Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 Y_RNA.299-201ENST00000364973 94 ntBASIC0.47□□□□□ -2.33
SSX4O60224 MIR644A-201ENST00000385262 94 ntBASIC0.47□□□□□ -2.33
SSX4O60224 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.47□□□□□ -2.33
SSX4O60224 AC092628.1-201ENST00000436250 252 ntBASIC0.47□□□□□ -2.33
SSX4O60224 Y_RNA.697-201ENST00000516776 113 ntBASIC0.47□□□□□ -2.33
SSX4O60224 MIR3121-201ENST00000579680 77 ntBASIC0.47□□□□□ -2.33
SSX4O60224 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.47□□□□□ -2.33
SSX4O60224 uc_338.16-201ENST00000621804 95 ntBASIC0.47□□□□□ -2.33
SSX4O60224 U6.109-201ENST00000636749 87 ntBASIC0.47□□□□□ -2.33
SSX4O60224 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.47□□□□□ -2.33
SSX4O60224 Y_RNA.32-201ENST00000362589 110 ntBASIC0.46□□□□□ -2.34
SSX4O60224 SNORD114-10-201ENST00000363409 72 ntBASIC0.46□□□□□ -2.34
SSX4O60224 RNA5SP517-201ENST00000364724 117 ntBASIC0.46□□□□□ -2.34
SSX4O60224 Y_RNA.536-201ENST00000384621 113 ntBASIC0.46□□□□□ -2.34
SSX4O60224 Y_RNA.692-201ENST00000516627 105 ntBASIC0.46□□□□□ -2.34
SSX4O60224 RNY4P20-201ENST00000516678 93 ntBASIC0.46□□□□□ -2.34
SSX4O60224 RNU6-531P-201ENST00000516694 104 ntBASIC0.46□□□□□ -2.34
SSX4O60224 SNORA31.14-201ENST00000516728 116 ntBASIC0.46□□□□□ -2.34
SSX4O60224 AC022523.2-201ENST00000561045 150 ntBASIC0.46□□□□□ -2.34
SSX4O60224 MIR548X2-201ENST00000579776 100 ntBASIC0.46□□□□□ -2.34
SSX4O60224 AC098479.1-201ENST00000609225 154 ntBASIC0.46□□□□□ -2.34
SSX4O60224 AC105081.1-201ENST00000617727 106 ntBASIC0.46□□□□□ -2.34
SSX4O60224 RNU4-58P-201ENST00000363192 141 ntBASIC0.45□□□□□ -2.34
SSX4O60224 Y_RNA.174-201ENST00000363781 105 ntBASIC0.45□□□□□ -2.34
SSX4O60224 Y_RNA.400-201ENST00000383963 111 ntBASIC0.45□□□□□ -2.34
SSX4O60224 RNU6-291P-201ENST00000384720 107 ntBASIC0.45□□□□□ -2.34
SSX4O60224 RNU6-535P-201ENST00000384722 107 ntBASIC0.45□□□□□ -2.34
SSX4O60224 RNU6-469P-201ENST00000516253 101 ntBASIC0.45□□□□□ -2.34
SSX4O60224 AC138749.4-201ENST00000563970 127 ntBASIC0.45□□□□□ -2.34
SSX4O60224 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.45□□□□□ -2.34
SSX4O60224 RNU6-1104P-201ENST00000384723 104 ntBASIC0.44□□□□□ -2.34
SSX4O60224 Y_RNA.567-201ENST00000384736 106 ntBASIC0.44□□□□□ -2.34
SSX4O60224 AC114737.2-201ENST00000421583 173 ntBASIC0.44□□□□□ -2.34
SSX4O60224 AC108059.2-201ENST00000434626 151 ntBASIC0.44□□□□□ -2.34
SSX4O60224 SNORA68.3-201ENST00000515906 83 ntBASIC0.44□□□□□ -2.34
SSX4O60224 MTND5P41-201ENST00000517498 206 ntBASIC0.44□□□□□ -2.34
SSX4O60224 MIR924-201ENST00000638017 53 ntBASIC0.44□□□□□ -2.34
SSX4O60224 Y_RNA.215-201ENST00000364204 112 ntBASIC0.43□□□□□ -2.34
SSX4O60224 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.43□□□□□ -2.34
SSX4O60224 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.43□□□□□ -2.34
SSX4O60224 RNU6-1194P-201ENST00000516208 104 ntBASIC0.43□□□□□ -2.34
SSX4O60224 AP001328.1-201ENST00000528550 176 ntBASIC0.43□□□□□ -2.34
SSX4O60224 MIR3671-201ENST00000580455 88 ntBASIC0.43□□□□□ -2.34
SSX4O60224 AP001340.1-201ENST00000624405 217 ntBASIC0.43□□□□□ -2.34
SSX4O60224 AC021753.1-201ENST00000635724 168 ntBASIC0.43□□□□□ -2.34
SSX4O60224 Y_RNA.119-201ENST00000363301 96 ntBASIC0.42□□□□□ -2.34
SSX4O60224 SNORD18A-201ENST00000363753 72 ntBASIC0.42□□□□□ -2.34
SSX4O60224 Y_RNA.420-201ENST00000384043 110 ntBASIC0.42□□□□□ -2.34
SSX4O60224 Y_RNA.555-201ENST00000384673 110 ntBASIC0.42□□□□□ -2.34
SSX4O60224 MIR518A1-201ENST00000385068 85 ntBASIC0.42□□□□□ -2.34
SSX4O60224 SNORD77B-201ENST00000391112 67 ntBASIC0.42□□□□□ -2.34
SSX4O60224 SNORA40.8-201ENST00000411034 126 ntBASIC0.42□□□□□ -2.34
SSX4O60224 IGKV1-22-201ENST00000524313 326 ntBASIC0.42□□□□□ -2.34
SSX4O60224 AC243829.6-201ENST00000612652 106 ntBASIC0.42□□□□□ -2.34
SSX4O60224 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.42□□□□□ -2.34
SSX4O60224 Y_RNA.114-201ENST00000363265 113 ntBASIC0.41□□□□□ -2.34
SSX4O60224 Y_RNA.115-201ENST00000363272 98 ntBASIC0.41□□□□□ -2.34
SSX4O60224 SNORA8.2-201ENST00000384372 139 ntBASIC0.41□□□□□ -2.34
SSX4O60224 MIR569-201ENST00000385228 96 ntBASIC0.41□□□□□ -2.34
SSX4O60224 SNORD71-201ENST00000411292 86 ntBASIC0.41□□□□□ -2.34
SSX4O60224 SNORA25.18-201ENST00000607153 114 ntBASIC0.41□□□□□ -2.34
SSX4O60224 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.4□□□□□ -2.34
SSX4O60224 MIR101-2-201ENST00000362195 79 ntBASIC0.4□□□□□ -2.35
SSX4O60224 SNORA36.1-201ENST00000363424 132 ntBASIC0.4□□□□□ -2.35
SSX4O60224 Y_RNA.294-201ENST00000364916 102 ntBASIC0.4□□□□□ -2.35
SSX4O60224 MIR206-201ENST00000384872 86 ntBASIC0.4□□□□□ -2.35
SSX4O60224 RNU6-1321P-201ENST00000390905 107 ntBASIC0.4□□□□□ -2.35
SSX4O60224 RNA5SP330-201ENST00000517096 96 ntBASIC0.4□□□□□ -2.35
SSX4O60224 MIRLET7D-201ENST00000362263 87 ntBASIC0.39□□□□□ -2.35
SSX4O60224 Y_RNA.30-201ENST00000362572 97 ntBASIC0.39□□□□□ -2.35
SSX4O60224 RNA5SP245-201ENST00000364239 121 ntBASIC0.39□□□□□ -2.35
SSX4O60224 RNY1P2-201ENST00000364820 117 ntBASIC0.39□□□□□ -2.35
SSX4O60224 RNU6-135P-201ENST00000516769 101 ntBASIC0.39□□□□□ -2.35
SSX4O60224 MIR8087-201ENST00000612745 78 ntBASIC0.39□□□□□ -2.35
SSX4O60224 SNORD118-201ENST00000363593 134 ntBASIC0.38□□□□□ -2.35
SSX4O60224 Y_RNA.180-201ENST00000363867 113 ntBASIC0.38□□□□□ -2.35
SSX4O60224 RNU6-716P-201ENST00000365621 103 ntBASIC0.38□□□□□ -2.35
SSX4O60224 Y_RNA.448-201ENST00000384185 108 ntBASIC0.38□□□□□ -2.35
SSX4O60224 MIRLET7F2-201ENST00000385277 83 ntBASIC0.38□□□□□ -2.35
SSX4O60224 RN7SKP19-201ENST00000516016 252 ntBASIC0.38□□□□□ -2.35
SSX4O60224 RNA5SP272-201ENST00000516095 111 ntBASIC0.38□□□□□ -2.35
SSX4O60224 SNORA63.5-201ENST00000363548 123 ntBASIC0.37□□□□□ -2.35
SSX4O60224 RNA5SP457-201ENST00000363657 124 ntBASIC0.37□□□□□ -2.35
SSX4O60224 Y_RNA.170-201ENST00000363746 110 ntBASIC0.37□□□□□ -2.35
SSX4O60224 RNU6-647P-201ENST00000364243 107 ntBASIC0.37□□□□□ -2.35
SSX4O60224 Y_RNA.258-201ENST00000364613 105 ntBASIC0.37□□□□□ -2.35
SSX4O60224 Y_RNA.374-201ENST00000365606 101 ntBASIC0.37□□□□□ -2.35
SSX4O60224 VTRNA1-3-201ENST00000365645 89 ntBASIC0.37□□□□□ -2.35
SSX4O60224 Y_RNA.464-201ENST00000384282 110 ntBASIC0.37□□□□□ -2.35
SSX4O60224 RNU6-616P-201ENST00000384353 107 ntBASIC0.37□□□□□ -2.35
SSX4O60224 Y_RNA.488-201ENST00000384403 102 ntBASIC0.37□□□□□ -2.35
SSX4O60224 RNU6-429P-201ENST00000384582 108 ntBASIC0.37□□□□□ -2.35
SSX4O60224 RNU7-48P-201ENST00000458875 63 ntBASIC0.37□□□□□ -2.35
SSX4O60224 U7.2-201ENST00000607576 63 ntBASIC0.37□□□□□ -2.35
SSX4O60224 MIR330-201ENST00000362196 94 ntBASIC0.36□□□□□ -2.35
SSX4O60224 Y_RNA.56-201ENST00000362798 112 ntBASIC0.36□□□□□ -2.35
SSX4O60224 SNORD44.1-201ENST00000363202 61 ntBASIC0.36□□□□□ -2.35
SSX4O60224 RNU6-1229P-201ENST00000364295 107 ntBASIC0.36□□□□□ -2.35
SSX4O60224 SNORD28-201ENST00000384706 75 ntBASIC0.36□□□□□ -2.35
SSX4O60224 MT-TI-201ENST00000387365 69 ntBASIC0.36□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms