Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 MIR3613-201ENST00000579844 87 ntBASIC1.02□□□□□ -2.25
HOXD3P31249 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.02□□□□□ -2.25
HOXD3P31249 MIR450A1-201ENST00000362262 91 ntBASIC1.01□□□□□ -2.25
HOXD3P31249 RNU6-369P-201ENST00000362515 102 ntBASIC1.01□□□□□ -2.25
HOXD3P31249 Y_RNA.49-201ENST00000362714 112 ntBASIC1.01□□□□□ -2.25
HOXD3P31249 RNU1-36P-201ENST00000365130 165 ntBASIC1.01□□□□□ -2.25
HOXD3P31249 Y_RNA.323-201ENST00000365157 109 ntBASIC1.01□□□□□ -2.25
HOXD3P31249 Y_RNA.360-201ENST00000365512 102 ntBASIC1.01□□□□□ -2.25
HOXD3P31249 RNU6-409P-201ENST00000384114 104 ntBASIC1.01□□□□□ -2.25
HOXD3P31249 MIR34C-201ENST00000384831 77 ntBASIC1.01□□□□□ -2.25
HOXD3P31249 MIR1912-201ENST00000410389 80 ntBASIC1.01□□□□□ -2.25
HOXD3P31249 SNORD124-201ENST00000459577 104 ntBASIC1.01□□□□□ -2.25
HOXD3P31249 RNA5SP220-201ENST00000516298 104 ntBASIC1.01□□□□□ -2.25
HOXD3P31249 RNA5SP61-201ENST00000516453 100 ntBASIC1.01□□□□□ -2.25
HOXD3P31249 MIR4491-201ENST00000581087 68 ntBASIC1.01□□□□□ -2.25
HOXD3P31249 MIR376B-201ENST00000614515 100 ntBASIC1.01□□□□□ -2.25
HOXD3P31249 AL512310.12-203ENST00000640543 90 ntBASIC1.01□□□□□ -2.25
HOXD3P31249 Y_RNA.247-201ENST00000364500 92 ntBASIC1□□□□□ -2.25
HOXD3P31249 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1□□□□□ -2.25
HOXD3P31249 MIR577-201ENST00000385196 96 ntBASIC1□□□□□ -2.25
HOXD3P31249 MT-TF-201ENST00000387314 71 ntBASIC1□□□□□ -2.25
HOXD3P31249 MIR758-201ENST00000390227 88 ntBASIC1□□□□□ -2.25
HOXD3P31249 SNORD12-201ENST00000391002 90 ntBASIC1□□□□□ -2.25
HOXD3P31249 RPS26P5-201ENST00000418544 335 ntBASIC1□□□□□ -2.25
HOXD3P31249 AC004223.1-201ENST00000479840 271 ntBASIC1□□□□□ -2.25
HOXD3P31249 SNORA25.16-201ENST00000516741 121 ntBASIC1□□□□□ -2.25
HOXD3P31249 AC138749.4-201ENST00000563970 127 ntBASIC1□□□□□ -2.25
HOXD3P31249 MIR96-201ENST00000362288 78 ntBASIC0.99□□□□□ -2.25
HOXD3P31249 RNU6-403P-201ENST00000363163 104 ntBASIC0.99□□□□□ -2.25
HOXD3P31249 RNA5SP133-201ENST00000363368 119 ntBASIC0.99□□□□□ -2.25
HOXD3P31249 Y_RNA.163-201ENST00000363702 113 ntBASIC0.99□□□□□ -2.25
HOXD3P31249 Y_RNA.328-201ENST00000365208 113 ntBASIC0.99□□□□□ -2.25
HOXD3P31249 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.99□□□□□ -2.25
HOXD3P31249 SNORA40.6-201ENST00000391153 128 ntBASIC0.99□□□□□ -2.25
HOXD3P31249 Y_RNA.588-201ENST00000391254 102 ntBASIC0.99□□□□□ -2.25
HOXD3P31249 RNU6-994P-201ENST00000410507 111 ntBASIC0.99□□□□□ -2.25
HOXD3P31249 RNU7-48P-201ENST00000458875 63 ntBASIC0.99□□□□□ -2.25
HOXD3P31249 RNA5SP404-201ENST00000517118 132 ntBASIC0.99□□□□□ -2.25
HOXD3P31249 AC133485.1-201ENST00000567176 124 ntBASIC0.99□□□□□ -2.25
HOXD3P31249 MIR7974-201ENST00000615835 79 ntBASIC0.99□□□□□ -2.25
HOXD3P31249 U6.109-201ENST00000636749 87 ntBASIC0.99□□□□□ -2.25
HOXD3P31249 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
HOXD3P31249 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
HOXD3P31249 RNU6-1099P-201ENST00000363533 107 ntBASIC0.98□□□□□ -2.25
HOXD3P31249 RNU6-755P-201ENST00000364400 103 ntBASIC0.98□□□□□ -2.25
HOXD3P31249 RNA5SP480-201ENST00000516840 109 ntBASIC0.98□□□□□ -2.25
HOXD3P31249 MIR4676-201ENST00000583078 72 ntBASIC0.98□□□□□ -2.25
HOXD3P31249 MIR3660-201ENST00000584845 100 ntBASIC0.98□□□□□ -2.25
HOXD3P31249 RMST_2.1-201ENST00000617263 136 ntBASIC0.98□□□□□ -2.25
HOXD3P31249 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.98□□□□□ -2.25
HOXD3P31249 RNU6-865P-201ENST00000364772 107 ntBASIC0.97□□□□□ -2.25
HOXD3P31249 RNU6-147P-201ENST00000383983 107 ntBASIC0.97□□□□□ -2.25
HOXD3P31249 MIR1257-201ENST00000408490 117 ntBASIC0.97□□□□□ -2.25
HOXD3P31249 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.97□□□□□ -2.25
HOXD3P31249 RPS29P28-201ENST00000446439 141 ntBASIC0.97□□□□□ -2.25
HOXD3P31249 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.97□□□□□ -2.25
HOXD3P31249 RNU6-109P-201ENST00000516364 107 ntBASIC0.97□□□□□ -2.25
HOXD3P31249 RNU6-184P-201ENST00000516514 107 ntBASIC0.97□□□□□ -2.25
HOXD3P31249 RNU6-531P-201ENST00000516694 104 ntBASIC0.97□□□□□ -2.25
HOXD3P31249 AC141557.1-201ENST00000540982 400 ntBASIC0.97□□□□□ -2.25
HOXD3P31249 RNU6-1313P-201ENST00000362622 102 ntBASIC0.96□□□□□ -2.26
HOXD3P31249 Y_RNA.98-201ENST00000363109 102 ntBASIC0.96□□□□□ -2.26
HOXD3P31249 Y_RNA.119-201ENST00000363301 96 ntBASIC0.96□□□□□ -2.26
HOXD3P31249 RNU6-153P-201ENST00000364422 104 ntBASIC0.96□□□□□ -2.26
HOXD3P31249 RNU6-756P-201ENST00000383997 107 ntBASIC0.96□□□□□ -2.26
HOXD3P31249 SNORA51.5-201ENST00000384126 131 ntBASIC0.96□□□□□ -2.26
HOXD3P31249 RNU6-1201P-201ENST00000384227 107 ntBASIC0.96□□□□□ -2.26
HOXD3P31249 MIR19B1-201ENST00000384829 87 ntBASIC0.96□□□□□ -2.26
HOXD3P31249 MIR590-201ENST00000385008 97 ntBASIC0.96□□□□□ -2.26
HOXD3P31249 MIR125B2-201ENST00000385128 89 ntBASIC0.96□□□□□ -2.26
HOXD3P31249 MIR100-201ENST00000385259 80 ntBASIC0.96□□□□□ -2.26
HOXD3P31249 SNORD89-201ENST00000390981 114 ntBASIC0.96□□□□□ -2.26
HOXD3P31249 MIR1302-5-201ENST00000408164 150 ntBASIC0.96□□□□□ -2.26
HOXD3P31249 RNU4-83P-201ENST00000410863 133 ntBASIC0.96□□□□□ -2.26
HOXD3P31249 RNU6-1018P-201ENST00000516577 106 ntBASIC0.96□□□□□ -2.26
HOXD3P31249 RNU7-156P-201ENST00000517214 74 ntBASIC0.96□□□□□ -2.26
HOXD3P31249 MIR4500-201ENST00000579472 76 ntBASIC0.96□□□□□ -2.26
HOXD3P31249 MIR1-1-201ENST00000362147 71 ntBASIC0.95□□□□□ -2.26
HOXD3P31249 Y_RNA.13-201ENST00000362403 112 ntBASIC0.95□□□□□ -2.26
HOXD3P31249 RNU6-832P-201ENST00000363319 107 ntBASIC0.95□□□□□ -2.26
HOXD3P31249 RNY1P2-201ENST00000364820 117 ntBASIC0.95□□□□□ -2.26
HOXD3P31249 SNORA72.6-201ENST00000384520 129 ntBASIC0.95□□□□□ -2.26
HOXD3P31249 RNU6-447P-201ENST00000410293 104 ntBASIC0.95□□□□□ -2.26
HOXD3P31249 RNU6-1118P-201ENST00000410382 104 ntBASIC0.95□□□□□ -2.26
HOXD3P31249 RNU6-1076P-201ENST00000410397 104 ntBASIC0.95□□□□□ -2.26
HOXD3P31249 RNU6-355P-201ENST00000410427 104 ntBASIC0.95□□□□□ -2.26
HOXD3P31249 RNU6-791P-201ENST00000410467 104 ntBASIC0.95□□□□□ -2.26
HOXD3P31249 RNU6-705P-201ENST00000410601 104 ntBASIC0.95□□□□□ -2.26
HOXD3P31249 RNU6-1100P-201ENST00000410691 104 ntBASIC0.95□□□□□ -2.26
HOXD3P31249 RNU6-860P-201ENST00000410860 104 ntBASIC0.95□□□□□ -2.26
HOXD3P31249 RNU6-1217P-201ENST00000411276 104 ntBASIC0.95□□□□□ -2.26
HOXD3P31249 RNU6-785P-201ENST00000411324 104 ntBASIC0.95□□□□□ -2.26
HOXD3P31249 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.95□□□□□ -2.26
HOXD3P31249 RPS29P1-201ENST00000465274 159 ntBASIC0.95□□□□□ -2.26
HOXD3P31249 OR2A41P-201ENST00000473586 105 ntBASIC0.95□□□□□ -2.26
HOXD3P31249 RNU6-977P-201ENST00000516411 103 ntBASIC0.95□□□□□ -2.26
HOXD3P31249 RNU6-1006P-201ENST00000516998 103 ntBASIC0.95□□□□□ -2.26
HOXD3P31249 AC068338.1-201ENST00000565567 176 ntBASIC0.95□□□□□ -2.26
HOXD3P31249 AC090897.1-201ENST00000580909 226 ntBASIC0.95□□□□□ -2.26
HOXD3P31249 MIR4804-201ENST00000581683 73 ntBASIC0.95□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 279.9 ms