Protein–RNA interactions for Protein: P48436

SOX9, Transcription factor SOX-9, humanhuman

Predictions only

Length 509 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9P48436 RNU6-1100P-201ENST00000410691 104 ntBASIC1.67□□□□□ -2.14
SOX9P48436 RNU6-860P-201ENST00000410860 104 ntBASIC1.67□□□□□ -2.14
SOX9P48436 RNU6-1217P-201ENST00000411276 104 ntBASIC1.67□□□□□ -2.14
SOX9P48436 RNU6-785P-201ENST00000411324 104 ntBASIC1.67□□□□□ -2.14
SOX9P48436 MIR18B-201ENST00000454574 71 ntBASIC1.67□□□□□ -2.14
SOX9P48436 SNORD79.1-201ENST00000516069 84 ntBASIC1.67□□□□□ -2.14
SOX9P48436 RNU6-521P-201ENST00000516663 105 ntBASIC1.67□□□□□ -2.14
SOX9P48436 AC133485.1-201ENST00000567176 124 ntBASIC1.67□□□□□ -2.14
SOX9P48436 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.67□□□□□ -2.14
SOX9P48436 U6.90-201ENST00000614007 104 ntBASIC1.67□□□□□ -2.14
SOX9P48436 U6.70-201ENST00000620287 104 ntBASIC1.67□□□□□ -2.14
SOX9P48436 RNU6-865P-201ENST00000364772 107 ntBASIC1.66□□□□□ -2.14
SOX9P48436 SNORD115-35-201ENST00000365122 82 ntBASIC1.66□□□□□ -2.14
SOX9P48436 RNU6-580P-201ENST00000365159 107 ntBASIC1.66□□□□□ -2.14
SOX9P48436 MIR206-201ENST00000384872 86 ntBASIC1.66□□□□□ -2.14
SOX9P48436 SNORD12-201ENST00000391002 90 ntBASIC1.66□□□□□ -2.14
SOX9P48436 AL031737.1-201ENST00000450125 223 ntBASIC1.66□□□□□ -2.14
SOX9P48436 RNU7-137P-201ENST00000516788 62 ntBASIC1.66□□□□□ -2.14
SOX9P48436 AC023827.1-201ENST00000569247 97 ntBASIC1.66□□□□□ -2.14
SOX9P48436 SNORD53B-201ENST00000577887 78 ntBASIC1.66□□□□□ -2.14
SOX9P48436 RNU6-94P-201ENST00000607728 107 ntBASIC1.66□□□□□ -2.14
SOX9P48436 uc_338.28-201ENST00000612082 187 ntBASIC1.66□□□□□ -2.14
SOX9P48436 AL512310.12-203ENST00000640543 90 ntBASIC1.66□□□□□ -2.14
SOX9P48436 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.65□□□□□ -2.14
SOX9P48436 Y_RNA.163-201ENST00000363702 113 ntBASIC1.65□□□□□ -2.15
SOX9P48436 RNU6-755P-201ENST00000364400 103 ntBASIC1.65□□□□□ -2.15
SOX9P48436 RNU6-60P-201ENST00000364792 103 ntBASIC1.65□□□□□ -2.15
SOX9P48436 RNU6-1113P-201ENST00000384348 107 ntBASIC1.65□□□□□ -2.15
SOX9P48436 MIR1323-201ENST00000408090 73 ntBASIC1.65□□□□□ -2.15
SOX9P48436 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.65□□□□□ -2.15
SOX9P48436 RNU6-994P-201ENST00000410507 111 ntBASIC1.65□□□□□ -2.15
SOX9P48436 AC036111.3-201ENST00000526389 112 ntBASIC1.65□□□□□ -2.15
SOX9P48436 AC105081.1-201ENST00000617727 106 ntBASIC1.65□□□□□ -2.15
SOX9P48436 AC008163.1-202ENST00000636004 2889 ntBASIC1.65□□□□□ -2.15
SOX9P48436 MIR30D-201ENST00000362283 70 ntBASIC1.64□□□□□ -2.15
SOX9P48436 Y_RNA.448-201ENST00000384185 108 ntBASIC1.64□□□□□ -2.15
SOX9P48436 AC106800.4-201ENST00000614905 153 ntBASIC1.64□□□□□ -2.15
SOX9P48436 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.64□□□□□ -2.15
SOX9P48436 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
SOX9P48436 SNORD48-201ENST00000364953 64 ntBASIC1.63□□□□□ -2.15
SOX9P48436 RNA5SP363-201ENST00000365072 115 ntBASIC1.63□□□□□ -2.15
SOX9P48436 Y_RNA.327-201ENST00000365201 102 ntBASIC1.63□□□□□ -2.15
SOX9P48436 SNORA25-201ENST00000384384 134 ntBASIC1.63□□□□□ -2.15
SOX9P48436 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.63□□□□□ -2.15
SOX9P48436 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.62□□□□□ -2.15
SOX9P48436 RNA5SP327-201ENST00000362494 101 ntBASIC1.62□□□□□ -2.15
SOX9P48436 RNU6-934P-201ENST00000365154 107 ntBASIC1.62□□□□□ -2.15
SOX9P48436 RNU6ATAC41P-201ENST00000408600 126 ntBASIC1.62□□□□□ -2.15
SOX9P48436 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.62□□□□□ -2.15
SOX9P48436 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
SOX9P48436 Y_RNA.98-201ENST00000363109 102 ntBASIC1.61□□□□□ -2.15
SOX9P48436 RNU4-36P-201ENST00000364294 144 ntBASIC1.61□□□□□ -2.15
SOX9P48436 RNU6-106P-201ENST00000384405 107 ntBASIC1.61□□□□□ -2.15
SOX9P48436 MIR7-2-201ENST00000384970 110 ntBASIC1.61□□□□□ -2.15
SOX9P48436 SNORA67.6-201ENST00000391093 99 ntBASIC1.61□□□□□ -2.15
SOX9P48436 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.61□□□□□ -2.15
SOX9P48436 MIR1257-201ENST00000408490 117 ntBASIC1.61□□□□□ -2.15
SOX9P48436 SNORD93-201ENST00000408813 74 ntBASIC1.61□□□□□ -2.15
SOX9P48436 RNU6-554P-201ENST00000410466 106 ntBASIC1.61□□□□□ -2.15
SOX9P48436 ATP6V0E1P1-201ENST00000412537 226 ntBASIC1.61□□□□□ -2.15
SOX9P48436 AC067940.1-201ENST00000458411 300 ntBASIC1.61□□□□□ -2.15
SOX9P48436 RNU7-48P-201ENST00000458875 63 ntBASIC1.61□□□□□ -2.15
SOX9P48436 AC141557.1-201ENST00000540982 400 ntBASIC1.61□□□□□ -2.15
SOX9P48436 AC023934.1-201ENST00000574529 2389 ntBASIC1.61□□□□□ -2.15
SOX9P48436 Y_RNA.360-201ENST00000365512 102 ntBASIC1.6□□□□□ -2.15
SOX9P48436 SNORA51.5-201ENST00000384126 131 ntBASIC1.6□□□□□ -2.15
SOX9P48436 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.6□□□□□ -2.15
SOX9P48436 RNU6-1321P-201ENST00000390905 107 ntBASIC1.6□□□□□ -2.15
SOX9P48436 SNORD83.1-201ENST00000411362 77 ntBASIC1.6□□□□□ -2.15
SOX9P48436 RNU6-1018P-201ENST00000516577 106 ntBASIC1.6□□□□□ -2.15
SOX9P48436 RNU1-92P-201ENST00000517017 135 ntBASIC1.6□□□□□ -2.15
SOX9P48436 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC1.6□□□□□ -2.15
SOX9P48436 uc_338.6-201ENST00000613544 171 ntBASIC1.6□□□□□ -2.15
SOX9P48436 SNORA7.1-201ENST00000363750 139 ntBASIC1.59□□□□□ -2.15
SOX9P48436 Y_RNA.328-201ENST00000365208 113 ntBASIC1.59□□□□□ -2.15
SOX9P48436 RNU6-756P-201ENST00000383997 107 ntBASIC1.59□□□□□ -2.15
SOX9P48436 MIR605-201ENST00000385078 83 ntBASIC1.59□□□□□ -2.15
SOX9P48436 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.59□□□□□ -2.15
SOX9P48436 RPS29P28-201ENST00000446439 141 ntBASIC1.59□□□□□ -2.15
SOX9P48436 RNU1-98P-201ENST00000458992 160 ntBASIC1.59□□□□□ -2.15
SOX9P48436 MIR4771-2-201ENST00000577758 74 ntBASIC1.59□□□□□ -2.15
SOX9P48436 MIR4694-201ENST00000578534 80 ntBASIC1.59□□□□□ -2.15
SOX9P48436 MIR4771-1-201ENST00000582617 74 ntBASIC1.59□□□□□ -2.15
SOX9P48436 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.59□□□□□ -2.16
SOX9P48436 Y_RNA.10-201ENST00000362371 110 ntBASIC1.58□□□□□ -2.16
SOX9P48436 SNORA25.8-201ENST00000364831 128 ntBASIC1.58□□□□□ -2.16
SOX9P48436 SNORD38.2-201ENST00000384470 69 ntBASIC1.58□□□□□ -2.16
SOX9P48436 U8.15-201ENST00000390947 134 ntBASIC1.58□□□□□ -2.16
SOX9P48436 RNU6-679P-201ENST00000391003 106 ntBASIC1.58□□□□□ -2.16
SOX9P48436 RPS29P23-201ENST00000458635 123 ntBASIC1.58□□□□□ -2.16
SOX9P48436 AC096720.1-201ENST00000604441 183 ntBASIC1.58□□□□□ -2.16
SOX9P48436 MIR6504-201ENST00000613520 61 ntBASIC1.58□□□□□ -2.16
SOX9P48436 MIR450A1-201ENST00000362262 91 ntBASIC1.57□□□□□ -2.16
SOX9P48436 RNY3P2-201ENST00000362918 102 ntBASIC1.57□□□□□ -2.16
SOX9P48436 RNU6-153P-201ENST00000364422 104 ntBASIC1.57□□□□□ -2.16
SOX9P48436 RNU6-53P-201ENST00000365367 106 ntBASIC1.57□□□□□ -2.16
SOX9P48436 MIR1276-201ENST00000408707 83 ntBASIC1.57□□□□□ -2.16
SOX9P48436 DEFB131E-201ENST00000532329 154 ntBASIC1.57□□□□□ -2.16
SOX9P48436 AC019288.1-201ENST00000557918 224 ntBASIC1.57□□□□□ -2.16
SOX9P48436 MIR4421-201ENST00000578133 69 ntBASIC1.57□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms