Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 Y_RNA.630-201ENST00000411370 108 ntBASIC0.64□□□□□ -2.31
HOXD4P09016 RNU7-56P-201ENST00000458744 62 ntBASIC0.64□□□□□ -2.31
HOXD4P09016 RNU7-102P-201ENST00000458948 62 ntBASIC0.64□□□□□ -2.31
HOXD4P09016 COX6CP6-201ENST00000490840 228 ntBASIC0.64□□□□□ -2.31
HOXD4P09016 RNU7-156P-201ENST00000517214 74 ntBASIC0.64□□□□□ -2.31
HOXD4P09016 AC008608.1-201ENST00000603910 127 ntBASIC0.64□□□□□ -2.31
HOXD4P09016 AL353765.1-201ENST00000605514 183 ntBASIC0.64□□□□□ -2.31
HOXD4P09016 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.64□□□□□ -2.31
HOXD4P09016 AC010487.4-201ENST00000637027 61 ntBASIC0.64□□□□□ -2.31
HOXD4P09016 RNU6-403P-201ENST00000363163 104 ntBASIC0.63□□□□□ -2.31
HOXD4P09016 SNORD114-23-201ENST00000363536 72 ntBASIC0.63□□□□□ -2.31
HOXD4P09016 Y_RNA.213-201ENST00000364178 111 ntBASIC0.63□□□□□ -2.31
HOXD4P09016 RNU6-80P-201ENST00000384195 107 ntBASIC0.63□□□□□ -2.31
HOXD4P09016 RNU6-364P-201ENST00000384387 107 ntBASIC0.63□□□□□ -2.31
HOXD4P09016 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.63□□□□□ -2.31
HOXD4P09016 RNU6-733P-201ENST00000410759 104 ntBASIC0.63□□□□□ -2.31
HOXD4P09016 TMSB4XP3-201ENST00000445144 114 ntBASIC0.63□□□□□ -2.31
HOXD4P09016 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.63□□□□□ -2.31
HOXD4P09016 MIR4491-201ENST00000581087 68 ntBASIC0.63□□□□□ -2.31
HOXD4P09016 SNORD92-201ENST00000585078 85 ntBASIC0.63□□□□□ -2.31
HOXD4P09016 AC025166.1-201ENST00000612411 163 ntBASIC0.63□□□□□ -2.31
HOXD4P09016 AC105081.1-201ENST00000617727 106 ntBASIC0.63□□□□□ -2.31
HOXD4P09016 AC087741.2-201ENST00000619415 172 ntBASIC0.63□□□□□ -2.31
HOXD4P09016 MTND5P18-201ENST00000445624 1801 ntBASIC0.62□□□□□ -2.31
HOXD4P09016 Y_RNA.42-201ENST00000362660 108 ntBASIC0.62□□□□□ -2.31
HOXD4P09016 Y_RNA.71-201ENST00000362892 104 ntBASIC0.62□□□□□ -2.31
HOXD4P09016 SNORD114-10-201ENST00000363409 72 ntBASIC0.62□□□□□ -2.31
HOXD4P09016 RNU6-616P-201ENST00000384353 107 ntBASIC0.62□□□□□ -2.31
HOXD4P09016 RNU6-110P-201ENST00000384508 104 ntBASIC0.62□□□□□ -2.31
HOXD4P09016 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.62□□□□□ -2.31
HOXD4P09016 SNORD77B-201ENST00000391112 67 ntBASIC0.62□□□□□ -2.31
HOXD4P09016 RNU1-119P-201ENST00000391122 165 ntBASIC0.62□□□□□ -2.31
HOXD4P09016 RNU7-6P-201ENST00000516845 62 ntBASIC0.62□□□□□ -2.31
HOXD4P09016 MIR3163-201ENST00000581592 73 ntBASIC0.62□□□□□ -2.31
HOXD4P09016 MIR8066-201ENST00000617280 78 ntBASIC0.62□□□□□ -2.31
HOXD4P09016 AL157777.2-201ENST00000258070 137 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 Y_RNA.13-201ENST00000362403 112 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 RNA5SP347-201ENST00000362445 119 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 Y_RNA.374-201ENST00000365606 101 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 SNORA72.6-201ENST00000384520 129 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 MIR206-201ENST00000384872 86 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 RNU6-447P-201ENST00000410293 104 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 RNU6-1118P-201ENST00000410382 104 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 RNU6-1076P-201ENST00000410397 104 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 RNU6-355P-201ENST00000410427 104 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 RNU6-791P-201ENST00000410467 104 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 RNU6-705P-201ENST00000410601 104 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 RNU6-1100P-201ENST00000410691 104 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 RNU6-860P-201ENST00000410860 104 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 RNU6-1217P-201ENST00000411276 104 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 RNU6-785P-201ENST00000411324 104 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 AC244098.3-201ENST00000424803 96 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 RNU6-659P-201ENST00000516454 104 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 SNORA25.16-201ENST00000516741 121 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 Y_RNA.712-201ENST00000517011 92 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 AC011195.1-201ENST00000578177 177 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 U6.90-201ENST00000614007 104 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 U6.70-201ENST00000620287 104 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 RNA5SP133-201ENST00000363368 119 ntBASIC0.6□□□□□ -2.31
HOXD4P09016 RNA5SP457-201ENST00000363657 124 ntBASIC0.6□□□□□ -2.31
HOXD4P09016 RNU6-81P-201ENST00000365608 104 ntBASIC0.6□□□□□ -2.31
HOXD4P09016 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.6□□□□□ -2.31
HOXD4P09016 SNORD116-14-201ENST00000383894 92 ntBASIC0.6□□□□□ -2.31
HOXD4P09016 SNORD116-17-201ENST00000383929 92 ntBASIC0.6□□□□□ -2.31
HOXD4P09016 SNORD116-15-201ENST00000384445 92 ntBASIC0.6□□□□□ -2.31
HOXD4P09016 RNU6-959P-201ENST00000384671 107 ntBASIC0.6□□□□□ -2.31
HOXD4P09016 SNORD116-19-201ENST00000384729 92 ntBASIC0.6□□□□□ -2.31
HOXD4P09016 MIR573-201ENST00000384964 99 ntBASIC0.6□□□□□ -2.31
HOXD4P09016 MIR759-201ENST00000390224 91 ntBASIC0.6□□□□□ -2.31
HOXD4P09016 RNU6-1321P-201ENST00000390905 107 ntBASIC0.6□□□□□ -2.31
HOXD4P09016 RNU6-1307P-201ENST00000391012 103 ntBASIC0.6□□□□□ -2.31
HOXD4P09016 AC090897.1-201ENST00000580909 226 ntBASIC0.6□□□□□ -2.31
HOXD4P09016 MIR3910-1-201ENST00000580936 111 ntBASIC0.6□□□□□ -2.31
HOXD4P09016 Y_RNA.773-201ENST00000607168 90 ntBASIC0.6□□□□□ -2.31
HOXD4P09016 MIR6082-201ENST00000613604 109 ntBASIC0.6□□□□□ -2.31
HOXD4P09016 U6.109-201ENST00000636749 87 ntBASIC0.6□□□□□ -2.31
HOXD4P09016 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.6□□□□□ -2.31
HOXD4P09016 SNORD115-19-201ENST00000363098 82 ntBASIC0.59□□□□□ -2.31
HOXD4P09016 SNORD115-18-201ENST00000363293 82 ntBASIC0.59□□□□□ -2.31
HOXD4P09016 SNORD115-17-201ENST00000364612 82 ntBASIC0.59□□□□□ -2.31
HOXD4P09016 Y_RNA.346-201ENST00000365385 112 ntBASIC0.59□□□□□ -2.31
HOXD4P09016 Y_RNA.448-201ENST00000384185 108 ntBASIC0.59□□□□□ -2.31
HOXD4P09016 AC138749.4-201ENST00000563970 127 ntBASIC0.59□□□□□ -2.31
HOXD4P09016 MIR4711-201ENST00000578274 70 ntBASIC0.59□□□□□ -2.31
HOXD4P09016 MIR3914-2-201ENST00000637339 95 ntBASIC0.59□□□□□ -2.31
HOXD4P09016 MIR924-201ENST00000638017 53 ntBASIC0.59□□□□□ -2.31
HOXD4P09016 Y_RNA.127-201ENST00000363386 109 ntBASIC0.58□□□□□ -2.32
HOXD4P09016 MIR548D2-201ENST00000384955 97 ntBASIC0.58□□□□□ -2.32
HOXD4P09016 RNA5SP193-201ENST00000410353 107 ntBASIC0.58□□□□□ -2.32
HOXD4P09016 RNU7-2P-201ENST00000516096 62 ntBASIC0.58□□□□□ -2.32
HOXD4P09016 RNU6-1333P-201ENST00000516162 93 ntBASIC0.58□□□□□ -2.32
HOXD4P09016 SNORD33.1-201ENST00000516213 88 ntBASIC0.58□□□□□ -2.32
HOXD4P09016 MIR1255B1-201ENST00000636325 63 ntBASIC0.58□□□□□ -2.32
HOXD4P09016 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.57□□□□□ -2.32
HOXD4P09016 RNU6-531P-201ENST00000516694 104 ntBASIC0.57□□□□□ -2.32
HOXD4P09016 RNU6-448P-201ENST00000517052 107 ntBASIC0.57□□□□□ -2.32
HOXD4P09016 DEFB131E-201ENST00000532329 154 ntBASIC0.57□□□□□ -2.32
HOXD4P09016 MIR3612-201ENST00000579753 87 ntBASIC0.57□□□□□ -2.32
HOXD4P09016 Y_RNA.261-201ENST00000364631 102 ntBASIC0.56□□□□□ -2.32
HOXD4P09016 RNY1P2-201ENST00000364820 117 ntBASIC0.56□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 187.1 ms