Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.41□□□□□ -2.18
RAPGEF3O95398 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.41□□□□□ -2.18
RAPGEF3O95398 MIR548A1-201ENST00000385041 97 ntBASIC1.4□□□□□ -2.19
RAPGEF3O95398 AC067940.1-201ENST00000458411 300 ntBASIC1.4□□□□□ -2.19
RAPGEF3O95398 uc_338.6-201ENST00000613544 171 ntBASIC1.4□□□□□ -2.19
RAPGEF3O95398 SNORD114-23-201ENST00000363536 72 ntBASIC1.39□□□□□ -2.19
RAPGEF3O95398 Y_RNA.362-201ENST00000365518 110 ntBASIC1.39□□□□□ -2.19
RAPGEF3O95398 RNU6-447P-201ENST00000410293 104 ntBASIC1.39□□□□□ -2.19
RAPGEF3O95398 RNU6-1118P-201ENST00000410382 104 ntBASIC1.39□□□□□ -2.19
RAPGEF3O95398 RNU6-1076P-201ENST00000410397 104 ntBASIC1.39□□□□□ -2.19
RAPGEF3O95398 RNU6-355P-201ENST00000410427 104 ntBASIC1.39□□□□□ -2.19
RAPGEF3O95398 RNU6-791P-201ENST00000410467 104 ntBASIC1.39□□□□□ -2.19
RAPGEF3O95398 RNU6-705P-201ENST00000410601 104 ntBASIC1.39□□□□□ -2.19
RAPGEF3O95398 RNU6-1100P-201ENST00000410691 104 ntBASIC1.39□□□□□ -2.19
RAPGEF3O95398 RNU6-860P-201ENST00000410860 104 ntBASIC1.39□□□□□ -2.19
RAPGEF3O95398 RNU6-1217P-201ENST00000411276 104 ntBASIC1.39□□□□□ -2.19
RAPGEF3O95398 RNU6-785P-201ENST00000411324 104 ntBASIC1.39□□□□□ -2.19
RAPGEF3O95398 FABP5P4-201ENST00000437203 171 ntBASIC1.39□□□□□ -2.19
RAPGEF3O95398 RPL39P34-201ENST00000477141 156 ntBASIC1.39□□□□□ -2.19
RAPGEF3O95398 RNU7-137P-201ENST00000516788 62 ntBASIC1.39□□□□□ -2.19
RAPGEF3O95398 RNA5SP404-201ENST00000517118 132 ntBASIC1.39□□□□□ -2.19
RAPGEF3O95398 RNU6-94P-201ENST00000607728 107 ntBASIC1.39□□□□□ -2.19
RAPGEF3O95398 U6.90-201ENST00000614007 104 ntBASIC1.39□□□□□ -2.19
RAPGEF3O95398 U6.70-201ENST00000620287 104 ntBASIC1.39□□□□□ -2.19
RAPGEF3O95398 AL391516.1-201ENST00000554380 2449 ntBASIC1.39□□□□□ -2.19
RAPGEF3O95398 Y_RNA.344-201ENST00000365381 112 ntBASIC1.38□□□□□ -2.19
RAPGEF3O95398 RNU6-616P-201ENST00000384353 107 ntBASIC1.38□□□□□ -2.19
RAPGEF3O95398 RPS26P5-201ENST00000418544 335 ntBASIC1.38□□□□□ -2.19
RAPGEF3O95398 RNU6-412P-201ENST00000516434 106 ntBASIC1.38□□□□□ -2.19
RAPGEF3O95398 SNORD67.1-201ENST00000516618 108 ntBASIC1.38□□□□□ -2.19
RAPGEF3O95398 AL589743.1-201ENST00000551932 2712 ntBASIC1.38□□□□□ -2.19
RAPGEF3O95398 RNU6-1290P-201ENST00000362957 109 ntBASIC1.37□□□□□ -2.19
RAPGEF3O95398 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.37□□□□□ -2.19
RAPGEF3O95398 SNORD83.1-201ENST00000411362 77 ntBASIC1.37□□□□□ -2.19
RAPGEF3O95398 snoU13.21-201ENST00000459368 105 ntBASIC1.37□□□□□ -2.19
RAPGEF3O95398 Y_RNA.85-201ENST00000363014 111 ntBASIC1.36□□□□□ -2.19
RAPGEF3O95398 Y_RNA.281-201ENST00000364774 94 ntBASIC1.36□□□□□ -2.19
RAPGEF3O95398 SNORD115-35-201ENST00000365122 82 ntBASIC1.36□□□□□ -2.19
RAPGEF3O95398 U8.15-201ENST00000390947 134 ntBASIC1.36□□□□□ -2.19
RAPGEF3O95398 MIR1257-201ENST00000408490 117 ntBASIC1.36□□□□□ -2.19
RAPGEF3O95398 RNA5SP193-201ENST00000410353 107 ntBASIC1.36□□□□□ -2.19
RAPGEF3O95398 MIR1912-201ENST00000410389 80 ntBASIC1.36□□□□□ -2.19
RAPGEF3O95398 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC1.36□□□□□ -2.19
RAPGEF3O95398 RNU7-185P-201ENST00000459215 60 ntBASIC1.36□□□□□ -2.19
RAPGEF3O95398 RNU7-2P-201ENST00000516096 62 ntBASIC1.36□□□□□ -2.19
RAPGEF3O95398 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC1.36□□□□□ -2.19
RAPGEF3O95398 AL136317.1-201ENST00000612653 226 ntBASIC1.36□□□□□ -2.19
RAPGEF3O95398 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.36□□□□□ -2.19
RAPGEF3O95398 MIR1-1-201ENST00000362147 71 ntBASIC1.35□□□□□ -2.19
RAPGEF3O95398 RNU6-363P-201ENST00000362895 105 ntBASIC1.35□□□□□ -2.19
RAPGEF3O95398 SNORD114-24-201ENST00000365029 72 ntBASIC1.35□□□□□ -2.19
RAPGEF3O95398 Y_RNA.309-201ENST00000365046 111 ntBASIC1.35□□□□□ -2.19
RAPGEF3O95398 Y_RNA.507-201ENST00000384500 99 ntBASIC1.35□□□□□ -2.19
RAPGEF3O95398 SNORD93-201ENST00000408813 74 ntBASIC1.35□□□□□ -2.19
RAPGEF3O95398 MIR4771-2-201ENST00000577758 74 ntBASIC1.35□□□□□ -2.19
RAPGEF3O95398 MIR4771-1-201ENST00000582617 74 ntBASIC1.35□□□□□ -2.19
RAPGEF3O95398 Y_RNA.773-201ENST00000607168 90 ntBASIC1.35□□□□□ -2.19
RAPGEF3O95398 AL162726.3-218ENST00000636401 95 ntBASIC1.35□□□□□ -2.19
RAPGEF3O95398 AC023934.1-201ENST00000574529 2389 ntBASIC1.35□□□□□ -2.19
RAPGEF3O95398 Y_RNA.35-201ENST00000362601 101 ntBASIC1.34□□□□□ -2.19
RAPGEF3O95398 Y_RNA.49-201ENST00000362714 112 ntBASIC1.34□□□□□ -2.19
RAPGEF3O95398 MIR206-201ENST00000384872 86 ntBASIC1.34□□□□□ -2.19
RAPGEF3O95398 MIR1827-201ENST00000408549 66 ntBASIC1.34□□□□□ -2.19
RAPGEF3O95398 RNU6ATAC41P-201ENST00000408600 126 ntBASIC1.34□□□□□ -2.19
RAPGEF3O95398 RPS29P28-201ENST00000446439 141 ntBASIC1.34□□□□□ -2.19
RAPGEF3O95398 AC133485.1-201ENST00000567176 124 ntBASIC1.34□□□□□ -2.19
RAPGEF3O95398 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.34□□□□□ -2.19
RAPGEF3O95398 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC1.34□□□□□ -2.19
RAPGEF3O95398 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC1.34□□□□□ -2.19
RAPGEF3O95398 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC1.34□□□□□ -2.19
RAPGEF3O95398 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.33□□□□□ -2.2
RAPGEF3O95398 MIR125B2-201ENST00000385128 89 ntBASIC1.33□□□□□ -2.2
RAPGEF3O95398 AC004941.2-201ENST00000427009 228 ntBASIC1.33□□□□□ -2.2
RAPGEF3O95398 U7.7-201ENST00000459276 60 ntBASIC1.33□□□□□ -2.2
RAPGEF3O95398 RNU6-1110P-201ENST00000516462 101 ntBASIC1.33□□□□□ -2.2
RAPGEF3O95398 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.33□□□□□ -2.2
RAPGEF3O95398 MIR8087-201ENST00000612745 78 ntBASIC1.33□□□□□ -2.2
RAPGEF3O95398 AL035470.1-201ENST00000622571 220 ntBASIC1.33□□□□□ -2.2
RAPGEF3O95398 Y_RNA.98-201ENST00000363109 102 ntBASIC1.32□□□□□ -2.2
RAPGEF3O95398 RNU4-67P-201ENST00000364569 141 ntBASIC1.32□□□□□ -2.2
RAPGEF3O95398 RNU1-36P-201ENST00000365130 165 ntBASIC1.32□□□□□ -2.2
RAPGEF3O95398 RNU6-816P-201ENST00000390914 107 ntBASIC1.32□□□□□ -2.2
RAPGEF3O95398 RNU6-1268P-201ENST00000391214 107 ntBASIC1.32□□□□□ -2.2
RAPGEF3O95398 RNU6-1239P-201ENST00000391310 107 ntBASIC1.32□□□□□ -2.2
RAPGEF3O95398 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC1.32□□□□□ -2.2
RAPGEF3O95398 MIR4676-201ENST00000583078 72 ntBASIC1.32□□□□□ -2.2
RAPGEF3O95398 MIR6129-201ENST00000616087 109 ntBASIC1.32□□□□□ -2.2
RAPGEF3O95398 MIR1255B1-201ENST00000636325 63 ntBASIC1.32□□□□□ -2.2
RAPGEF3O95398 SNORA63.5-201ENST00000363548 123 ntBASIC1.31□□□□□ -2.2
RAPGEF3O95398 RNY1P2-201ENST00000364820 117 ntBASIC1.31□□□□□ -2.2
RAPGEF3O95398 Y_RNA.549-201ENST00000384657 102 ntBASIC1.31□□□□□ -2.2
RAPGEF3O95398 MIR100-201ENST00000385259 80 ntBASIC1.31□□□□□ -2.2
RAPGEF3O95398 MIR942-201ENST00000401111 86 ntBASIC1.31□□□□□ -2.2
RAPGEF3O95398 MIR1285-1-201ENST00000408593 84 ntBASIC1.31□□□□□ -2.2
RAPGEF3O95398 RNU6-521P-201ENST00000516663 105 ntBASIC1.31□□□□□ -2.2
RAPGEF3O95398 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
RAPGEF3O95398 RNU6-369P-201ENST00000362515 102 ntBASIC1.3□□□□□ -2.2
RAPGEF3O95398 RNU6-409P-201ENST00000384114 104 ntBASIC1.3□□□□□ -2.2
RAPGEF3O95398 RNU6-429P-201ENST00000384582 108 ntBASIC1.3□□□□□ -2.2
RAPGEF3O95398 MIR938-201ENST00000401216 83 ntBASIC1.3□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 1068.9 ms