Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 SNORA25.18-201ENST00000607153 114 ntBASIC0.39□□□□□ -2.35
RTN3O95197 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.39□□□□□ -2.35
RTN3O95197 RNU4-58P-201ENST00000363192 141 ntBASIC0.38□□□□□ -2.35
RTN3O95197 SNORD118-201ENST00000363593 134 ntBASIC0.38□□□□□ -2.35
RTN3O95197 RNU6-535P-201ENST00000384722 107 ntBASIC0.38□□□□□ -2.35
RTN3O95197 Y_RNA.662-201ENST00000516028 97 ntBASIC0.38□□□□□ -2.35
RTN3O95197 RNU2-35P-201ENST00000516446 142 ntBASIC0.38□□□□□ -2.35
RTN3O95197 SNORA31.14-201ENST00000516728 116 ntBASIC0.38□□□□□ -2.35
RTN3O95197 MIR548AE2-201ENST00000583456 67 ntBASIC0.38□□□□□ -2.35
RTN3O95197 MIR3658-201ENST00000636291 56 ntBASIC0.38□□□□□ -2.35
RTN3O95197 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.37□□□□□ -2.35
RTN3O95197 Y_RNA.29-201ENST00000362570 113 ntBASIC0.37□□□□□ -2.35
RTN3O95197 RNU6-291P-201ENST00000384720 107 ntBASIC0.37□□□□□ -2.35
RTN3O95197 RNU7-164P-201ENST00000459221 62 ntBASIC0.37□□□□□ -2.35
RTN3O95197 RNU6-861P-201ENST00000516745 106 ntBASIC0.37□□□□□ -2.35
RTN3O95197 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.37□□□□□ -2.35
RTN3O95197 MTND5P34-201ENST00000568888 325 ntBASIC0.37□□□□□ -2.35
RTN3O95197 AC023932.2-201ENST00000603176 175 ntBASIC0.37□□□□□ -2.35
RTN3O95197 RNA5SP133-201ENST00000363368 119 ntBASIC0.36□□□□□ -2.35
RTN3O95197 Y_RNA.441-201ENST00000384123 112 ntBASIC0.36□□□□□ -2.35
RTN3O95197 RNU6-1135P-201ENST00000411083 103 ntBASIC0.36□□□□□ -2.35
RTN3O95197 SNORD44.1-201ENST00000363202 61 ntBASIC0.35□□□□□ -2.35
RTN3O95197 SNORA36.1-201ENST00000363424 132 ntBASIC0.35□□□□□ -2.35
RTN3O95197 RNU6-1229P-201ENST00000364295 107 ntBASIC0.35□□□□□ -2.35
RTN3O95197 Y_RNA.299-201ENST00000364973 94 ntBASIC0.35□□□□□ -2.35
RTN3O95197 RNU6-1327P-201ENST00000365302 105 ntBASIC0.35□□□□□ -2.35
RTN3O95197 RNU6-863P-201ENST00000515989 104 ntBASIC0.35□□□□□ -2.35
RTN3O95197 RNU7-137P-201ENST00000516788 62 ntBASIC0.35□□□□□ -2.35
RTN3O95197 AC098479.1-201ENST00000609225 154 ntBASIC0.35□□□□□ -2.35
RTN3O95197 U6.109-201ENST00000636749 87 ntBASIC0.35□□□□□ -2.35
RTN3O95197 SNORD114-10-201ENST00000363409 72 ntBASIC0.34□□□□□ -2.36
RTN3O95197 RNU6-682P-201ENST00000363843 106 ntBASIC0.34□□□□□ -2.36
RTN3O95197 RNU4-67P-201ENST00000364569 141 ntBASIC0.34□□□□□ -2.36
RTN3O95197 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.34□□□□□ -2.36
RTN3O95197 AL603914.1-201ENST00000401964 204 ntBASIC0.34□□□□□ -2.36
RTN3O95197 SNRPGP12-201ENST00000449481 213 ntBASIC0.34□□□□□ -2.36
RTN3O95197 RNA5SP134-201ENST00000516492 96 ntBASIC0.34□□□□□ -2.36
RTN3O95197 SNORD67.1-201ENST00000516618 108 ntBASIC0.34□□□□□ -2.36
RTN3O95197 RNU6-531P-201ENST00000516694 104 ntBASIC0.34□□□□□ -2.36
RTN3O95197 RNA5SP268-201ENST00000516828 124 ntBASIC0.34□□□□□ -2.36
RTN3O95197 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.34□□□□□ -2.36
RTN3O95197 AC067863.3-201ENST00000624172 122 ntBASIC0.34□□□□□ -2.36
RTN3O95197 RNU6-1099P-201ENST00000363533 107 ntBASIC0.33□□□□□ -2.36
RTN3O95197 MIRLET7F2-201ENST00000385277 83 ntBASIC0.33□□□□□ -2.36
RTN3O95197 snosnR66.1-201ENST00000391095 99 ntBASIC0.33□□□□□ -2.36
RTN3O95197 RNU7-123P-201ENST00000515911 60 ntBASIC0.33□□□□□ -2.36
RTN3O95197 Y_RNA.690-201ENST00000516603 95 ntBASIC0.33□□□□□ -2.36
RTN3O95197 SNORA81.3-201ENST00000517283 198 ntBASIC0.33□□□□□ -2.36
RTN3O95197 MIR4639-201ENST00000584938 69 ntBASIC0.33□□□□□ -2.36
RTN3O95197 MIR103A1-201ENST00000362165 78 ntBASIC0.32□□□□□ -2.36
RTN3O95197 Y_RNA.272-201ENST00000364696 102 ntBASIC0.32□□□□□ -2.36
RTN3O95197 Y_RNA.785-201ENST00000384290 109 ntBASIC0.32□□□□□ -2.36
RTN3O95197 RNU4-69P-201ENST00000410677 143 ntBASIC0.32□□□□□ -2.36
RTN3O95197 Y_RNA.651-201ENST00000459380 103 ntBASIC0.32□□□□□ -2.36
RTN3O95197 AC108740.1-201ENST00000498629 225 ntBASIC0.32□□□□□ -2.36
RTN3O95197 SCARNA16.5-201ENST00000517114 183 ntBASIC0.32□□□□□ -2.36
RTN3O95197 AC112693.2-201ENST00000556538 232 ntBASIC0.32□□□□□ -2.36
RTN3O95197 AC138749.4-201ENST00000563970 127 ntBASIC0.32□□□□□ -2.36
RTN3O95197 MIR101-2-201ENST00000362195 79 ntBASIC0.31□□□□□ -2.36
RTN3O95197 Y_RNA.257-201ENST00000364596 102 ntBASIC0.31□□□□□ -2.36
RTN3O95197 Y_RNA.298-201ENST00000364960 107 ntBASIC0.31□□□□□ -2.36
RTN3O95197 Y_RNA.366-201ENST00000365540 102 ntBASIC0.31□□□□□ -2.36
RTN3O95197 AL359881.1-201ENST00000602916 267 ntBASIC0.31□□□□□ -2.36
RTN3O95197 RNY1P11-201ENST00000363759 113 ntBASIC0.3□□□□□ -2.36
RTN3O95197 RNU6-309P-201ENST00000364573 106 ntBASIC0.3□□□□□ -2.36
RTN3O95197 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.3□□□□□ -2.36
RTN3O95197 Y_RNA.686-201ENST00000516548 134 ntBASIC0.3□□□□□ -2.36
RTN3O95197 AC004792.1-201ENST00000614523 137 ntBASIC0.3□□□□□ -2.36
RTN3O95197 MIR6828-201ENST00000636181 60 ntBASIC0.3□□□□□ -2.36
RTN3O95197 MIR6759-201ENST00000638110 65 ntBASIC0.3□□□□□ -2.36
RTN3O95197 RNU4-11P-201ENST00000365287 132 ntBASIC0.29□□□□□ -2.36
RTN3O95197 SNORD28-201ENST00000384706 75 ntBASIC0.29□□□□□ -2.36
RTN3O95197 SNORD77B-201ENST00000391112 67 ntBASIC0.29□□□□□ -2.36
RTN3O95197 RNU2-59P-201ENST00000410482 191 ntBASIC0.29□□□□□ -2.36
RTN3O95197 RNA5SP227-201ENST00000516184 113 ntBASIC0.29□□□□□ -2.36
RTN3O95197 RNA5SP47-201ENST00000517230 109 ntBASIC0.29□□□□□ -2.36
RTN3O95197 MIR6718-201ENST00000616153 80 ntBASIC0.29□□□□□ -2.36
RTN3O95197 AC091304.10-201ENST00000641554 121 ntBASIC0.29□□□□□ -2.36
RTN3O95197 Y_RNA.119-201ENST00000363301 96 ntBASIC0.28□□□□□ -2.36
RTN3O95197 RNY1P2-201ENST00000364820 117 ntBASIC0.28□□□□□ -2.36
RTN3O95197 SUMO1P3-201ENST00000439961 304 ntBASIC0.28□□□□□ -2.36
RTN3O95197 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC0.27□□□□□ -2.37
RTN3O95197 Y_RNA.56-201ENST00000362798 112 ntBASIC0.27□□□□□ -2.37
RTN3O95197 RNU6-508P-201ENST00000363231 103 ntBASIC0.27□□□□□ -2.37
RTN3O95197 MIR329-2-201ENST00000385029 84 ntBASIC0.27□□□□□ -2.37
RTN3O95197 MIR1270-201ENST00000459320 83 ntBASIC0.27□□□□□ -2.37
RTN3O95197 MIR4636-201ENST00000582271 80 ntBASIC0.27□□□□□ -2.37
RTN3O95197 MIR5093-201ENST00000583199 100 ntBASIC0.27□□□□□ -2.37
RTN3O95197 MIR7107-201ENST00000611489 80 ntBASIC0.27□□□□□ -2.37
RTN3O95197 AL137067.1-201ENST00000615933 120 ntBASIC0.27□□□□□ -2.37
RTN3O95197 AC105081.1-201ENST00000617727 106 ntBASIC0.27□□□□□ -2.37
RTN3O95197 AC244669.1-204ENST00000621564 178 ntBASIC0.26□□□□□ -2.37
RTN3O95197 RNU6-449P-201ENST00000383914 107 ntBASIC0.25□□□□□ -2.37
RTN3O95197 RNU6-429P-201ENST00000384582 108 ntBASIC0.25□□□□□ -2.37
RTN3O95197 AC073261.1-201ENST00000429409 121 ntBASIC0.25□□□□□ -2.37
RTN3O95197 RNU5E-3P-201ENST00000515913 68 ntBASIC0.25□□□□□ -2.37
RTN3O95197 Y_RNA.778-201ENST00000620203 90 ntBASIC0.25□□□□□ -2.37
RTN3O95197 SNORA63.5-201ENST00000363548 123 ntBASIC0.24□□□□□ -2.37
RTN3O95197 RNU6-151P-201ENST00000364158 107 ntBASIC0.24□□□□□ -2.37
RTN3O95197 RNA5SP245-201ENST00000364239 121 ntBASIC0.24□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 229.7 ms