Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 RNA5SP144-201ENST00000410846 116 ntBASIC0.74□□□□□ -2.29
CTCFP49711 RNU6-1135P-201ENST00000411083 103 ntBASIC0.74□□□□□ -2.29
CTCFP49711 RNU6-893P-201ENST00000458841 100 ntBASIC0.74□□□□□ -2.29
CTCFP49711 AC074198.2-201ENST00000508153 258 ntBASIC0.74□□□□□ -2.29
CTCFP49711 AC023932.2-201ENST00000603176 175 ntBASIC0.74□□□□□ -2.29
CTCFP49711 Y_RNA.171-201ENST00000363760 102 ntBASIC0.73□□□□□ -2.29
CTCFP49711 RNA5SP499-201ENST00000363982 119 ntBASIC0.73□□□□□ -2.29
CTCFP49711 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.73□□□□□ -2.29
CTCFP49711 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.73□□□□□ -2.29
CTCFP49711 MTND5P15-201ENST00000434246 349 ntBASIC0.73□□□□□ -2.29
CTCFP49711 AC141846.1-201ENST00000568348 142 ntBASIC0.73□□□□□ -2.29
CTCFP49711 AC008608.1-201ENST00000603910 127 ntBASIC0.73□□□□□ -2.29
CTCFP49711 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.72□□□□□ -2.29
CTCFP49711 RNU6-30P-201ENST00000384561 107 ntBASIC0.72□□□□□ -2.29
CTCFP49711 RNU7-156P-201ENST00000517214 74 ntBASIC0.72□□□□□ -2.29
CTCFP49711 SNORD92-201ENST00000585078 85 ntBASIC0.72□□□□□ -2.29
CTCFP49711 Y_RNA.272-201ENST00000364696 102 ntBASIC0.71□□□□□ -2.3
CTCFP49711 SNORA18-201ENST00000384416 132 ntBASIC0.71□□□□□ -2.3
CTCFP49711 RNU7-102P-201ENST00000458948 62 ntBASIC0.71□□□□□ -2.3
CTCFP49711 RNU6-364P-201ENST00000384387 107 ntBASIC0.7□□□□□ -2.3
CTCFP49711 U8.15-201ENST00000390947 134 ntBASIC0.7□□□□□ -2.3
CTCFP49711 SNORD37.2-201ENST00000391075 66 ntBASIC0.7□□□□□ -2.3
CTCFP49711 RNU6-733P-201ENST00000410759 104 ntBASIC0.7□□□□□ -2.3
CTCFP49711 RNA5SP222-201ENST00000411039 105 ntBASIC0.7□□□□□ -2.3
CTCFP49711 AC096949.1-201ENST00000412047 152 ntBASIC0.7□□□□□ -2.3
CTCFP49711 AC090897.1-201ENST00000580909 226 ntBASIC0.7□□□□□ -2.3
CTCFP49711 AC011603.4-201ENST00000611325 277 ntBASIC0.7□□□□□ -2.3
CTCFP49711 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.7□□□□□ -2.3
CTCFP49711 RNU6-690P-201ENST00000365242 106 ntBASIC0.69□□□□□ -2.3
CTCFP49711 RNY1P8-201ENST00000383970 114 ntBASIC0.69□□□□□ -2.3
CTCFP49711 Y_RNA.470-201ENST00000384307 117 ntBASIC0.69□□□□□ -2.3
CTCFP49711 SNORD93-201ENST00000408813 74 ntBASIC0.69□□□□□ -2.3
CTCFP49711 RNU6-447P-201ENST00000410293 104 ntBASIC0.69□□□□□ -2.3
CTCFP49711 RNU6-1118P-201ENST00000410382 104 ntBASIC0.69□□□□□ -2.3
CTCFP49711 RNU6-1076P-201ENST00000410397 104 ntBASIC0.69□□□□□ -2.3
CTCFP49711 RNU6-355P-201ENST00000410427 104 ntBASIC0.69□□□□□ -2.3
CTCFP49711 RNU6-791P-201ENST00000410467 104 ntBASIC0.69□□□□□ -2.3
CTCFP49711 RNU6-705P-201ENST00000410601 104 ntBASIC0.69□□□□□ -2.3
CTCFP49711 RNU6-1100P-201ENST00000410691 104 ntBASIC0.69□□□□□ -2.3
CTCFP49711 RNU6-860P-201ENST00000410860 104 ntBASIC0.69□□□□□ -2.3
CTCFP49711 RNU6-1217P-201ENST00000411276 104 ntBASIC0.69□□□□□ -2.3
CTCFP49711 RNU6-785P-201ENST00000411324 104 ntBASIC0.69□□□□□ -2.3
CTCFP49711 MTATP6P21-201ENST00000440681 189 ntBASIC0.69□□□□□ -2.3
CTCFP49711 AC018659.1-201ENST00000551083 169 ntBASIC0.69□□□□□ -2.3
CTCFP49711 MIR3612-201ENST00000579753 87 ntBASIC0.69□□□□□ -2.3
CTCFP49711 U6.90-201ENST00000614007 104 ntBASIC0.69□□□□□ -2.3
CTCFP49711 MIR8066-201ENST00000617280 78 ntBASIC0.69□□□□□ -2.3
CTCFP49711 U6.70-201ENST00000620287 104 ntBASIC0.69□□□□□ -2.3
CTCFP49711 RNU6-949P-201ENST00000384040 107 ntBASIC0.68□□□□□ -2.3
CTCFP49711 SNORD115-2-201ENST00000362842 82 ntBASIC0.67□□□□□ -2.3
CTCFP49711 RNU6-508P-201ENST00000363231 103 ntBASIC0.67□□□□□ -2.3
CTCFP49711 Y_RNA.120-201ENST00000363304 110 ntBASIC0.67□□□□□ -2.3
CTCFP49711 RNY1P13-201ENST00000365030 105 ntBASIC0.67□□□□□ -2.3
CTCFP49711 SNORD115-20-201ENST00000365099 82 ntBASIC0.67□□□□□ -2.3
CTCFP49711 Y_RNA.584-201ENST00000391090 114 ntBASIC0.67□□□□□ -2.3
CTCFP49711 SNORD100-201ENST00000408573 76 ntBASIC0.67□□□□□ -2.3
CTCFP49711 RNA5SP25-201ENST00000410815 110 ntBASIC0.67□□□□□ -2.3
CTCFP49711 RNU4-83P-201ENST00000410863 133 ntBASIC0.67□□□□□ -2.3
CTCFP49711 RNU6-1086P-201ENST00000410930 100 ntBASIC0.67□□□□□ -2.3
CTCFP49711 AL022718.1-201ENST00000412004 84 ntBASIC0.67□□□□□ -2.3
CTCFP49711 RNU7-113P-201ENST00000459273 62 ntBASIC0.67□□□□□ -2.3
CTCFP49711 Y_RNA.651-201ENST00000459380 103 ntBASIC0.67□□□□□ -2.3
CTCFP49711 RNU6-240P-201ENST00000516098 97 ntBASIC0.67□□□□□ -2.3
CTCFP49711 RNU6-182P-201ENST00000516970 105 ntBASIC0.67□□□□□ -2.3
CTCFP49711 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.67□□□□□ -2.3
CTCFP49711 MIR4802-201ENST00000581881 80 ntBASIC0.67□□□□□ -2.3
CTCFP49711 MIR4305-201ENST00000583252 102 ntBASIC0.67□□□□□ -2.3
CTCFP49711 MIR18A-201ENST00000362310 71 ntBASIC0.66□□□□□ -2.3
CTCFP49711 Y_RNA.42-201ENST00000362660 108 ntBASIC0.66□□□□□ -2.3
CTCFP49711 RNU4-11P-201ENST00000365287 132 ntBASIC0.66□□□□□ -2.3
CTCFP49711 SNORA2A-201ENST00000383885 135 ntBASIC0.66□□□□□ -2.3
CTCFP49711 Y_RNA.588-201ENST00000391254 102 ntBASIC0.66□□□□□ -2.3
CTCFP49711 AL512326.2-201ENST00000426359 151 ntBASIC0.66□□□□□ -2.3
CTCFP49711 RPL39P25-201ENST00000449384 154 ntBASIC0.66□□□□□ -2.3
CTCFP49711 RNU2-35P-201ENST00000516446 142 ntBASIC0.66□□□□□ -2.3
CTCFP49711 Y_RNA.686-201ENST00000516548 134 ntBASIC0.66□□□□□ -2.3
CTCFP49711 RNU7-35P-201ENST00000517174 62 ntBASIC0.66□□□□□ -2.3
CTCFP49711 AC112693.2-201ENST00000556538 232 ntBASIC0.66□□□□□ -2.3
CTCFP49711 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.66□□□□□ -2.3
CTCFP49711 RNU6-1130P-201ENST00000365434 107 ntBASIC0.65□□□□□ -2.31
CTCFP49711 SNORA36.2-201ENST00000384004 127 ntBASIC0.65□□□□□ -2.31
CTCFP49711 Y_RNA.580-201ENST00000391004 95 ntBASIC0.65□□□□□ -2.31
CTCFP49711 RNU6-394P-201ENST00000410735 107 ntBASIC0.65□□□□□ -2.31
CTCFP49711 Z95118.1-201ENST00000421372 247 ntBASIC0.65□□□□□ -2.31
CTCFP49711 RNU7-197P-201ENST00000458836 62 ntBASIC0.65□□□□□ -2.31
CTCFP49711 AC002350.1-201ENST00000490759 375 ntBASIC0.65□□□□□ -2.31
CTCFP49711 AP003327.1-201ENST00000529684 127 ntBASIC0.65□□□□□ -2.31
CTCFP49711 FTX_2.1-201ENST00000618816 94 ntBASIC0.65□□□□□ -2.31
CTCFP49711 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
CTCFP49711 RNU6-309P-201ENST00000364573 106 ntBASIC0.64□□□□□ -2.31
CTCFP49711 RNU4-45P-201ENST00000365469 141 ntBASIC0.64□□□□□ -2.31
CTCFP49711 PCNPP3-201ENST00000393579 471 ntBASIC0.64□□□□□ -2.31
CTCFP49711 AL603914.1-201ENST00000401964 204 ntBASIC0.64□□□□□ -2.31
CTCFP49711 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.64□□□□□ -2.31
CTCFP49711 RNU7-79P-201ENST00000516082 62 ntBASIC0.64□□□□□ -2.31
CTCFP49711 AC133485.4-201ENST00000561835 220 ntBASIC0.64□□□□□ -2.31
CTCFP49711 AC138907.4-201ENST00000570107 226 ntBASIC0.64□□□□□ -2.31
CTCFP49711 MIR4491-201ENST00000581087 68 ntBASIC0.64□□□□□ -2.31
CTCFP49711 AC090425.1-201ENST00000610007 140 ntBASIC0.64□□□□□ -2.31
CTCFP49711 Y_RNA.778-201ENST00000620203 90 ntBASIC0.64□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 113 ms