Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 MIR1270-201ENST00000459320 83 ntBASIC-0.92□□□□□ -2.56
SCN3AQ9NY46 AC006504.6-201ENST00000590142 199 ntBASIC-0.92□□□□□ -2.56
SCN3AQ9NY46 AC037487.3-201ENST00000606668 112 ntBASIC-0.92□□□□□ -2.56
SCN3AQ9NY46 Y_RNA.44-201ENST00000362676 108 ntBASIC-0.93□□□□□ -2.56
SCN3AQ9NY46 SNORA22.1-201ENST00000362701 134 ntBASIC-0.93□□□□□ -2.56
SCN3AQ9NY46 MIR587-201ENST00000384845 96 ntBASIC-0.93□□□□□ -2.56
SCN3AQ9NY46 MIR519E-201ENST00000385075 84 ntBASIC-0.93□□□□□ -2.56
SCN3AQ9NY46 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC-0.93□□□□□ -2.56
SCN3AQ9NY46 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC-0.93□□□□□ -2.56
SCN3AQ9NY46 AP000676.1-201ENST00000533307 52 ntBASIC-0.93□□□□□ -2.56
SCN3AQ9NY46 Y_RNA.447-201ENST00000384184 113 ntBASIC-0.93□□□□□ -2.56
SCN3AQ9NY46 RNU6-1201P-201ENST00000384227 107 ntBASIC-0.93□□□□□ -2.56
SCN3AQ9NY46 Y_RNA.562-201ENST00000384695 113 ntBASIC-0.93□□□□□ -2.56
SCN3AQ9NY46 MIR599-201ENST00000385069 95 ntBASIC-0.93□□□□□ -2.56
SCN3AQ9NY46 Y_RNA.199-201ENST00000364014 102 ntBASIC-0.94□□□□□ -2.56
SCN3AQ9NY46 Y_RNA.214-201ENST00000364201 112 ntBASIC-0.94□□□□□ -2.56
SCN3AQ9NY46 Y_RNA.691-201ENST00000516611 103 ntBASIC-0.94□□□□□ -2.56
SCN3AQ9NY46 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC-0.94□□□□□ -2.56
SCN3AQ9NY46 MIR4320-201ENST00000636981 65 ntBASIC-0.94□□□□□ -2.56
SCN3AQ9NY46 UBE2WP1-201ENST00000362030 340 ntBASIC-0.94□□□□□ -2.56
SCN3AQ9NY46 Y_RNA.12-201ENST00000362393 112 ntBASIC-0.94□□□□□ -2.56
SCN3AQ9NY46 Y_RNA.119-201ENST00000363301 96 ntBASIC-0.94□□□□□ -2.56
SCN3AQ9NY46 Y_RNA.413-201ENST00000384007 102 ntBASIC-0.94□□□□□ -2.56
SCN3AQ9NY46 Y_RNA.785-201ENST00000384290 109 ntBASIC-0.94□□□□□ -2.56
SCN3AQ9NY46 RNU6-937P-201ENST00000384325 106 ntBASIC-0.94□□□□□ -2.56
SCN3AQ9NY46 Y_RNA.531-201ENST00000384589 121 ntBASIC-0.94□□□□□ -2.56
SCN3AQ9NY46 Y_RNA.754-201ENST00000476024 102 ntBASIC-0.94□□□□□ -2.56
SCN3AQ9NY46 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC-0.94□□□□□ -2.56
SCN3AQ9NY46 Y_RNA.790-201ENST00000614282 102 ntBASIC-0.94□□□□□ -2.56
SCN3AQ9NY46 Y_RNA.782-201ENST00000614695 102 ntBASIC-0.94□□□□□ -2.56
SCN3AQ9NY46 MIR367-201ENST00000362299 68 ntBASIC-0.95□□□□□ -2.56
SCN3AQ9NY46 SNORA63.7-201ENST00000365579 123 ntBASIC-0.95□□□□□ -2.56
SCN3AQ9NY46 Y_RNA.445-201ENST00000384168 102 ntBASIC-0.95□□□□□ -2.56
SCN3AQ9NY46 MIR216B-201ENST00000390186 82 ntBASIC-0.95□□□□□ -2.56
SCN3AQ9NY46 RNU6-191P-201ENST00000516295 94 ntBASIC-0.95□□□□□ -2.56
SCN3AQ9NY46 SNORD22.1-201ENST00000516331 125 ntBASIC-0.95□□□□□ -2.56
SCN3AQ9NY46 RNU6-1046P-201ENST00000516538 107 ntBASIC-0.95□□□□□ -2.56
SCN3AQ9NY46 RNU7-137P-201ENST00000516788 62 ntBASIC-0.95□□□□□ -2.56
SCN3AQ9NY46 SNORD115-2-201ENST00000362842 82 ntBASIC-0.96□□□□□ -2.56
SCN3AQ9NY46 Y_RNA.221-201ENST00000364248 96 ntBASIC-0.96□□□□□ -2.56
SCN3AQ9NY46 SNORD115-20-201ENST00000365099 82 ntBASIC-0.96□□□□□ -2.56
SCN3AQ9NY46 Y_RNA.452-201ENST00000384202 108 ntBASIC-0.96□□□□□ -2.56
SCN3AQ9NY46 Y_RNA.573-201ENST00000384763 105 ntBASIC-0.96□□□□□ -2.56
SCN3AQ9NY46 Y_RNA.581-201ENST00000391017 97 ntBASIC-0.96□□□□□ -2.56
SCN3AQ9NY46 RNU6-507P-201ENST00000516045 100 ntBASIC-0.96□□□□□ -2.56
SCN3AQ9NY46 MIR3179-1-201ENST00000578940 84 ntBASIC-0.96□□□□□ -2.56
SCN3AQ9NY46 MIR3179-2-201ENST00000579107 84 ntBASIC-0.96□□□□□ -2.56
SCN3AQ9NY46 MIR3179-3-201ENST00000579566 84 ntBASIC-0.96□□□□□ -2.56
SCN3AQ9NY46 AC021443.1-201ENST00000604478 211 ntBASIC-0.96□□□□□ -2.56
SCN3AQ9NY46 AC025253.1-201ENST00000613623 543 ntBASIC-0.96□□□□□ -2.56
SCN3AQ9NY46 MIR6854-201ENST00000614935 69 ntBASIC-0.96□□□□□ -2.56
SCN3AQ9NY46 MIR3179-4-201ENST00000617599 84 ntBASIC-0.96□□□□□ -2.56
SCN3AQ9NY46 MIR365A-201ENST00000362260 87 ntBASIC-0.96□□□□□ -2.56
SCN3AQ9NY46 RNU6-1272P-201ENST00000362776 107 ntBASIC-0.96□□□□□ -2.56
SCN3AQ9NY46 Y_RNA.166-201ENST00000363730 102 ntBASIC-0.96□□□□□ -2.56
SCN3AQ9NY46 RNU6-900P-201ENST00000384498 102 ntBASIC-0.96□□□□□ -2.56
SCN3AQ9NY46 AL606845.1-201ENST00000404881 255 ntBASIC-0.96□□□□□ -2.56
SCN3AQ9NY46 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.96□□□□□ -2.56
SCN3AQ9NY46 Y_RNA.688-201ENST00000516565 95 ntBASIC-0.96□□□□□ -2.56
SCN3AQ9NY46 Y_RNA.718-201ENST00000517110 102 ntBASIC-0.96□□□□□ -2.56
SCN3AQ9NY46 YWHAEP2-201ENST00000580066 112 ntBASIC-0.96□□□□□ -2.56
SCN3AQ9NY46 MTND5P18-201ENST00000445624 1801 ntBASIC-0.97□□□□□ -2.56
SCN3AQ9NY46 RNU6-154P-201ENST00000384306 106 ntBASIC-0.97□□□□□ -2.56
SCN3AQ9NY46 MIR624-201ENST00000385217 97 ntBASIC-0.97□□□□□ -2.56
SCN3AQ9NY46 MIR519A1-201ENST00000385257 85 ntBASIC-0.97□□□□□ -2.56
SCN3AQ9NY46 AF228730.3-201ENST00000436691 102 ntBASIC-0.97□□□□□ -2.56
SCN3AQ9NY46 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC-0.97□□□□□ -2.56
SCN3AQ9NY46 Y_RNA.171-201ENST00000363760 102 ntBASIC-0.98□□□□□ -2.57
SCN3AQ9NY46 Y_RNA.813-201ENST00000364639 102 ntBASIC-0.98□□□□□ -2.57
SCN3AQ9NY46 Y_RNA.463-201ENST00000384271 102 ntBASIC-0.98□□□□□ -2.57
SCN3AQ9NY46 Y_RNA.468-201ENST00000384298 102 ntBASIC-0.98□□□□□ -2.57
SCN3AQ9NY46 Y_RNA.542-201ENST00000384641 111 ntBASIC-0.98□□□□□ -2.57
SCN3AQ9NY46 Y_RNA.602-201ENST00000410535 92 ntBASIC-0.98□□□□□ -2.57
SCN3AQ9NY46 RNA5SP144-201ENST00000410846 116 ntBASIC-0.98□□□□□ -2.57
SCN3AQ9NY46 AC098614.3-201ENST00000438957 440 ntBASIC-0.98□□□□□ -2.57
SCN3AQ9NY46 RNU6-706P-201ENST00000517229 104 ntBASIC-0.98□□□□□ -2.57
SCN3AQ9NY46 Y_RNA.293-201ENST00000364908 93 ntBASIC-0.98□□□□□ -2.57
SCN3AQ9NY46 RNU6-1040P-201ENST00000383974 107 ntBASIC-0.98□□□□□ -2.57
SCN3AQ9NY46 RNU6-559P-201ENST00000516151 98 ntBASIC-0.98□□□□□ -2.57
SCN3AQ9NY46 RNU6-358P-201ENST00000516564 75 ntBASIC-0.98□□□□□ -2.57
SCN3AQ9NY46 SNORA49-201ENST00000386157 136 ntBASIC-0.99□□□□□ -2.57
SCN3AQ9NY46 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.99□□□□□ -2.57
SCN3AQ9NY46 Y_RNA.596-201ENST00000410462 109 ntBASIC-0.99□□□□□ -2.57
SCN3AQ9NY46 Y_RNA.639-201ENST00000458981 102 ntBASIC-0.99□□□□□ -2.57
SCN3AQ9NY46 AC069439.1-201ENST00000494739 167 ntBASIC-0.99□□□□□ -2.57
SCN3AQ9NY46 RNA5SP169-201ENST00000517268 117 ntBASIC-0.99□□□□□ -2.57
SCN3AQ9NY46 MIR4499-201ENST00000584834 69 ntBASIC-0.99□□□□□ -2.57
SCN3AQ9NY46 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC-0.99□□□□□ -2.57
SCN3AQ9NY46 RNU6-502P-201ENST00000362419 108 ntBASIC-0.99□□□□□ -2.57
SCN3AQ9NY46 SNORD113-8-201ENST00000363497 74 ntBASIC-0.99□□□□□ -2.57
SCN3AQ9NY46 SNORD114-25-201ENST00000363742 72 ntBASIC-0.99□□□□□ -2.57
SCN3AQ9NY46 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.99□□□□□ -2.57
SCN3AQ9NY46 RNY4P36-201ENST00000391116 96 ntBASIC-0.99□□□□□ -2.57
SCN3AQ9NY46 SNORD18.2-201ENST00000459604 70 ntBASIC-0.99□□□□□ -2.57
SCN3AQ9NY46 Y_RNA.661-201ENST00000516003 99 ntBASIC-0.99□□□□□ -2.57
SCN3AQ9NY46 RNU6-1299P-201ENST00000516316 100 ntBASIC-0.99□□□□□ -2.57
SCN3AQ9NY46 AC103591.3-201ENST00000608684 209 ntBASIC-0.99□□□□□ -2.57
SCN3AQ9NY46 Y_RNA.65-201ENST00000362846 100 ntBASIC-1□□□□□ -2.57
SCN3AQ9NY46 Y_RNA.176-201ENST00000363815 109 ntBASIC-1□□□□□ -2.57
SCN3AQ9NY46 Y_RNA.288-201ENST00000364854 92 ntBASIC-1□□□□□ -2.57
Retrieved 100 of 98,524 protein–RNA pairs in 206.2 ms