□□□ -2.49
HDDC3Q8N4P3 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC-0.49□□□□□ -2.49
HDDC3Q8N4P3 Y_RNA.54-201ENST00000362766 105 ntBASIC-0.5□□□□□ -2.49
HDDC3Q8N4P3 RNA5SP403-201ENST00000363598 108 ntBASIC-0.5□□□□□ -2.49
HDDC3Q8N4P3 RNU6-690P-201ENST00000365242 106 ntBASIC-0.5□□□□□ -2.49
HDDC3Q8N4P3 Y_RNA.535-201ENST00000384612 99 ntBASIC-0.5□□□□□ -2.49
HDDC3Q8N4P3 AC006210.1-201ENST00000424882 111 ntBASIC-0.5□□□□□ -2.49
HDDC3Q8N4P3 MTATP6P23-201ENST00000440153 476 ntBASIC-0.5□□□□□ -2.49
HDDC3Q8N4P3 AC020661.2-201ENST00000560114 134 ntBASIC-0.5□□□□□ -2.49
HDDC3Q8N4P3 RNU2-4P-201ENST00000606190 192 ntBASIC-0.5□□□□□ -2.49
HDDC3Q8N4P3 MIR6514-201ENST00000622549 70 ntBASIC-0.5□□□□□ -2.49
HDDC3Q8N4P3 Y_RNA.221-201ENST00000364248 96 ntBASIC-0.51□□□□□ -2.49
HDDC3Q8N4P3 MIR635-201ENST00000384830 98 ntBASIC-0.51□□□□□ -2.49
HDDC3Q8N4P3 RNU6-320P-201ENST00000516511 106 ntBASIC-0.51□□□□□ -2.49
HDDC3Q8N4P3 AL359881.1-201ENST00000602916 267 ntBASIC-0.51□□□□□ -2.49
HDDC3Q8N4P3 Y_RNA.461-201ENST00000384263 103 ntBASIC-0.52□□□□□ -2.49
HDDC3Q8N4P3 Y_RNA.512-201ENST00000384518 102 ntBASIC-0.52□□□□□ -2.49
HDDC3Q8N4P3 SNORD41.1-201ENST00000391000 69 ntBASIC-0.52□□□□□ -2.49
HDDC3Q8N4P3 RNU6-180P-201ENST00000516697 61 ntBASIC-0.52□□□□□ -2.49
HDDC3Q8N4P3 AL356055.1-201ENST00000602528 446 ntBASIC-0.52□□□□□ -2.49
HDDC3Q8N4P3 uc_338.28-201ENST00000612082 187 ntBASIC-0.52□□□□□ -2.49
HDDC3Q8N4P3 RNA5SP275-201ENST00000363936 118 ntBASIC-0.53□□□□□ -2.49
HDDC3Q8N4P3 Y_RNA.292-201ENST00000364904 97 ntBASIC-0.53□□□□□ -2.49
HDDC3Q8N4P3 Y_RNA.308-201ENST00000365043 101 ntBASIC-0.53□□□□□ -2.49
HDDC3Q8N4P3 SNORA33.2-201ENST00000365413 134 ntBASIC-0.53□□□□□ -2.49
HDDC3Q8N4P3 Y_RNA.352-201ENST00000365439 102 ntBASIC-0.53□□□□□ -2.49
HDDC3Q8N4P3 Y_RNA.531-201ENST00000384589 121 ntBASIC-0.53□□□□□ -2.49
HDDC3Q8N4P3 SNORD110-201ENST00000408189 75 ntBASIC-0.53□□□□□ -2.49
HDDC3Q8N4P3 RNA5SP266-201ENST00000410273 108 ntBASIC-0.53□□□□□ -2.49
HDDC3Q8N4P3 AC074198.2-201ENST00000508153 258 ntBASIC-0.53□□□□□ -2.49
HDDC3Q8N4P3 RNU6-635P-201ENST00000516651 102 ntBASIC-0.53□□□□□ -2.49
HDDC3Q8N4P3 MIR3925-201ENST00000584674 77 ntBASIC-0.53□□□□□ -2.49
HDDC3Q8N4P3 Y_RNA.483-201ENST00000384380 101 ntBASIC-0.54□□□□□ -2.5
HDDC3Q8N4P3 Y_RNA.521-201ENST00000384560 114 ntBASIC-0.54□□□□□ -2.5
HDDC3Q8N4P3 MIR599-201ENST00000385069 95 ntBASIC-0.54□□□□□ -2.5
HDDC3Q8N4P3 AC084368.1-201ENST00000620935 65 ntBASIC-0.54□□□□□ -2.5
HDDC3Q8N4P3 Y_RNA.52-201ENST00000362760 96 ntBASIC-0.55□□□□□ -2.5
HDDC3Q8N4P3 RNU6-238P-201ENST00000363313 106 ntBASIC-0.55□□□□□ -2.5
HDDC3Q8N4P3 RNU6-509P-201ENST00000363519 107 ntBASIC-0.55□□□□□ -2.5
HDDC3Q8N4P3 RNU6-493P-201ENST00000391321 108 ntBASIC-0.55□□□□□ -2.5
HDDC3Q8N4P3 AC096531.1-201ENST00000419107 107 ntBASIC-0.55□□□□□ -2.5
HDDC3Q8N4P3 CR383656.4-201ENST00000546909 122 ntBASIC-0.55□□□□□ -2.5
HDDC3Q8N4P3 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC-0.55□□□□□ -2.5
HDDC3Q8N4P3 Y_RNA.121-201ENST00000363309 113 ntBASIC-0.56□□□□□ -2.5
HDDC3Q8N4P3 Y_RNA.182-201ENST00000363880 111 ntBASIC-0.56□□□□□ -2.5
HDDC3Q8N4P3 Y_RNA.277-201ENST00000364754 102 ntBASIC-0.56□□□□□ -2.5
HDDC3Q8N4P3 RNU6-449P-201ENST00000383914 107 ntBASIC-0.56□□□□□ -2.5
HDDC3Q8N4P3 AC097635.1-201ENST00000450678 155 ntBASIC-0.56□□□□□ -2.5
HDDC3Q8N4P3 RNY3P16-201ENST00000516338 101 ntBASIC-0.56□□□□□ -2.5
HDDC3Q8N4P3 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC-0.56□□□□□ -2.5
HDDC3Q8N4P3 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC-0.56□□□□□ -2.5
HDDC3Q8N4P3 NAMPTP3-201ENST00000569273 224 ntBASIC-0.56□□□□□ -2.5
HDDC3Q8N4P3 MIR4500-201ENST00000579472 76 ntBASIC-0.56□□□□□ -2.5
HDDC3Q8N4P3 MIR548AX-201ENST00000580117 73 ntBASIC-0.56□□□□□ -2.5
HDDC3Q8N4P3 AL670379.3-201ENST00000605040 251 ntBASIC-0.56□□□□□ -2.5
HDDC3Q8N4P3 MIR8062-201ENST00000621515 85 ntBASIC-0.56□□□□□ -2.5
HDDC3Q8N4P3 Y_RNA.61-201ENST00000362835 102 ntBASIC-0.57□□□□□ -2.5
HDDC3Q8N4P3 MT-TW-201ENST00000387382 68 ntBASIC-0.57□□□□□ -2.5
HDDC3Q8N4P3 Y_RNA.76-201ENST00000362931 109 ntBASIC-0.58□□□□□ -2.5
HDDC3Q8N4P3 Y_RNA.125-201ENST00000363371 111 ntBASIC-0.58□□□□□ -2.5
HDDC3Q8N4P3 RNU6-1336P-201ENST00000383886 109 ntBASIC-0.58□□□□□ -2.5
HDDC3Q8N4P3 MIR106A-201ENST00000384870 81 ntBASIC-0.58□□□□□ -2.5
HDDC3Q8N4P3 TRAJ51-201ENST00000504127 63 ntBASIC-0.58□□□□□ -2.5
HDDC3Q8N4P3 MRPS18CP4-201ENST00000535821 231 ntBASIC-0.58□□□□□ -2.5
HDDC3Q8N4P3 MIR4643-201ENST00000577473 78 ntBASIC-0.58□□□□□ -2.5
HDDC3Q8N4P3 RN7SL660P-201ENST00000614852 299 ntBASIC-0.58□□□□□ -2.5
HDDC3Q8N4P3 MIR148A-201ENST00000362215 68 ntBASIC-0.59□□□□□ -2.5
HDDC3Q8N4P3 SNORA32.3-201ENST00000384772 121 ntBASIC-0.59□□□□□ -2.5
HDDC3Q8N4P3 RNU4-63P-201ENST00000411313 118 ntBASIC-0.59□□□□□ -2.5
HDDC3Q8N4P3 SNORD57-201ENST00000448188 72 ntBASIC-0.59□□□□□ -2.5
HDDC3Q8N4P3 MTND1P19-201ENST00000511780 315 ntBASIC-0.59□□□□□ -2.5
HDDC3Q8N4P3 IGHVII-40-1-201ENST00000517316 58 ntBASIC-0.59□□□□□ -2.5
HDDC3Q8N4P3 AC011603.4-201ENST00000611325 277 ntBASIC-0.59□□□□□ -2.5
HDDC3Q8N4P3 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-0.59□□□□□ -2.5
HDDC3Q8N4P3 RNU6-1321P-201ENST00000390905 107 ntBASIC-0.6□□□□□ -2.51
HDDC3Q8N4P3 RNA5SP484-201ENST00000458857 111 ntBASIC-0.6□□□□□ -2.51
HDDC3Q8N4P3 RNU7-48P-201ENST00000458875 63 ntBASIC-0.6□□□□□ -2.51
HDDC3Q8N4P3 RNU2-35P-201ENST00000516446 142 ntBASIC-0.6□□□□□ -2.51
HDDC3Q8N4P3 AC138907.4-201ENST00000570107 226 ntBASIC-0.6□□□□□ -2.51
HDDC3Q8N4P3 AC021443.1-201ENST00000604478 211 ntBASIC-0.6□□□□□ -2.51
HDDC3Q8N4P3 MIR3666-201ENST00000607845 111 ntBASIC-0.6□□□□□ -2.51
HDDC3Q8N4P3 Y_RNA.299-201ENST00000364973 94 ntBASIC-0.61□□□□□ -2.51
HDDC3Q8N4P3 Y_RNA.357-201ENST00000365487 109 ntBASIC-0.61□□□□□ -2.51
HDDC3Q8N4P3 Y_RNA.448-201ENST00000384185 108 ntBASIC-0.61□□□□□ -2.51
HDDC3Q8N4P3 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC-0.61□□□□□ -2.51
HDDC3Q8N4P3 RNA5SP236-201ENST00000516169 116 ntBASIC-0.61□□□□□ -2.51
HDDC3Q8N4P3 RNU6-275P-201ENST00000364910 107 ntBASIC-0.62□□□□□ -2.51
HDDC3Q8N4P3 Y_RNA.457-201ENST00000384237 111 ntBASIC-0.62□□□□□ -2.51
Retrieved 100 of 98,524 protein–RNA pairs in 184.3 ms