Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 RNU6-509P-201ENST00000363519 107 ntBASIC-0.52□□□□□ -2.49
USF1P22415 RNA5SP205-201ENST00000364653 136 ntBASIC-0.52□□□□□ -2.49
USF1P22415 RNU6-865P-201ENST00000364772 107 ntBASIC-0.52□□□□□ -2.49
USF1P22415 RNU6-474P-201ENST00000384243 107 ntBASIC-0.52□□□□□ -2.49
USF1P22415 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.52□□□□□ -2.49
USF1P22415 AL121914.1-201ENST00000450188 156 ntBASIC-0.52□□□□□ -2.49
USF1P22415 AC074198.2-201ENST00000508153 258 ntBASIC-0.52□□□□□ -2.49
USF1P22415 SNORA25.13-201ENST00000516395 103 ntBASIC-0.52□□□□□ -2.49
USF1P22415 AL442663.2-201ENST00000554385 511 ntBASIC-0.52□□□□□ -2.49
USF1P22415 NAMPTP3-201ENST00000569273 224 ntBASIC-0.52□□□□□ -2.49
USF1P22415 MIR548S-201ENST00000581352 82 ntBASIC-0.52□□□□□ -2.49
USF1P22415 MIR4282-201ENST00000583613 67 ntBASIC-0.52□□□□□ -2.49
USF1P22415 AL590491.3-201ENST00000610731 82 ntBASIC-0.52□□□□□ -2.49
USF1P22415 AC084368.1-201ENST00000620935 65 ntBASIC-0.52□□□□□ -2.49
USF1P22415 AL162726.3-218ENST00000636401 95 ntBASIC-0.52□□□□□ -2.49
USF1P22415 MIR4788-201ENST00000639104 80 ntBASIC-0.52□□□□□ -2.49
USF1P22415 Y_RNA.120-201ENST00000363304 110 ntBASIC-0.53□□□□□ -2.49
USF1P22415 RNU6-449P-201ENST00000383914 107 ntBASIC-0.53□□□□□ -2.49
USF1P22415 Y_RNA.527-201ENST00000384573 102 ntBASIC-0.53□□□□□ -2.49
USF1P22415 MIR635-201ENST00000384830 98 ntBASIC-0.53□□□□□ -2.49
USF1P22415 AC022028.1-201ENST00000412054 408 ntBASIC-0.53□□□□□ -2.49
USF1P22415 Y_RNA.679-201ENST00000516416 91 ntBASIC-0.53□□□□□ -2.49
USF1P22415 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC-0.53□□□□□ -2.49
USF1P22415 Y_RNA.804-201ENST00000615262 101 ntBASIC-0.53□□□□□ -2.49
USF1P22415 U2.14-201ENST00000615943 113 ntBASIC-0.53□□□□□ -2.49
USF1P22415 Y_RNA.416-201ENST00000384014 113 ntBASIC-0.54□□□□□ -2.5
USF1P22415 RNU6-480P-201ENST00000384332 107 ntBASIC-0.54□□□□□ -2.5
USF1P22415 SNORD75.1-201ENST00000408373 60 ntBASIC-0.54□□□□□ -2.5
USF1P22415 AC114755.3-201ENST00000481111 251 ntBASIC-0.54□□□□□ -2.5
USF1P22415 MIR4744-201ENST00000581563 82 ntBASIC-0.54□□□□□ -2.5
USF1P22415 AL359881.1-201ENST00000602916 267 ntBASIC-0.54□□□□□ -2.5
USF1P22415 Y_RNA.221-201ENST00000364248 96 ntBASIC-0.55□□□□□ -2.5
USF1P22415 MIR599-201ENST00000385069 95 ntBASIC-0.55□□□□□ -2.5
USF1P22415 MIR516B1-201ENST00000385211 90 ntBASIC-0.55□□□□□ -2.5
USF1P22415 MIR4263-201ENST00000584745 83 ntBASIC-0.55□□□□□ -2.5
USF1P22415 AC006504.6-201ENST00000590142 199 ntBASIC-0.55□□□□□ -2.5
USF1P22415 AL391099.1-201ENST00000624635 187 ntBASIC-0.55□□□□□ -2.5
USF1P22415 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.56□□□□□ -2.5
USF1P22415 Y_RNA.128-201ENST00000363391 112 ntBASIC-0.56□□□□□ -2.5
USF1P22415 Y_RNA.237-201ENST00000364439 102 ntBASIC-0.56□□□□□ -2.5
USF1P22415 Y_RNA.262-201ENST00000364641 102 ntBASIC-0.56□□□□□ -2.5
USF1P22415 Y_RNA.270-201ENST00000364693 104 ntBASIC-0.56□□□□□ -2.5
USF1P22415 AC097635.1-201ENST00000450678 155 ntBASIC-0.56□□□□□ -2.5
USF1P22415 TRAJ51-201ENST00000504127 63 ntBASIC-0.56□□□□□ -2.5
USF1P22415 MIR548AE2-201ENST00000583456 67 ntBASIC-0.56□□□□□ -2.5
USF1P22415 MIR4436A-201ENST00000585278 85 ntBASIC-0.56□□□□□ -2.5
USF1P22415 U8.6-201ENST00000364939 135 ntBASIC-0.57□□□□□ -2.5
USF1P22415 MIR3920-201ENST00000581751 86 ntBASIC-0.57□□□□□ -2.5
USF1P22415 MIR4432-201ENST00000581823 84 ntBASIC-0.57□□□□□ -2.5
USF1P22415 AC105081.1-201ENST00000617727 106 ntBASIC-0.57□□□□□ -2.5
USF1P22415 Y_RNA.153-201ENST00000363615 91 ntBASIC-0.58□□□□□ -2.5
USF1P22415 SNORA25.7-201ENST00000364375 127 ntBASIC-0.58□□□□□ -2.5
USF1P22415 Y_RNA.323-201ENST00000365157 109 ntBASIC-0.58□□□□□ -2.5
USF1P22415 Y_RNA.531-201ENST00000384589 121 ntBASIC-0.58□□□□□ -2.5
USF1P22415 RNU4-63P-201ENST00000411313 118 ntBASIC-0.58□□□□□ -2.5
USF1P22415 RNA5SP67-201ENST00000516422 131 ntBASIC-0.58□□□□□ -2.5
USF1P22415 MIR4680-201ENST00000580906 66 ntBASIC-0.58□□□□□ -2.5
USF1P22415 AC134503.1-201ENST00000633048 54 ntBASIC-0.58□□□□□ -2.5
USF1P22415 MIR335-201ENST00000362173 94 ntBASIC-0.59□□□□□ -2.5
USF1P22415 RNU6-578P-201ENST00000390980 103 ntBASIC-0.59□□□□□ -2.5
USF1P22415 RNU7-74P-201ENST00000459104 62 ntBASIC-0.59□□□□□ -2.5
USF1P22415 snoU13.11-201ENST00000459219 104 ntBASIC-0.59□□□□□ -2.5
USF1P22415 Y_RNA.711-201ENST00000516993 102 ntBASIC-0.59□□□□□ -2.5
USF1P22415 MIR3681-201ENST00000580089 72 ntBASIC-0.59□□□□□ -2.5
USF1P22415 AL627230.5-201ENST00000619807 58 ntBASIC-0.59□□□□□ -2.5
USF1P22415 AL160413.1-201ENST00000622780 310 ntBASIC-0.59□□□□□ -2.5
USF1P22415 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC-0.59□□□□□ -2.5
USF1P22415 MIR1270-201ENST00000459320 83 ntBASIC-0.6□□□□□ -2.51
USF1P22415 MIR4500-201ENST00000579472 76 ntBASIC-0.6□□□□□ -2.51
USF1P22415 RNU4-84P-201ENST00000364200 139 ntBASIC-0.61□□□□□ -2.51
USF1P22415 RNU1-141P-201ENST00000364623 158 ntBASIC-0.61□□□□□ -2.51
USF1P22415 RNU6-1144P-201ENST00000384247 104 ntBASIC-0.61□□□□□ -2.51
USF1P22415 RNY3P14-201ENST00000384309 102 ntBASIC-0.61□□□□□ -2.51
USF1P22415 MIR548I2-201ENST00000408348 149 ntBASIC-0.61□□□□□ -2.51
USF1P22415 RNU7-188P-201ENST00000517063 64 ntBASIC-0.61□□□□□ -2.51
USF1P22415 MTND4P29-201ENST00000503122 1372 ntBASIC-0.61□□□□□ -2.51
USF1P22415 RNU6-690P-201ENST00000365242 106 ntBASIC-0.62□□□□□ -2.51
USF1P22415 Y_RNA.357-201ENST00000365487 109 ntBASIC-0.62□□□□□ -2.51
USF1P22415 RNU6-643P-201ENST00000384018 107 ntBASIC-0.62□□□□□ -2.51
USF1P22415 RNU6-1201P-201ENST00000384227 107 ntBASIC-0.62□□□□□ -2.51
USF1P22415 MIR519A1-201ENST00000385257 85 ntBASIC-0.62□□□□□ -2.51
USF1P22415 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.62□□□□□ -2.51
USF1P22415 RNU6-1321P-201ENST00000390905 107 ntBASIC-0.62□□□□□ -2.51
USF1P22415 AL603914.1-201ENST00000401964 204 ntBASIC-0.62□□□□□ -2.51
USF1P22415 MIR548P-201ENST00000408336 84 ntBASIC-0.62□□□□□ -2.51
USF1P22415 MTND5P40-201ENST00000559945 246 ntBASIC-0.62□□□□□ -2.51
USF1P22415 AC093423.1-201ENST00000440817 142 ntBASIC-0.63□□□□□ -2.51
USF1P22415 RNU7-48P-201ENST00000458875 63 ntBASIC-0.63□□□□□ -2.51
USF1P22415 RNU7-13P-201ENST00000516413 62 ntBASIC-0.63□□□□□ -2.51
USF1P22415 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC-0.63□□□□□ -2.51
USF1P22415 MIR4473-201ENST00000583731 91 ntBASIC-0.63□□□□□ -2.51
USF1P22415 AC096720.1-201ENST00000604441 183 ntBASIC-0.63□□□□□ -2.51
USF1P22415 AC011603.4-201ENST00000611325 277 ntBASIC-0.63□□□□□ -2.51
USF1P22415 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC-0.63□□□□□ -2.51
USF1P22415 Y_RNA.52-201ENST00000362760 96 ntBASIC-0.64□□□□□ -2.51
USF1P22415 Y_RNA.98-201ENST00000363109 102 ntBASIC-0.64□□□□□ -2.51
USF1P22415 Y_RNA.299-201ENST00000364973 94 ntBASIC-0.64□□□□□ -2.51
USF1P22415 Y_RNA.460-201ENST00000384255 102 ntBASIC-0.64□□□□□ -2.51
USF1P22415 Y_RNA.509-201ENST00000384506 99 ntBASIC-0.64□□□□□ -2.51
USF1P22415 RNU6-713P-201ENST00000384761 107 ntBASIC-0.64□□□□□ -2.51
Retrieved 100 of 98,524 protein–RNA pairs in 168.9 ms