Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RNU6-1336P-201ENST00000383886 109 ntBASIC-0.31□□□□□ -2.46
FOXA1P55317 RNU6-643P-201ENST00000384018 107 ntBASIC-0.31□□□□□ -2.46
FOXA1P55317 Y_RNA.531-201ENST00000384589 121 ntBASIC-0.31□□□□□ -2.46
FOXA1P55317 SNORA75.1-201ENST00000391130 148 ntBASIC-0.31□□□□□ -2.46
FOXA1P55317 Y_RNA.797-201ENST00000515977 94 ntBASIC-0.31□□□□□ -2.46
FOXA1P55317 RNU6-758P-201ENST00000516292 89 ntBASIC-0.31□□□□□ -2.46
FOXA1P55317 AL356055.1-201ENST00000602528 446 ntBASIC-0.31□□□□□ -2.46
FOXA1P55317 AL670379.3-201ENST00000605040 251 ntBASIC-0.31□□□□□ -2.46
FOXA1P55317 RNU7-10P-201ENST00000607194 63 ntBASIC-0.31□□□□□ -2.46
FOXA1P55317 Y_RNA.52-201ENST00000362760 96 ntBASIC-0.32□□□□□ -2.46
FOXA1P55317 Y_RNA.292-201ENST00000364904 97 ntBASIC-0.32□□□□□ -2.46
FOXA1P55317 Y_RNA.308-201ENST00000365043 101 ntBASIC-0.32□□□□□ -2.46
FOXA1P55317 RNU6-46P-201ENST00000383860 107 ntBASIC-0.32□□□□□ -2.46
FOXA1P55317 RNU6-449P-201ENST00000383914 107 ntBASIC-0.32□□□□□ -2.46
FOXA1P55317 Y_RNA.518-201ENST00000384552 113 ntBASIC-0.32□□□□□ -2.46
FOXA1P55317 MIR635-201ENST00000384830 98 ntBASIC-0.32□□□□□ -2.46
FOXA1P55317 MIR604-201ENST00000384880 94 ntBASIC-0.32□□□□□ -2.46
FOXA1P55317 MIR599-201ENST00000385069 95 ntBASIC-0.32□□□□□ -2.46
FOXA1P55317 SNORD110-201ENST00000408189 75 ntBASIC-0.32□□□□□ -2.46
FOXA1P55317 MIR1302-6-201ENST00000408466 90 ntBASIC-0.32□□□□□ -2.46
FOXA1P55317 AC006210.1-201ENST00000424882 111 ntBASIC-0.32□□□□□ -2.46
FOXA1P55317 TRAJ51-201ENST00000504127 63 ntBASIC-0.32□□□□□ -2.46
FOXA1P55317 RNU2-35P-201ENST00000516446 142 ntBASIC-0.32□□□□□ -2.46
FOXA1P55317 MRPS18CP4-201ENST00000535821 231 ntBASIC-0.32□□□□□ -2.46
FOXA1P55317 Y_RNA.125-201ENST00000363371 111 ntBASIC-0.33□□□□□ -2.46
FOXA1P55317 RNU6-690P-201ENST00000365242 106 ntBASIC-0.33□□□□□ -2.46
FOXA1P55317 RNU6-639P-201ENST00000384074 107 ntBASIC-0.33□□□□□ -2.46
FOXA1P55317 Y_RNA.461-201ENST00000384263 103 ntBASIC-0.33□□□□□ -2.46
FOXA1P55317 MIR106A-201ENST00000384870 81 ntBASIC-0.33□□□□□ -2.46
FOXA1P55317 RNU6-493P-201ENST00000391321 108 ntBASIC-0.33□□□□□ -2.46
FOXA1P55317 MIR1270-201ENST00000459320 83 ntBASIC-0.33□□□□□ -2.46
FOXA1P55317 RNA5SP236-201ENST00000516169 116 ntBASIC-0.33□□□□□ -2.46
FOXA1P55317 CR383656.4-201ENST00000546909 122 ntBASIC-0.33□□□□□ -2.46
FOXA1P55317 NAMPTP3-201ENST00000569273 224 ntBASIC-0.33□□□□□ -2.46
FOXA1P55317 MIR8062-201ENST00000621515 85 ntBASIC-0.33□□□□□ -2.46
FOXA1P55317 Y_RNA.54-201ENST00000362766 105 ntBASIC-0.34□□□□□ -2.46
FOXA1P55317 Y_RNA.61-201ENST00000362835 102 ntBASIC-0.34□□□□□ -2.46
FOXA1P55317 RNU6-238P-201ENST00000363313 106 ntBASIC-0.34□□□□□ -2.46
FOXA1P55317 Y_RNA.277-201ENST00000364754 102 ntBASIC-0.34□□□□□ -2.46
FOXA1P55317 Y_RNA.352-201ENST00000365439 102 ntBASIC-0.34□□□□□ -2.46
FOXA1P55317 RNU6-1321P-201ENST00000390905 107 ntBASIC-0.34□□□□□ -2.46
FOXA1P55317 AC097635.1-201ENST00000450678 155 ntBASIC-0.34□□□□□ -2.46
FOXA1P55317 RNU6-635P-201ENST00000516651 102 ntBASIC-0.34□□□□□ -2.46
FOXA1P55317 MIR4500-201ENST00000579472 76 ntBASIC-0.34□□□□□ -2.46
FOXA1P55317 U6.104-201ENST00000637979 90 ntBASIC-0.34□□□□□ -2.46
FOXA1P55317 SNORD95.1-201ENST00000364099 68 ntBASIC-0.35□□□□□ -2.47
FOXA1P55317 Y_RNA.357-201ENST00000365487 109 ntBASIC-0.35□□□□□ -2.47
FOXA1P55317 RNU6-472P-201ENST00000384299 107 ntBASIC-0.35□□□□□ -2.47
FOXA1P55317 MIR876-201ENST00000401147 81 ntBASIC-0.35□□□□□ -2.47
FOXA1P55317 BX276092.1-201ENST00000427368 251 ntBASIC-0.35□□□□□ -2.47
FOXA1P55317 RNA5SP484-201ENST00000458857 111 ntBASIC-0.35□□□□□ -2.47
FOXA1P55317 AC108676.2-201ENST00000605225 163 ntBASIC-0.35□□□□□ -2.47
FOXA1P55317 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-0.35□□□□□ -2.47
FOXA1P55317 AC084368.1-201ENST00000620935 65 ntBASIC-0.35□□□□□ -2.47
FOXA1P55317 Y_RNA.121-201ENST00000363309 113 ntBASIC-0.36□□□□□ -2.47
FOXA1P55317 RNU6-509P-201ENST00000363519 107 ntBASIC-0.36□□□□□ -2.47
FOXA1P55317 Y_RNA.182-201ENST00000363880 111 ntBASIC-0.36□□□□□ -2.47
FOXA1P55317 RNU6-865P-201ENST00000364772 107 ntBASIC-0.36□□□□□ -2.47
FOXA1P55317 Y_RNA.521-201ENST00000384560 114 ntBASIC-0.36□□□□□ -2.47
FOXA1P55317 Y_RNA.552-201ENST00000384665 112 ntBASIC-0.36□□□□□ -2.47
FOXA1P55317 Y_RNA.571-201ENST00000384753 98 ntBASIC-0.36□□□□□ -2.47
FOXA1P55317 MTATP8P1-201ENST00000467115 207 ntBASIC-0.36□□□□□ -2.47
FOXA1P55317 RNU6-320P-201ENST00000516511 106 ntBASIC-0.36□□□□□ -2.47
FOXA1P55317 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC-0.36□□□□□ -2.47
FOXA1P55317 MIR148A-201ENST00000362215 68 ntBASIC-0.37□□□□□ -2.47
FOXA1P55317 RNY4P3-201ENST00000365254 95 ntBASIC-0.37□□□□□ -2.47
FOXA1P55317 RNY4P28-201ENST00000365281 93 ntBASIC-0.37□□□□□ -2.47
FOXA1P55317 Y_RNA.448-201ENST00000384185 108 ntBASIC-0.37□□□□□ -2.47
FOXA1P55317 MIR206-201ENST00000384872 86 ntBASIC-0.37□□□□□ -2.47
FOXA1P55317 MIR516B1-201ENST00000385211 90 ntBASIC-0.37□□□□□ -2.47
FOXA1P55317 RNA5SP451-201ENST00000410588 110 ntBASIC-0.37□□□□□ -2.47
FOXA1P55317 RNU4-69P-201ENST00000410677 143 ntBASIC-0.37□□□□□ -2.47
FOXA1P55317 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC-0.37□□□□□ -2.47
FOXA1P55317 MTND4LP11-201ENST00000422184 280 ntBASIC-0.37□□□□□ -2.47
FOXA1P55317 MTCYBP6-201ENST00000441810 138 ntBASIC-0.37□□□□□ -2.47
FOXA1P55317 RNU7-48P-201ENST00000458875 63 ntBASIC-0.37□□□□□ -2.47
FOXA1P55317 MTND1P19-201ENST00000511780 315 ntBASIC-0.37□□□□□ -2.47
FOXA1P55317 RNU6-240P-201ENST00000516098 97 ntBASIC-0.37□□□□□ -2.47
FOXA1P55317 SNORA25.13-201ENST00000516395 103 ntBASIC-0.37□□□□□ -2.47
FOXA1P55317 MIR4308-201ENST00000580634 81 ntBASIC-0.37□□□□□ -2.47
FOXA1P55317 MIR3920-201ENST00000581751 86 ntBASIC-0.37□□□□□ -2.47
FOXA1P55317 AC011603.4-201ENST00000611325 277 ntBASIC-0.37□□□□□ -2.47
FOXA1P55317 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC-0.37□□□□□ -2.47
FOXA1P55317 RNU6-275P-201ENST00000364910 107 ntBASIC-0.38□□□□□ -2.47
FOXA1P55317 Y_RNA.323-201ENST00000365157 109 ntBASIC-0.38□□□□□ -2.47
FOXA1P55317 SNORD49B-201ENST00000365172 72 ntBASIC-0.38□□□□□ -2.47
FOXA1P55317 AC109327.2-201ENST00000448339 378 ntBASIC-0.38□□□□□ -2.47
FOXA1P55317 AC138907.4-201ENST00000570107 226 ntBASIC-0.38□□□□□ -2.47
FOXA1P55317 AC021443.1-201ENST00000604478 211 ntBASIC-0.38□□□□□ -2.47
FOXA1P55317 MIR3666-201ENST00000607845 111 ntBASIC-0.38□□□□□ -2.47
FOXA1P55317 RNU6-1082P-201ENST00000364574 107 ntBASIC-0.39□□□□□ -2.47
FOXA1P55317 Y_RNA.396-201ENST00000383949 103 ntBASIC-0.39□□□□□ -2.47
FOXA1P55317 RNU6-768P-201ENST00000384683 107 ntBASIC-0.39□□□□□ -2.47
FOXA1P55317 MIR548I2-201ENST00000408348 149 ntBASIC-0.39□□□□□ -2.47
FOXA1P55317 snoU13.19-201ENST00000459148 104 ntBASIC-0.39□□□□□ -2.47
FOXA1P55317 RNU7-164P-201ENST00000459221 62 ntBASIC-0.39□□□□□ -2.47
FOXA1P55317 RNU7-123P-201ENST00000515911 60 ntBASIC-0.39□□□□□ -2.47
FOXA1P55317 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC-0.39□□□□□ -2.47
FOXA1P55317 Y_RNA.98-201ENST00000363109 102 ntBASIC-0.4□□□□□ -2.47
FOXA1P55317 RNA5SP368-201ENST00000364298 116 ntBASIC-0.4□□□□□ -2.47
Retrieved 100 of 98,524 protein–RNA pairs in 169.1 ms