Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 MIR2113-201ENST00000459007 91 ntBASIC-1.79□□□□□ -2.7
CCDC42Q96M95 Y_RNA.635-201ENST00000459041 101 ntBASIC-1.79□□□□□ -2.7
CCDC42Q96M95 AC022137.1-201ENST00000483735 151 ntBASIC-1.79□□□□□ -2.7
CCDC42Q96M95 MIR548AE2-201ENST00000583456 67 ntBASIC-1.79□□□□□ -2.7
CCDC42Q96M95 Y_RNA.86-201ENST00000363020 111 ntBASIC-1.8□□□□□ -2.7
CCDC42Q96M95 RNU6-973P-201ENST00000364690 107 ntBASIC-1.8□□□□□ -2.7
CCDC42Q96M95 RNU6-24P-201ENST00000384440 107 ntBASIC-1.8□□□□□ -2.7
CCDC42Q96M95 Y_RNA.518-201ENST00000384552 113 ntBASIC-1.8□□□□□ -2.7
CCDC42Q96M95 SNORA49-201ENST00000386157 136 ntBASIC-1.8□□□□□ -2.7
CCDC42Q96M95 AL731563.1-201ENST00000442202 214 ntBASIC-1.8□□□□□ -2.7
CCDC42Q96M95 snoU13.19-201ENST00000459148 104 ntBASIC-1.8□□□□□ -2.7
CCDC42Q96M95 Y_RNA.189-201ENST00000363959 112 ntBASIC-1.81□□□□□ -2.7
CCDC42Q96M95 RNU6-10P-201ENST00000384036 107 ntBASIC-1.81□□□□□ -2.7
CCDC42Q96M95 RNY1P6-201ENST00000384193 109 ntBASIC-1.81□□□□□ -2.7
CCDC42Q96M95 Y_RNA.568-201ENST00000384742 113 ntBASIC-1.81□□□□□ -2.7
CCDC42Q96M95 Y_RNA.569-201ENST00000384749 103 ntBASIC-1.81□□□□□ -2.7
CCDC42Q96M95 MIR517B-201ENST00000385102 67 ntBASIC-1.81□□□□□ -2.7
CCDC42Q96M95 MIR652-201ENST00000385278 98 ntBASIC-1.81□□□□□ -2.7
CCDC42Q96M95 AC016907.1-201ENST00000419483 435 ntBASIC-1.81□□□□□ -2.7
CCDC42Q96M95 MIR378F-201ENST00000578143 78 ntBASIC-1.81□□□□□ -2.7
CCDC42Q96M95 SNORA51.5-201ENST00000384126 131 ntBASIC-1.82□□□□□ -2.7
CCDC42Q96M95 HSPE1P25-201ENST00000455484 251 ntBASIC-1.82□□□□□ -2.7
CCDC42Q96M95 RNU7-48P-201ENST00000458875 63 ntBASIC-1.82□□□□□ -2.7
CCDC42Q96M95 RNA5SP470-201ENST00000516463 106 ntBASIC-1.82□□□□□ -2.7
CCDC42Q96M95 RNU6-699P-201ENST00000517081 110 ntBASIC-1.82□□□□□ -2.7
CCDC42Q96M95 AC007012.1-201ENST00000567192 175 ntBASIC-1.82□□□□□ -2.7
CCDC42Q96M95 Y_RNA.12-201ENST00000362393 112 ntBASIC-1.83□□□□□ -2.7
CCDC42Q96M95 SNORD113-8-201ENST00000363497 74 ntBASIC-1.83□□□□□ -2.7
CCDC42Q96M95 SNORD74.6-201ENST00000364796 70 ntBASIC-1.83□□□□□ -2.7
CCDC42Q96M95 Y_RNA.785-201ENST00000384290 109 ntBASIC-1.83□□□□□ -2.7
CCDC42Q96M95 Y_RNA.526-201ENST00000384572 110 ntBASIC-1.83□□□□□ -2.7
CCDC42Q96M95 MIR587-201ENST00000384845 96 ntBASIC-1.83□□□□□ -2.7
CCDC42Q96M95 Y_RNA.98-201ENST00000363109 102 ntBASIC-1.84□□□□□ -2.7
CCDC42Q96M95 Y_RNA.554-201ENST00000384672 102 ntBASIC-1.84□□□□□ -2.7
CCDC42Q96M95 MT-TT-201ENST00000387460 66 ntBASIC-1.84□□□□□ -2.7
CCDC42Q96M95 AP000533.3-201ENST00000447704 118 ntBASIC-1.84□□□□□ -2.7
CCDC42Q96M95 AL138825.1-201ENST00000618587 192 ntBASIC-1.84□□□□□ -2.7
CCDC42Q96M95 Y_RNA.41-201ENST00000362646 102 ntBASIC-1.85□□□□□ -2.71
CCDC42Q96M95 Y_RNA.199-201ENST00000364014 102 ntBASIC-1.85□□□□□ -2.71
CCDC42Q96M95 RNU6-30P-201ENST00000384561 107 ntBASIC-1.85□□□□□ -2.71
CCDC42Q96M95 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC-1.85□□□□□ -2.71
CCDC42Q96M95 SNORD2-201ENST00000459163 69 ntBASIC-1.85□□□□□ -2.71
CCDC42Q96M95 snoU13.11-201ENST00000459219 104 ntBASIC-1.85□□□□□ -2.71
CCDC42Q96M95 RNU7-106P-201ENST00000459514 67 ntBASIC-1.85□□□□□ -2.71
CCDC42Q96M95 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC-1.85□□□□□ -2.71
CCDC42Q96M95 Y_RNA.220-201ENST00000364244 109 ntBASIC-1.86□□□□□ -2.71
CCDC42Q96M95 RNU6-102P-201ENST00000384485 104 ntBASIC-1.86□□□□□ -2.71
CCDC42Q96M95 RNU6-1250P-201ENST00000391218 107 ntBASIC-1.86□□□□□ -2.71
CCDC42Q96M95 MTND4LP30-201ENST00000454092 297 ntBASIC-1.86□□□□□ -2.71
CCDC42Q96M95 Y_RNA.639-201ENST00000458981 102 ntBASIC-1.86□□□□□ -2.71
CCDC42Q96M95 MTND4P17-201ENST00000470444 350 ntBASIC-1.86□□□□□ -2.71
CCDC42Q96M95 RN7SKP19-201ENST00000516016 252 ntBASIC-1.86□□□□□ -2.71
CCDC42Q96M95 RNU6-287P-201ENST00000516230 98 ntBASIC-1.86□□□□□ -2.71
CCDC42Q96M95 SNORA40.14-201ENST00000516543 86 ntBASIC-1.86□□□□□ -2.71
CCDC42Q96M95 RNU6-1149P-201ENST00000516810 97 ntBASIC-1.86□□□□□ -2.71
CCDC42Q96M95 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC-1.86□□□□□ -2.71
CCDC42Q96M95 AC140658.3-201ENST00000567603 271 ntBASIC-1.86□□□□□ -2.71
CCDC42Q96M95 MIR3165-201ENST00000579874 75 ntBASIC-1.86□□□□□ -2.71
CCDC42Q96M95 AP001362.1-201ENST00000625165 124 ntBASIC-1.86□□□□□ -2.71
CCDC42Q96M95 RNU4-90P-201ENST00000362773 141 ntBASIC-1.87□□□□□ -2.71
CCDC42Q96M95 Y_RNA.217-201ENST00000364214 105 ntBASIC-1.87□□□□□ -2.71
CCDC42Q96M95 Y_RNA.303-201ENST00000364998 94 ntBASIC-1.87□□□□□ -2.71
CCDC42Q96M95 RNU6-571P-201ENST00000384128 107 ntBASIC-1.87□□□□□ -2.71
CCDC42Q96M95 AL606845.1-201ENST00000404881 255 ntBASIC-1.87□□□□□ -2.71
CCDC42Q96M95 RNU6-130P-201ENST00000411112 103 ntBASIC-1.87□□□□□ -2.71
CCDC42Q96M95 Y_RNA.653-201ENST00000459091 95 ntBASIC-1.87□□□□□ -2.71
CCDC42Q96M95 Y_RNA.641-201ENST00000459414 105 ntBASIC-1.87□□□□□ -2.71
CCDC42Q96M95 AC082651.2-201ENST00000496833 166 ntBASIC-1.87□□□□□ -2.71
CCDC42Q96M95 Y_RNA.691-201ENST00000516611 103 ntBASIC-1.87□□□□□ -2.71
CCDC42Q96M95 RNU7-30P-201ENST00000516835 62 ntBASIC-1.87□□□□□ -2.71
CCDC42Q96M95 AC245505.1-201ENST00000556398 224 ntBASIC-1.87□□□□□ -2.71
CCDC42Q96M95 snoU18.1-201ENST00000629629 71 ntBASIC-1.87□□□□□ -2.71
CCDC42Q96M95 Y_RNA.428-201ENST00000384078 102 ntBASIC-1.88□□□□□ -2.71
CCDC42Q96M95 Y_RNA.448-201ENST00000384185 108 ntBASIC-1.88□□□□□ -2.71
CCDC42Q96M95 Y_RNA.531-201ENST00000384589 121 ntBASIC-1.88□□□□□ -2.71
CCDC42Q96M95 SNORD116.3-201ENST00000517176 78 ntBASIC-1.88□□□□□ -2.71
CCDC42Q96M95 MIR5704-201ENST00000584029 77 ntBASIC-1.88□□□□□ -2.71
CCDC42Q96M95 PART1_1.1-201ENST00000611761 217 ntBASIC-1.88□□□□□ -2.71
CCDC42Q96M95 MIR6854-201ENST00000614935 69 ntBASIC-1.88□□□□□ -2.71
CCDC42Q96M95 Y_RNA.453-201ENST00000384223 109 ntBASIC-1.89□□□□□ -2.71
CCDC42Q96M95 RNU6-662P-201ENST00000384253 104 ntBASIC-1.89□□□□□ -2.71
CCDC42Q96M95 MIR206-201ENST00000384872 86 ntBASIC-1.89□□□□□ -2.71
CCDC42Q96M95 MIR1270-201ENST00000459320 83 ntBASIC-1.89□□□□□ -2.71
CCDC42Q96M95 MIR4760-201ENST00000585040 80 ntBASIC-1.89□□□□□ -2.71
CCDC42Q96M95 Y_RNA.127-201ENST00000363386 109 ntBASIC-1.9□□□□□ -2.71
CCDC42Q96M95 Y_RNA.152-201ENST00000363578 100 ntBASIC-1.9□□□□□ -2.71
CCDC42Q96M95 Y_RNA.602-201ENST00000410535 92 ntBASIC-1.9□□□□□ -2.71
CCDC42Q96M95 Y_RNA.215-201ENST00000364204 112 ntBASIC-1.91□□□□□ -2.72
CCDC42Q96M95 RNA5SP192-201ENST00000364404 120 ntBASIC-1.91□□□□□ -2.72
CCDC42Q96M95 SNORD115-35-201ENST00000365122 82 ntBASIC-1.91□□□□□ -2.72
CCDC42Q96M95 SNORA20.3-201ENST00000516880 132 ntBASIC-1.91□□□□□ -2.72
CCDC42Q96M95 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC-1.91□□□□□ -2.72
CCDC42Q96M95 U4.1-201ENST00000620349 87 ntBASIC-1.91□□□□□ -2.72
CCDC42Q96M95 MIR3688-2-201ENST00000636963 87 ntBASIC-1.91□□□□□ -2.72
CCDC42Q96M95 Y_RNA.51-201ENST00000362725 102 ntBASIC-1.92□□□□□ -2.72
CCDC42Q96M95 SNORA79-201ENST00000408376 140 ntBASIC-1.92□□□□□ -2.72
CCDC42Q96M95 SCARNA17.3-201ENST00000516381 125 ntBASIC-1.92□□□□□ -2.72
CCDC42Q96M95 RNU6-1046P-201ENST00000516538 107 ntBASIC-1.92□□□□□ -2.72
CCDC42Q96M95 Y_RNA.39-201ENST00000362620 98 ntBASIC-1.93□□□□□ -2.72
CCDC42Q96M95 Y_RNA.176-201ENST00000363815 109 ntBASIC-1.93□□□□□ -2.72
Retrieved 100 of 98,524 protein–RNA pairs in 238.4 ms