Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 RNU6-865P-201ENST00000364772 107 ntBASIC1.28□□□□□ -2.2
VSX1Q9NZR4 RNY1P2-201ENST00000364820 117 ntBASIC1.28□□□□□ -2.2
VSX1Q9NZR4 Y_RNA.328-201ENST00000365208 113 ntBASIC1.28□□□□□ -2.2
VSX1Q9NZR4 SNORA67.5-201ENST00000391036 107 ntBASIC1.28□□□□□ -2.2
VSX1Q9NZR4 SNORA75.2-201ENST00000391138 150 ntBASIC1.28□□□□□ -2.2
VSX1Q9NZR4 SNORA75.3-201ENST00000391231 150 ntBASIC1.28□□□□□ -2.2
VSX1Q9NZR4 AL354695.1-201ENST00000427935 228 ntBASIC1.28□□□□□ -2.2
VSX1Q9NZR4 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.28□□□□□ -2.2
VSX1Q9NZR4 Y_RNA.818-201ENST00000618813 71 ntBASIC1.28□□□□□ -2.2
VSX1Q9NZR4 AL512310.12-203ENST00000640543 90 ntBASIC1.28□□□□□ -2.2
VSX1Q9NZR4 Y_RNA.360-201ENST00000365512 102 ntBASIC1.27□□□□□ -2.21
VSX1Q9NZR4 RNU6-756P-201ENST00000383997 107 ntBASIC1.27□□□□□ -2.21
VSX1Q9NZR4 SNORA51.5-201ENST00000384126 131 ntBASIC1.27□□□□□ -2.21
VSX1Q9NZR4 Y_RNA.544-201ENST00000384650 113 ntBASIC1.27□□□□□ -2.21
VSX1Q9NZR4 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.27□□□□□ -2.21
VSX1Q9NZR4 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.27□□□□□ -2.21
VSX1Q9NZR4 RNU6-554P-201ENST00000410466 106 ntBASIC1.27□□□□□ -2.21
VSX1Q9NZR4 RNU7-48P-201ENST00000458875 63 ntBASIC1.27□□□□□ -2.21
VSX1Q9NZR4 DEFB131E-201ENST00000532329 154 ntBASIC1.27□□□□□ -2.21
VSX1Q9NZR4 AC141557.1-201ENST00000540982 400 ntBASIC1.27□□□□□ -2.21
VSX1Q9NZR4 AC104984.5-201ENST00000586878 94 ntBASIC1.27□□□□□ -2.21
VSX1Q9NZR4 MIR26B-201ENST00000362251 77 ntBASIC1.26□□□□□ -2.21
VSX1Q9NZR4 SNORA63.4-201ENST00000362763 126 ntBASIC1.26□□□□□ -2.21
VSX1Q9NZR4 Y_RNA.96-201ENST00000363092 109 ntBASIC1.26□□□□□ -2.21
VSX1Q9NZR4 Y_RNA.363-201ENST00000365529 113 ntBASIC1.26□□□□□ -2.21
VSX1Q9NZR4 SNORA25-201ENST00000384384 134 ntBASIC1.26□□□□□ -2.21
VSX1Q9NZR4 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.26□□□□□ -2.21
VSX1Q9NZR4 Y_RNA.601-201ENST00000410500 113 ntBASIC1.26□□□□□ -2.21
VSX1Q9NZR4 SNORA7.5-201ENST00000410672 110 ntBASIC1.26□□□□□ -2.21
VSX1Q9NZR4 snoU13.23-201ENST00000458863 104 ntBASIC1.26□□□□□ -2.21
VSX1Q9NZR4 RNA5SP61-201ENST00000516453 100 ntBASIC1.26□□□□□ -2.21
VSX1Q9NZR4 MIR4439-201ENST00000583746 80 ntBASIC1.26□□□□□ -2.21
VSX1Q9NZR4 uc_338.28-201ENST00000612082 187 ntBASIC1.26□□□□□ -2.21
VSX1Q9NZR4 AP001362.1-201ENST00000625165 124 ntBASIC1.26□□□□□ -2.21
VSX1Q9NZR4 RNU6-832P-201ENST00000363319 107 ntBASIC1.25□□□□□ -2.21
VSX1Q9NZR4 RNU6-1099P-201ENST00000363533 107 ntBASIC1.25□□□□□ -2.21
VSX1Q9NZR4 RNU6-32P-201ENST00000383948 107 ntBASIC1.25□□□□□ -2.21
VSX1Q9NZR4 RNU6-13P-201ENST00000384248 107 ntBASIC1.25□□□□□ -2.21
VSX1Q9NZR4 RNU6-12P-201ENST00000384604 107 ntBASIC1.25□□□□□ -2.21
VSX1Q9NZR4 RNU6-41P-201ENST00000384741 107 ntBASIC1.25□□□□□ -2.21
VSX1Q9NZR4 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
VSX1Q9NZR4 RNU6-679P-201ENST00000391003 106 ntBASIC1.25□□□□□ -2.21
VSX1Q9NZR4 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.25□□□□□ -2.21
VSX1Q9NZR4 RNU4-62P-201ENST00000410125 130 ntBASIC1.25□□□□□ -2.21
VSX1Q9NZR4 AC004941.2-201ENST00000427009 228 ntBASIC1.25□□□□□ -2.21
VSX1Q9NZR4 AC108729.3-201ENST00000513484 108 ntBASIC1.25□□□□□ -2.21
VSX1Q9NZR4 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.25□□□□□ -2.21
VSX1Q9NZR4 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC1.25□□□□□ -2.21
VSX1Q9NZR4 AL442128.1-201ENST00000615151 90 ntBASIC1.25□□□□□ -2.21
VSX1Q9NZR4 MIR2052-201ENST00000636055 55 ntBASIC1.25□□□□□ -2.21
VSX1Q9NZR4 SNORD38.1-201ENST00000363863 68 ntBASIC1.24□□□□□ -2.21
VSX1Q9NZR4 RNU6-934P-201ENST00000365154 107 ntBASIC1.24□□□□□ -2.21
VSX1Q9NZR4 RNU6-53P-201ENST00000365367 106 ntBASIC1.24□□□□□ -2.21
VSX1Q9NZR4 RNU6-147P-201ENST00000383983 107 ntBASIC1.24□□□□□ -2.21
VSX1Q9NZR4 Y_RNA.448-201ENST00000384185 108 ntBASIC1.24□□□□□ -2.21
VSX1Q9NZR4 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC1.24□□□□□ -2.21
VSX1Q9NZR4 AC108210.2-201ENST00000503681 201 ntBASIC1.24□□□□□ -2.21
VSX1Q9NZR4 RNU6-904P-201ENST00000516206 101 ntBASIC1.24□□□□□ -2.21
VSX1Q9NZR4 AC008163.1-202ENST00000636004 2889 ntBASIC1.24□□□□□ -2.21
VSX1Q9NZR4 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
VSX1Q9NZR4 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.23□□□□□ -2.21
VSX1Q9NZR4 SNORD45B-201ENST00000364617 72 ntBASIC1.23□□□□□ -2.21
VSX1Q9NZR4 RNU6-1201P-201ENST00000384227 107 ntBASIC1.23□□□□□ -2.21
VSX1Q9NZR4 MIR222-201ENST00000384992 110 ntBASIC1.23□□□□□ -2.21
VSX1Q9NZR4 MIR577-201ENST00000385196 96 ntBASIC1.23□□□□□ -2.21
VSX1Q9NZR4 RNU6-1321P-201ENST00000390905 107 ntBASIC1.23□□□□□ -2.21
VSX1Q9NZR4 U8.15-201ENST00000390947 134 ntBASIC1.23□□□□□ -2.21
VSX1Q9NZR4 RNA5SP95-201ENST00000410319 137 ntBASIC1.23□□□□□ -2.21
VSX1Q9NZR4 AC067940.1-201ENST00000458411 300 ntBASIC1.23□□□□□ -2.21
VSX1Q9NZR4 RNU6-1194P-201ENST00000516208 104 ntBASIC1.23□□□□□ -2.21
VSX1Q9NZR4 RNU6-158P-201ENST00000517104 100 ntBASIC1.23□□□□□ -2.21
VSX1Q9NZR4 AL353997.5-201ENST00000618886 171 ntBASIC1.23□□□□□ -2.21
VSX1Q9NZR4 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.23□□□□□ -2.21
VSX1Q9NZR4 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.23□□□□□ -2.21
VSX1Q9NZR4 MIR19B1-201ENST00000384829 87 ntBASIC1.22□□□□□ -2.21
VSX1Q9NZR4 MIR605-201ENST00000385078 83 ntBASIC1.22□□□□□ -2.21
VSX1Q9NZR4 MIR758-201ENST00000390227 88 ntBASIC1.22□□□□□ -2.21
VSX1Q9NZR4 MIR1257-201ENST00000408490 117 ntBASIC1.22□□□□□ -2.21
VSX1Q9NZR4 SNORD93-201ENST00000408813 74 ntBASIC1.22□□□□□ -2.21
VSX1Q9NZR4 RPS26P5-201ENST00000418544 335 ntBASIC1.22□□□□□ -2.21
VSX1Q9NZR4 AC108667.1-201ENST00000428618 249 ntBASIC1.22□□□□□ -2.21
VSX1Q9NZR4 RPS29P28-201ENST00000446439 141 ntBASIC1.22□□□□□ -2.21
VSX1Q9NZR4 RNU7-185P-201ENST00000459215 60 ntBASIC1.22□□□□□ -2.21
VSX1Q9NZR4 MIR3613-201ENST00000579844 87 ntBASIC1.22□□□□□ -2.21
VSX1Q9NZR4 AL136317.1-201ENST00000612653 226 ntBASIC1.22□□□□□ -2.21
VSX1Q9NZR4 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
VSX1Q9NZR4 Y_RNA.93-201ENST00000363066 109 ntBASIC1.21□□□□□ -2.22
VSX1Q9NZR4 RNU6-939P-201ENST00000384634 107 ntBASIC1.21□□□□□ -2.22
VSX1Q9NZR4 RNU6-994P-201ENST00000410507 111 ntBASIC1.21□□□□□ -2.22
VSX1Q9NZR4 AC096949.1-201ENST00000412047 152 ntBASIC1.21□□□□□ -2.22
VSX1Q9NZR4 FABP5P4-201ENST00000437203 171 ntBASIC1.21□□□□□ -2.22
VSX1Q9NZR4 AC002429.1-201ENST00000437672 148 ntBASIC1.21□□□□□ -2.22
VSX1Q9NZR4 SCARNA23-201ENST00000516060 130 ntBASIC1.21□□□□□ -2.22
VSX1Q9NZR4 MIR4524B-201ENST00000581569 115 ntBASIC1.21□□□□□ -2.22
VSX1Q9NZR4 AC105081.1-201ENST00000617727 106 ntBASIC1.21□□□□□ -2.22
VSX1Q9NZR4 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.2□□□□□ -2.22
VSX1Q9NZR4 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
VSX1Q9NZR4 RNA5SP327-201ENST00000362494 101 ntBASIC1.2□□□□□ -2.22
VSX1Q9NZR4 RNU1-36P-201ENST00000365130 165 ntBASIC1.2□□□□□ -2.22
VSX1Q9NZR4 MIR200A-201ENST00000384875 90 ntBASIC1.2□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 240.2 ms