Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 RNU6-138P-201ENST00000515952 107 ntBASIC0.42□□□□□ -2.34
CPSF3Q9UKF6 RNU6-765P-201ENST00000516916 99 ntBASIC0.42□□□□□ -2.34
CPSF3Q9UKF6 SNORD115-2-201ENST00000362842 82 ntBASIC0.41□□□□□ -2.34
CPSF3Q9UKF6 Y_RNA.240-201ENST00000364469 95 ntBASIC0.41□□□□□ -2.34
CPSF3Q9UKF6 RNU6-200P-201ENST00000364743 107 ntBASIC0.41□□□□□ -2.34
CPSF3Q9UKF6 SNORD115-20-201ENST00000365099 82 ntBASIC0.41□□□□□ -2.34
CPSF3Q9UKF6 Y_RNA.552-201ENST00000384665 112 ntBASIC0.41□□□□□ -2.34
CPSF3Q9UKF6 RNU2-35P-201ENST00000516446 142 ntBASIC0.41□□□□□ -2.34
CPSF3Q9UKF6 RNA5SP33-201ENST00000516687 98 ntBASIC0.41□□□□□ -2.34
CPSF3Q9UKF6 SNORA25.16-201ENST00000516741 121 ntBASIC0.41□□□□□ -2.34
CPSF3Q9UKF6 MIR4305-201ENST00000583252 102 ntBASIC0.41□□□□□ -2.34
CPSF3Q9UKF6 AC011603.4-201ENST00000611325 277 ntBASIC0.41□□□□□ -2.34
CPSF3Q9UKF6 AC243829.6-201ENST00000612652 106 ntBASIC0.41□□□□□ -2.34
CPSF3Q9UKF6 MIR7111-201ENST00000619751 72 ntBASIC0.41□□□□□ -2.34
CPSF3Q9UKF6 AC090625.1-201ENST00000357130 210 ntBASIC0.4□□□□□ -2.35
CPSF3Q9UKF6 MIRLET7D-201ENST00000362263 87 ntBASIC0.4□□□□□ -2.35
CPSF3Q9UKF6 Y_RNA.32-201ENST00000362589 110 ntBASIC0.4□□□□□ -2.35
CPSF3Q9UKF6 SNORA32-201ENST00000384072 121 ntBASIC0.4□□□□□ -2.35
CPSF3Q9UKF6 RNU7-120P-201ENST00000459334 63 ntBASIC0.4□□□□□ -2.35
CPSF3Q9UKF6 RNU6-240P-201ENST00000516098 97 ntBASIC0.4□□□□□ -2.35
CPSF3Q9UKF6 RNU6-861P-201ENST00000516745 106 ntBASIC0.4□□□□□ -2.35
CPSF3Q9UKF6 uc_338.16-201ENST00000621804 95 ntBASIC0.4□□□□□ -2.35
CPSF3Q9UKF6 RNU6-508P-201ENST00000363231 103 ntBASIC0.39□□□□□ -2.35
CPSF3Q9UKF6 RNU6-682P-201ENST00000363843 106 ntBASIC0.39□□□□□ -2.35
CPSF3Q9UKF6 Y_RNA.476-201ENST00000384347 108 ntBASIC0.39□□□□□ -2.35
CPSF3Q9UKF6 Y_RNA.567-201ENST00000384736 106 ntBASIC0.39□□□□□ -2.35
CPSF3Q9UKF6 MIR644A-201ENST00000385262 94 ntBASIC0.39□□□□□ -2.35
CPSF3Q9UKF6 SNORA40.8-201ENST00000411034 126 ntBASIC0.39□□□□□ -2.35
CPSF3Q9UKF6 MTND5P34-201ENST00000568888 325 ntBASIC0.39□□□□□ -2.35
CPSF3Q9UKF6 MIR548AE2-201ENST00000583456 67 ntBASIC0.39□□□□□ -2.35
CPSF3Q9UKF6 DNAJC19P2-201ENST00000593340 302 ntBASIC0.39□□□□□ -2.35
CPSF3Q9UKF6 SNORA25.18-201ENST00000607153 114 ntBASIC0.39□□□□□ -2.35
CPSF3Q9UKF6 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.39□□□□□ -2.35
CPSF3Q9UKF6 SNORA36.1-201ENST00000363424 132 ntBASIC0.38□□□□□ -2.35
CPSF3Q9UKF6 VTRNA1-3-201ENST00000365645 89 ntBASIC0.38□□□□□ -2.35
CPSF3Q9UKF6 RNU6-291P-201ENST00000384720 107 ntBASIC0.38□□□□□ -2.35
CPSF3Q9UKF6 MIR518A1-201ENST00000385068 85 ntBASIC0.38□□□□□ -2.35
CPSF3Q9UKF6 MTATP6P21-201ENST00000440681 189 ntBASIC0.38□□□□□ -2.35
CPSF3Q9UKF6 Y_RNA.651-201ENST00000459380 103 ntBASIC0.38□□□□□ -2.35
CPSF3Q9UKF6 SNORA25.12-201ENST00000516202 82 ntBASIC0.38□□□□□ -2.35
CPSF3Q9UKF6 SNORA31.14-201ENST00000516728 116 ntBASIC0.38□□□□□ -2.35
CPSF3Q9UKF6 RNU6-1318P-201ENST00000365389 103 ntBASIC0.37□□□□□ -2.35
CPSF3Q9UKF6 Y_RNA.441-201ENST00000384123 112 ntBASIC0.37□□□□□ -2.35
CPSF3Q9UKF6 SNORA8.2-201ENST00000384372 139 ntBASIC0.37□□□□□ -2.35
CPSF3Q9UKF6 Y_RNA.531-201ENST00000384589 121 ntBASIC0.37□□□□□ -2.35
CPSF3Q9UKF6 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.37□□□□□ -2.35
CPSF3Q9UKF6 SNORD37.2-201ENST00000391075 66 ntBASIC0.37□□□□□ -2.35
CPSF3Q9UKF6 AC138907.4-201ENST00000570107 226 ntBASIC0.37□□□□□ -2.35
CPSF3Q9UKF6 AL359881.1-201ENST00000602916 267 ntBASIC0.37□□□□□ -2.35
CPSF3Q9UKF6 AC021443.1-201ENST00000604478 211 ntBASIC0.37□□□□□ -2.35
CPSF3Q9UKF6 Y_RNA.251-201ENST00000364551 99 ntBASIC0.36□□□□□ -2.35
CPSF3Q9UKF6 Y_RNA.536-201ENST00000384621 113 ntBASIC0.36□□□□□ -2.35
CPSF3Q9UKF6 snosnR66.1-201ENST00000391095 99 ntBASIC0.36□□□□□ -2.35
CPSF3Q9UKF6 MIR1270-201ENST00000459320 83 ntBASIC0.36□□□□□ -2.35
CPSF3Q9UKF6 RNU6-469P-201ENST00000516253 101 ntBASIC0.36□□□□□ -2.35
CPSF3Q9UKF6 RNU7-137P-201ENST00000516788 62 ntBASIC0.36□□□□□ -2.35
CPSF3Q9UKF6 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.36□□□□□ -2.35
CPSF3Q9UKF6 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.35□□□□□ -2.35
CPSF3Q9UKF6 MIR103A1-201ENST00000362165 78 ntBASIC0.35□□□□□ -2.35
CPSF3Q9UKF6 SNORD44.1-201ENST00000363202 61 ntBASIC0.35□□□□□ -2.35
CPSF3Q9UKF6 SNORD118-201ENST00000363593 134 ntBASIC0.35□□□□□ -2.35
CPSF3Q9UKF6 Y_RNA.366-201ENST00000365540 102 ntBASIC0.35□□□□□ -2.35
CPSF3Q9UKF6 Y_RNA.540-201ENST00000384638 111 ntBASIC0.35□□□□□ -2.35
CPSF3Q9UKF6 MIR216A-201ENST00000385063 110 ntBASIC0.35□□□□□ -2.35
CPSF3Q9UKF6 Y_RNA.584-201ENST00000391090 114 ntBASIC0.35□□□□□ -2.35
CPSF3Q9UKF6 SNORD71-201ENST00000411292 86 ntBASIC0.35□□□□□ -2.35
CPSF3Q9UKF6 Y_RNA.662-201ENST00000516028 97 ntBASIC0.35□□□□□ -2.35
CPSF3Q9UKF6 Y_RNA.686-201ENST00000516548 134 ntBASIC0.35□□□□□ -2.35
CPSF3Q9UKF6 SNORD67.1-201ENST00000516618 108 ntBASIC0.35□□□□□ -2.35
CPSF3Q9UKF6 RNU6-531P-201ENST00000516694 104 ntBASIC0.35□□□□□ -2.35
CPSF3Q9UKF6 Y_RNA.697-201ENST00000516776 113 ntBASIC0.35□□□□□ -2.35
CPSF3Q9UKF6 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.35□□□□□ -2.35
CPSF3Q9UKF6 Y_RNA.29-201ENST00000362570 113 ntBASIC0.34□□□□□ -2.36
CPSF3Q9UKF6 RNA5SP133-201ENST00000363368 119 ntBASIC0.34□□□□□ -2.36
CPSF3Q9UKF6 Y_RNA.174-201ENST00000363781 105 ntBASIC0.34□□□□□ -2.36
CPSF3Q9UKF6 RNU6-309P-201ENST00000364573 106 ntBASIC0.34□□□□□ -2.36
CPSF3Q9UKF6 RNU6-535P-201ENST00000384722 107 ntBASIC0.34□□□□□ -2.36
CPSF3Q9UKF6 RNU6-1135P-201ENST00000411083 103 ntBASIC0.34□□□□□ -2.36
CPSF3Q9UKF6 RNU7-164P-201ENST00000459221 62 ntBASIC0.34□□□□□ -2.36
CPSF3Q9UKF6 AC074198.2-201ENST00000508153 258 ntBASIC0.34□□□□□ -2.36
CPSF3Q9UKF6 RNU7-123P-201ENST00000515911 60 ntBASIC0.34□□□□□ -2.36
CPSF3Q9UKF6 Y_RNA.700-201ENST00000516806 100 ntBASIC0.34□□□□□ -2.36
CPSF3Q9UKF6 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.34□□□□□ -2.36
CPSF3Q9UKF6 U6.109-201ENST00000636749 87 ntBASIC0.34□□□□□ -2.36
CPSF3Q9UKF6 SNORD114-23-201ENST00000363536 72 ntBASIC0.33□□□□□ -2.36
CPSF3Q9UKF6 Y_RNA.272-201ENST00000364696 102 ntBASIC0.33□□□□□ -2.36
CPSF3Q9UKF6 RNA5SP134-201ENST00000516492 96 ntBASIC0.33□□□□□ -2.36
CPSF3Q9UKF6 SNORA81.3-201ENST00000517283 198 ntBASIC0.33□□□□□ -2.36
CPSF3Q9UKF6 AC138749.4-201ENST00000563970 127 ntBASIC0.33□□□□□ -2.36
CPSF3Q9UKF6 RN7SL793P-201ENST00000583259 296 ntBASIC0.33□□□□□ -2.36
CPSF3Q9UKF6 AC004792.1-201ENST00000614523 137 ntBASIC0.33□□□□□ -2.36
CPSF3Q9UKF6 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC0.32□□□□□ -2.36
CPSF3Q9UKF6 Y_RNA.257-201ENST00000364596 102 ntBASIC0.32□□□□□ -2.36
CPSF3Q9UKF6 RNU6-1327P-201ENST00000365302 105 ntBASIC0.32□□□□□ -2.36
CPSF3Q9UKF6 SNORD18B-201ENST00000365659 72 ntBASIC0.32□□□□□ -2.36
CPSF3Q9UKF6 Y_RNA.785-201ENST00000384290 109 ntBASIC0.32□□□□□ -2.36
CPSF3Q9UKF6 AL603914.1-201ENST00000401964 204 ntBASIC0.32□□□□□ -2.36
CPSF3Q9UKF6 RNU6-1194P-201ENST00000516208 104 ntBASIC0.32□□□□□ -2.36
CPSF3Q9UKF6 Y_RNA.690-201ENST00000516603 95 ntBASIC0.32□□□□□ -2.36
CPSF3Q9UKF6 DEFB131E-201ENST00000532329 154 ntBASIC0.32□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 168.8 ms