Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 Y_RNA.170-201ENST00000363746 110 ntBASIC0.56□□□□□ -2.32
CCDC28BQ9BUN5 Y_RNA.366-201ENST00000365540 102 ntBASIC0.56□□□□□ -2.32
CCDC28BQ9BUN5 Y_RNA.420-201ENST00000384043 110 ntBASIC0.56□□□□□ -2.32
CCDC28BQ9BUN5 Y_RNA.488-201ENST00000384403 102 ntBASIC0.56□□□□□ -2.32
CCDC28BQ9BUN5 MIR605-201ENST00000385078 83 ntBASIC0.56□□□□□ -2.32
CCDC28BQ9BUN5 RNU7-123P-201ENST00000515911 60 ntBASIC0.56□□□□□ -2.32
CCDC28BQ9BUN5 U7.2-201ENST00000607576 63 ntBASIC0.56□□□□□ -2.32
CCDC28BQ9BUN5 RNU6-647P-201ENST00000364243 107 ntBASIC0.55□□□□□ -2.32
CCDC28BQ9BUN5 SNORD114-22-201ENST00000365423 72 ntBASIC0.55□□□□□ -2.32
CCDC28BQ9BUN5 SNORD100-201ENST00000408573 76 ntBASIC0.55□□□□□ -2.32
CCDC28BQ9BUN5 RNU4-69P-201ENST00000410677 143 ntBASIC0.55□□□□□ -2.32
CCDC28BQ9BUN5 RNU4-83P-201ENST00000410863 133 ntBASIC0.55□□□□□ -2.32
CCDC28BQ9BUN5 RNU6-765P-201ENST00000516916 99 ntBASIC0.55□□□□□ -2.32
CCDC28BQ9BUN5 AP003327.1-201ENST00000529684 127 ntBASIC0.55□□□□□ -2.32
CCDC28BQ9BUN5 MIR548AE2-201ENST00000583456 67 ntBASIC0.55□□□□□ -2.32
CCDC28BQ9BUN5 AC108081.1-201ENST00000604358 221 ntBASIC0.55□□□□□ -2.32
CCDC28BQ9BUN5 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.55□□□□□ -2.32
CCDC28BQ9BUN5 Y_RNA.42-201ENST00000362660 108 ntBASIC0.54□□□□□ -2.32
CCDC28BQ9BUN5 RNU6-209P-201ENST00000384118 107 ntBASIC0.54□□□□□ -2.32
CCDC28BQ9BUN5 Y_RNA.588-201ENST00000391254 102 ntBASIC0.54□□□□□ -2.32
CCDC28BQ9BUN5 AC096949.1-201ENST00000412047 152 ntBASIC0.54□□□□□ -2.32
CCDC28BQ9BUN5 COX6CP6-201ENST00000490840 228 ntBASIC0.54□□□□□ -2.32
CCDC28BQ9BUN5 RNA5SP220-201ENST00000516298 104 ntBASIC0.54□□□□□ -2.32
CCDC28BQ9BUN5 MIR4491-201ENST00000581087 68 ntBASIC0.54□□□□□ -2.32
CCDC28BQ9BUN5 MIR8066-201ENST00000617280 78 ntBASIC0.54□□□□□ -2.32
CCDC28BQ9BUN5 MIR96-201ENST00000362288 78 ntBASIC0.53□□□□□ -2.32
CCDC28BQ9BUN5 Y_RNA.114-201ENST00000363265 113 ntBASIC0.53□□□□□ -2.32
CCDC28BQ9BUN5 SNORD114-10-201ENST00000363409 72 ntBASIC0.53□□□□□ -2.32
CCDC28BQ9BUN5 RNU1-93P-201ENST00000364704 169 ntBASIC0.53□□□□□ -2.32
CCDC28BQ9BUN5 Y_RNA.280-201ENST00000364765 112 ntBASIC0.53□□□□□ -2.32
CCDC28BQ9BUN5 Y_RNA.343-201ENST00000365354 112 ntBASIC0.53□□□□□ -2.32
CCDC28BQ9BUN5 MIR508-201ENST00000384857 115 ntBASIC0.53□□□□□ -2.32
CCDC28BQ9BUN5 RNU5E-3P-201ENST00000515913 68 ntBASIC0.53□□□□□ -2.32
CCDC28BQ9BUN5 RNY4P20-201ENST00000516678 93 ntBASIC0.53□□□□□ -2.32
CCDC28BQ9BUN5 RNU6-448P-201ENST00000517052 107 ntBASIC0.53□□□□□ -2.32
CCDC28BQ9BUN5 MIR3612-201ENST00000579753 87 ntBASIC0.53□□□□□ -2.32
CCDC28BQ9BUN5 AC008608.1-201ENST00000603910 127 ntBASIC0.53□□□□□ -2.32
CCDC28BQ9BUN5 MIR6082-201ENST00000613604 109 ntBASIC0.53□□□□□ -2.32
CCDC28BQ9BUN5 MIR6734-201ENST00000621166 68 ntBASIC0.53□□□□□ -2.32
CCDC28BQ9BUN5 SNORA32-201ENST00000384072 121 ntBASIC0.52□□□□□ -2.33
CCDC28BQ9BUN5 MIR520E-201ENST00000384867 87 ntBASIC0.52□□□□□ -2.33
CCDC28BQ9BUN5 MIR518E-201ENST00000385252 88 ntBASIC0.52□□□□□ -2.33
CCDC28BQ9BUN5 SNORD77B-201ENST00000391112 67 ntBASIC0.52□□□□□ -2.33
CCDC28BQ9BUN5 RNA5SP222-201ENST00000411039 105 ntBASIC0.52□□□□□ -2.33
CCDC28BQ9BUN5 RPS29P1-201ENST00000465274 159 ntBASIC0.52□□□□□ -2.33
CCDC28BQ9BUN5 AC002350.1-201ENST00000490759 375 ntBASIC0.52□□□□□ -2.33
CCDC28BQ9BUN5 RNU6-1194P-201ENST00000516208 104 ntBASIC0.52□□□□□ -2.33
CCDC28BQ9BUN5 RNU6-255P-201ENST00000516957 105 ntBASIC0.52□□□□□ -2.33
CCDC28BQ9BUN5 TUG1_4.1-201ENST00000619464 181 ntBASIC0.52□□□□□ -2.33
CCDC28BQ9BUN5 MIR18A-201ENST00000362310 71 ntBASIC0.51□□□□□ -2.33
CCDC28BQ9BUN5 RNU6-403P-201ENST00000363163 104 ntBASIC0.51□□□□□ -2.33
CCDC28BQ9BUN5 Y_RNA.116-201ENST00000363292 103 ntBASIC0.51□□□□□ -2.33
CCDC28BQ9BUN5 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.51□□□□□ -2.33
CCDC28BQ9BUN5 RNU6-42P-201ENST00000384165 107 ntBASIC0.51□□□□□ -2.33
CCDC28BQ9BUN5 Y_RNA.506-201ENST00000384494 102 ntBASIC0.51□□□□□ -2.33
CCDC28BQ9BUN5 RNA5SP136-201ENST00000410906 107 ntBASIC0.51□□□□□ -2.33
CCDC28BQ9BUN5 AL157398.1-201ENST00000452981 186 ntBASIC0.51□□□□□ -2.33
CCDC28BQ9BUN5 RN7SKP19-201ENST00000516016 252 ntBASIC0.51□□□□□ -2.33
CCDC28BQ9BUN5 RNU7-137P-201ENST00000516788 62 ntBASIC0.51□□□□□ -2.33
CCDC28BQ9BUN5 MIR151B-201ENST00000584249 96 ntBASIC0.51□□□□□ -2.33
CCDC28BQ9BUN5 Y_RNA.13-201ENST00000362403 112 ntBASIC0.5□□□□□ -2.33
CCDC28BQ9BUN5 RNA5SP117-201ENST00000365294 118 ntBASIC0.5□□□□□ -2.33
CCDC28BQ9BUN5 Y_RNA.568-201ENST00000384742 113 ntBASIC0.5□□□□□ -2.33
CCDC28BQ9BUN5 AL158147.1-201ENST00000443970 75 ntBASIC0.5□□□□□ -2.33
CCDC28BQ9BUN5 RNU6-426P-201ENST00000516464 97 ntBASIC0.5□□□□□ -2.33
CCDC28BQ9BUN5 SNORD67.1-201ENST00000516618 108 ntBASIC0.5□□□□□ -2.33
CCDC28BQ9BUN5 AC133485.1-201ENST00000567176 124 ntBASIC0.5□□□□□ -2.33
CCDC28BQ9BUN5 AC138907.6-201ENST00000568401 126 ntBASIC0.5□□□□□ -2.33
CCDC28BQ9BUN5 AL589743.1-201ENST00000551932 2712 ntBASIC0.5□□□□□ -2.33
CCDC28BQ9BUN5 SNORA40-201ENST00000388090 126 ntBASIC0.49□□□□□ -2.33
CCDC28BQ9BUN5 Y_RNA.617-201ENST00000410920 90 ntBASIC0.49□□□□□ -2.33
CCDC28BQ9BUN5 MIR1270-201ENST00000459320 83 ntBASIC0.49□□□□□ -2.33
CCDC28BQ9BUN5 IGKV1-22-201ENST00000524313 326 ntBASIC0.49□□□□□ -2.33
CCDC28BQ9BUN5 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.49□□□□□ -2.33
CCDC28BQ9BUN5 MIR6788-201ENST00000618842 66 ntBASIC0.49□□□□□ -2.33
CCDC28BQ9BUN5 RNU4-58P-201ENST00000363192 141 ntBASIC0.48□□□□□ -2.33
CCDC28BQ9BUN5 Y_RNA.174-201ENST00000363781 105 ntBASIC0.48□□□□□ -2.33
CCDC28BQ9BUN5 Y_RNA.198-201ENST00000364013 98 ntBASIC0.48□□□□□ -2.33
CCDC28BQ9BUN5 MIR140-201ENST00000385282 100 ntBASIC0.48□□□□□ -2.33
CCDC28BQ9BUN5 MIR759-201ENST00000390224 91 ntBASIC0.48□□□□□ -2.33
CCDC28BQ9BUN5 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.48□□□□□ -2.33
CCDC28BQ9BUN5 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.48□□□□□ -2.33
CCDC28BQ9BUN5 RNU4-54P-201ENST00000516428 129 ntBASIC0.48□□□□□ -2.33
CCDC28BQ9BUN5 RNA5SP121-201ENST00000516537 101 ntBASIC0.48□□□□□ -2.33
CCDC28BQ9BUN5 AC018659.1-201ENST00000551083 169 ntBASIC0.48□□□□□ -2.33
CCDC28BQ9BUN5 Y_RNA.213-201ENST00000364178 111 ntBASIC0.47□□□□□ -2.33
CCDC28BQ9BUN5 RNY1P2-201ENST00000364820 117 ntBASIC0.47□□□□□ -2.33
CCDC28BQ9BUN5 SNORA36.2-201ENST00000384004 127 ntBASIC0.47□□□□□ -2.33
CCDC28BQ9BUN5 SNORA72.6-201ENST00000384520 129 ntBASIC0.47□□□□□ -2.33
CCDC28BQ9BUN5 RNU6-1104P-201ENST00000384723 104 ntBASIC0.47□□□□□ -2.33
CCDC28BQ9BUN5 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.47□□□□□ -2.33
CCDC28BQ9BUN5 MIR548J-201ENST00000408833 112 ntBASIC0.47□□□□□ -2.33
CCDC28BQ9BUN5 MTND4LP9-201ENST00000427694 174 ntBASIC0.47□□□□□ -2.33
CCDC28BQ9BUN5 SNORA25.16-201ENST00000516741 121 ntBASIC0.47□□□□□ -2.33
CCDC28BQ9BUN5 RNU6-135P-201ENST00000516769 101 ntBASIC0.47□□□□□ -2.33
CCDC28BQ9BUN5 RNU6-1223P-201ENST00000517124 104 ntBASIC0.47□□□□□ -2.33
CCDC28BQ9BUN5 AC022523.2-201ENST00000561045 150 ntBASIC0.47□□□□□ -2.33
CCDC28BQ9BUN5 CYP3A137P-201ENST00000562436 69 ntBASIC0.47□□□□□ -2.33
CCDC28BQ9BUN5 MIR3163-201ENST00000581592 73 ntBASIC0.47□□□□□ -2.33
CCDC28BQ9BUN5 AL359881.1-201ENST00000602916 267 ntBASIC0.47□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 170.9 ms