Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 Y_RNA.258-201ENST00000364613 105 ntBASIC0.42□□□□□ -2.34
TNFRSF4P43489 RNU7-197P-201ENST00000458836 62 ntBASIC0.42□□□□□ -2.34
TNFRSF4P43489 RNU6-469P-201ENST00000516253 101 ntBASIC0.42□□□□□ -2.34
TNFRSF4P43489 Y_RNA.692-201ENST00000516627 105 ntBASIC0.42□□□□□ -2.34
TNFRSF4P43489 Y_RNA.697-201ENST00000516776 113 ntBASIC0.42□□□□□ -2.34
TNFRSF4P43489 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.42□□□□□ -2.34
TNFRSF4P43489 AP003327.1-201ENST00000529684 127 ntBASIC0.42□□□□□ -2.34
TNFRSF4P43489 MIR548X2-201ENST00000579776 100 ntBASIC0.42□□□□□ -2.34
TNFRSF4P43489 MIR3671-201ENST00000580455 88 ntBASIC0.42□□□□□ -2.34
TNFRSF4P43489 AC108081.1-201ENST00000604358 221 ntBASIC0.42□□□□□ -2.34
TNFRSF4P43489 U6.109-201ENST00000636749 87 ntBASIC0.42□□□□□ -2.34
TNFRSF4P43489 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.42□□□□□ -2.34
TNFRSF4P43489 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.41□□□□□ -2.34
TNFRSF4P43489 RNA5SP133-201ENST00000363368 119 ntBASIC0.41□□□□□ -2.34
TNFRSF4P43489 RNU4-69P-201ENST00000410677 143 ntBASIC0.41□□□□□ -2.34
TNFRSF4P43489 AC096949.1-201ENST00000412047 152 ntBASIC0.41□□□□□ -2.34
TNFRSF4P43489 AC108059.2-201ENST00000434626 151 ntBASIC0.41□□□□□ -2.34
TNFRSF4P43489 RNU7-137P-201ENST00000516788 62 ntBASIC0.41□□□□□ -2.34
TNFRSF4P43489 AP001328.1-201ENST00000528550 176 ntBASIC0.41□□□□□ -2.34
TNFRSF4P43489 AC105081.1-201ENST00000617727 106 ntBASIC0.41□□□□□ -2.34
TNFRSF4P43489 AC092634.7-201ENST00000621022 103 ntBASIC0.41□□□□□ -2.34
TNFRSF4P43489 Y_RNA.299-201ENST00000364973 94 ntBASIC0.4□□□□□ -2.35
TNFRSF4P43489 Y_RNA.400-201ENST00000383963 111 ntBASIC0.4□□□□□ -2.35
TNFRSF4P43489 Y_RNA.420-201ENST00000384043 110 ntBASIC0.4□□□□□ -2.35
TNFRSF4P43489 Y_RNA.555-201ENST00000384673 110 ntBASIC0.4□□□□□ -2.35
TNFRSF4P43489 RNU6-1194P-201ENST00000516208 104 ntBASIC0.4□□□□□ -2.35
TNFRSF4P43489 RNU6-765P-201ENST00000516916 99 ntBASIC0.4□□□□□ -2.35
TNFRSF4P43489 MTND5P41-201ENST00000517498 206 ntBASIC0.4□□□□□ -2.35
TNFRSF4P43489 AC022523.2-201ENST00000561045 150 ntBASIC0.4□□□□□ -2.35
TNFRSF4P43489 MIR3678-201ENST00000578455 94 ntBASIC0.4□□□□□ -2.35
TNFRSF4P43489 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.4□□□□□ -2.35
TNFRSF4P43489 AC021753.1-201ENST00000635724 168 ntBASIC0.4□□□□□ -2.35
TNFRSF4P43489 Y_RNA.215-201ENST00000364204 112 ntBASIC0.39□□□□□ -2.35
TNFRSF4P43489 Y_RNA.567-201ENST00000384736 106 ntBASIC0.39□□□□□ -2.35
TNFRSF4P43489 MIR644A-201ENST00000385262 94 ntBASIC0.39□□□□□ -2.35
TNFRSF4P43489 SNORD77B-201ENST00000391112 67 ntBASIC0.39□□□□□ -2.35
TNFRSF4P43489 RNU6-531P-201ENST00000516694 104 ntBASIC0.39□□□□□ -2.35
TNFRSF4P43489 MTND5P34-201ENST00000568888 325 ntBASIC0.39□□□□□ -2.35
TNFRSF4P43489 AL359881.1-201ENST00000602916 267 ntBASIC0.39□□□□□ -2.35
TNFRSF4P43489 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.39□□□□□ -2.35
TNFRSF4P43489 uc_338.16-201ENST00000621804 95 ntBASIC0.39□□□□□ -2.35
TNFRSF4P43489 Y_RNA.32-201ENST00000362589 110 ntBASIC0.38□□□□□ -2.35
TNFRSF4P43489 Y_RNA.85-201ENST00000363014 111 ntBASIC0.38□□□□□ -2.35
TNFRSF4P43489 RNU4-58P-201ENST00000363192 141 ntBASIC0.38□□□□□ -2.35
TNFRSF4P43489 SNORD114-10-201ENST00000363409 72 ntBASIC0.38□□□□□ -2.35
TNFRSF4P43489 Y_RNA.174-201ENST00000363781 105 ntBASIC0.38□□□□□ -2.35
TNFRSF4P43489 Y_RNA.294-201ENST00000364916 102 ntBASIC0.38□□□□□ -2.35
TNFRSF4P43489 RNU6-535P-201ENST00000384722 107 ntBASIC0.38□□□□□ -2.35
TNFRSF4P43489 RNA5SP94-201ENST00000516917 108 ntBASIC0.38□□□□□ -2.35
TNFRSF4P43489 MIR3121-201ENST00000579680 77 ntBASIC0.38□□□□□ -2.35
TNFRSF4P43489 MIR3668-201ENST00000582138 75 ntBASIC0.38□□□□□ -2.35
TNFRSF4P43489 AL109933.3-201ENST00000619095 188 ntBASIC0.38□□□□□ -2.35
TNFRSF4P43489 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.38□□□□□ -2.35
TNFRSF4P43489 MIR101-2-201ENST00000362195 79 ntBASIC0.37□□□□□ -2.35
TNFRSF4P43489 Y_RNA.488-201ENST00000384403 102 ntBASIC0.37□□□□□ -2.35
TNFRSF4P43489 Y_RNA.536-201ENST00000384621 113 ntBASIC0.37□□□□□ -2.35
TNFRSF4P43489 RNU6-291P-201ENST00000384720 107 ntBASIC0.37□□□□□ -2.35
TNFRSF4P43489 SNORD71-201ENST00000411292 86 ntBASIC0.37□□□□□ -2.35
TNFRSF4P43489 SNORA68.3-201ENST00000515906 83 ntBASIC0.37□□□□□ -2.35
TNFRSF4P43489 SNORA31.14-201ENST00000516728 116 ntBASIC0.37□□□□□ -2.35
TNFRSF4P43489 AC138749.4-201ENST00000563970 127 ntBASIC0.37□□□□□ -2.35
TNFRSF4P43489 Y_RNA.114-201ENST00000363265 113 ntBASIC0.36□□□□□ -2.35
TNFRSF4P43489 SNORD18A-201ENST00000363753 72 ntBASIC0.36□□□□□ -2.35
TNFRSF4P43489 RNU6-647P-201ENST00000364243 107 ntBASIC0.36□□□□□ -2.35
TNFRSF4P43489 RNA5SP517-201ENST00000364724 117 ntBASIC0.36□□□□□ -2.35
TNFRSF4P43489 Y_RNA.374-201ENST00000365606 101 ntBASIC0.36□□□□□ -2.35
TNFRSF4P43489 RNU6-716P-201ENST00000365621 103 ntBASIC0.36□□□□□ -2.35
TNFRSF4P43489 MIR569-201ENST00000385228 96 ntBASIC0.36□□□□□ -2.35
TNFRSF4P43489 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.36□□□□□ -2.35
TNFRSF4P43489 MIR1197-201ENST00000408818 88 ntBASIC0.36□□□□□ -2.35
TNFRSF4P43489 MIR1270-201ENST00000459320 83 ntBASIC0.36□□□□□ -2.35
TNFRSF4P43489 RNA5SP272-201ENST00000516095 111 ntBASIC0.36□□□□□ -2.35
TNFRSF4P43489 SNORA25.18-201ENST00000607153 114 ntBASIC0.36□□□□□ -2.35
TNFRSF4P43489 AP001340.1-201ENST00000624405 217 ntBASIC0.36□□□□□ -2.35
TNFRSF4P43489 Y_RNA.119-201ENST00000363301 96 ntBASIC0.35□□□□□ -2.35
TNFRSF4P43489 Y_RNA.180-201ENST00000363867 113 ntBASIC0.35□□□□□ -2.35
TNFRSF4P43489 RNU6-1229P-201ENST00000364295 107 ntBASIC0.35□□□□□ -2.35
TNFRSF4P43489 Y_RNA.448-201ENST00000384185 108 ntBASIC0.35□□□□□ -2.35
TNFRSF4P43489 RNU6-1104P-201ENST00000384723 104 ntBASIC0.35□□□□□ -2.35
TNFRSF4P43489 MIR206-201ENST00000384872 86 ntBASIC0.35□□□□□ -2.35
TNFRSF4P43489 SNORA40.8-201ENST00000411034 126 ntBASIC0.35□□□□□ -2.35
TNFRSF4P43489 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.35□□□□□ -2.35
TNFRSF4P43489 RNU6-426P-201ENST00000516464 97 ntBASIC0.35□□□□□ -2.35
TNFRSF4P43489 SNORA62.5-201ENST00000516634 120 ntBASIC0.35□□□□□ -2.35
TNFRSF4P43489 U7.2-201ENST00000607576 63 ntBASIC0.35□□□□□ -2.35
TNFRSF4P43489 Y_RNA.30-201ENST00000362572 97 ntBASIC0.34□□□□□ -2.36
TNFRSF4P43489 Y_RNA.170-201ENST00000363746 110 ntBASIC0.34□□□□□ -2.36
TNFRSF4P43489 MIRLET7F2-201ENST00000385277 83 ntBASIC0.34□□□□□ -2.36
TNFRSF4P43489 RNU6-1321P-201ENST00000390905 107 ntBASIC0.34□□□□□ -2.36
TNFRSF4P43489 MIR1263-201ENST00000408324 86 ntBASIC0.34□□□□□ -2.36
TNFRSF4P43489 RN7SKP19-201ENST00000516016 252 ntBASIC0.34□□□□□ -2.36
TNFRSF4P43489 RNU7-6P-201ENST00000516845 62 ntBASIC0.34□□□□□ -2.36
TNFRSF4P43489 IGKV1-22-201ENST00000524313 326 ntBASIC0.34□□□□□ -2.36
TNFRSF4P43489 MIRLET7D-201ENST00000362263 87 ntBASIC0.33□□□□□ -2.36
TNFRSF4P43489 Y_RNA.464-201ENST00000384282 110 ntBASIC0.33□□□□□ -2.36
TNFRSF4P43489 RNU6-616P-201ENST00000384353 107 ntBASIC0.33□□□□□ -2.36
TNFRSF4P43489 SNORA8.2-201ENST00000384372 139 ntBASIC0.33□□□□□ -2.36
TNFRSF4P43489 MIR759-201ENST00000390224 91 ntBASIC0.33□□□□□ -2.36
TNFRSF4P43489 RNU7-48P-201ENST00000458875 63 ntBASIC0.33□□□□□ -2.36
TNFRSF4P43489 RNU6-135P-201ENST00000516769 101 ntBASIC0.33□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 185.5 ms