Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 SNORD116-18-201ENST00000383961 92 ntBASIC0.61□□□□□ -2.31
MSH2P43246 RNU6-886P-201ENST00000384319 105 ntBASIC0.61□□□□□ -2.31
MSH2P43246 MIR92A1-201ENST00000385233 78 ntBASIC0.61□□□□□ -2.31
MSH2P43246 AC002350.1-201ENST00000490759 375 ntBASIC0.61□□□□□ -2.31
MSH2P43246 RNU6-448P-201ENST00000517052 107 ntBASIC0.61□□□□□ -2.31
MSH2P43246 MIR4491-201ENST00000581087 68 ntBASIC0.61□□□□□ -2.31
MSH2P43246 AL589743.1-201ENST00000551932 2712 ntBASIC0.6□□□□□ -2.31
MSH2P43246 RNU6-403P-201ENST00000363163 104 ntBASIC0.6□□□□□ -2.31
MSH2P43246 RNY1P8-201ENST00000383970 114 ntBASIC0.6□□□□□ -2.31
MSH2P43246 RNU6-804P-201ENST00000384286 107 ntBASIC0.6□□□□□ -2.31
MSH2P43246 RNU7-164P-201ENST00000459221 62 ntBASIC0.6□□□□□ -2.31
MSH2P43246 MIR3144-201ENST00000579460 79 ntBASIC0.6□□□□□ -2.31
MSH2P43246 MIR4714-201ENST00000580728 77 ntBASIC0.6□□□□□ -2.31
MSH2P43246 Y_RNA.13-201ENST00000362403 112 ntBASIC0.59□□□□□ -2.31
MSH2P43246 SNORA32-201ENST00000384072 121 ntBASIC0.59□□□□□ -2.31
MSH2P43246 MIR140-201ENST00000385282 100 ntBASIC0.59□□□□□ -2.31
MSH2P43246 AC018659.1-201ENST00000551083 169 ntBASIC0.59□□□□□ -2.31
MSH2P43246 MIR548AE2-201ENST00000583456 67 ntBASIC0.59□□□□□ -2.31
MSH2P43246 AC098479.1-201ENST00000609225 154 ntBASIC0.59□□□□□ -2.31
MSH2P43246 MIR6082-201ENST00000613604 109 ntBASIC0.59□□□□□ -2.31
MSH2P43246 uc_338.17-201ENST00000619633 179 ntBASIC0.59□□□□□ -2.31
MSH2P43246 Y_RNA.8-201ENST00000362353 102 ntBASIC0.58□□□□□ -2.32
MSH2P43246 Y_RNA.366-201ENST00000365540 102 ntBASIC0.58□□□□□ -2.32
MSH2P43246 RNU6-460P-201ENST00000391158 108 ntBASIC0.58□□□□□ -2.32
MSH2P43246 AC108059.2-201ENST00000434626 151 ntBASIC0.58□□□□□ -2.32
MSH2P43246 RNU7-123P-201ENST00000515911 60 ntBASIC0.58□□□□□ -2.32
MSH2P43246 AP003327.1-201ENST00000529684 127 ntBASIC0.58□□□□□ -2.32
MSH2P43246 Y_RNA.398-201ENST00000383952 99 ntBASIC0.57□□□□□ -2.32
MSH2P43246 MIR513C-201ENST00000401352 84 ntBASIC0.57□□□□□ -2.32
MSH2P43246 RNU6-765P-201ENST00000516916 99 ntBASIC0.57□□□□□ -2.32
MSH2P43246 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.57□□□□□ -2.32
MSH2P43246 MIR3671-201ENST00000580455 88 ntBASIC0.57□□□□□ -2.32
MSH2P43246 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.57□□□□□ -2.32
MSH2P43246 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.56□□□□□ -2.32
MSH2P43246 Y_RNA.298-201ENST00000364960 107 ntBASIC0.56□□□□□ -2.32
MSH2P43246 RNA5SP117-201ENST00000365294 118 ntBASIC0.56□□□□□ -2.32
MSH2P43246 SNORA72.6-201ENST00000384520 129 ntBASIC0.56□□□□□ -2.32
MSH2P43246 Y_RNA.555-201ENST00000384673 110 ntBASIC0.56□□□□□ -2.32
MSH2P43246 Y_RNA.617-201ENST00000410920 90 ntBASIC0.56□□□□□ -2.32
MSH2P43246 AL157398.1-201ENST00000452981 186 ntBASIC0.56□□□□□ -2.32
MSH2P43246 RNU5E-3P-201ENST00000515913 68 ntBASIC0.56□□□□□ -2.32
MSH2P43246 MIR548X2-201ENST00000579776 100 ntBASIC0.56□□□□□ -2.32
MSH2P43246 AC108081.1-201ENST00000604358 221 ntBASIC0.56□□□□□ -2.32
MSH2P43246 AL137067.1-201ENST00000615933 120 ntBASIC0.56□□□□□ -2.32
MSH2P43246 RNU6-915P-201ENST00000364943 103 ntBASIC0.55□□□□□ -2.32
MSH2P43246 Y_RNA.400-201ENST00000383963 111 ntBASIC0.55□□□□□ -2.32
MSH2P43246 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.55□□□□□ -2.32
MSH2P43246 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.55□□□□□ -2.32
MSH2P43246 snoU13.18-201ENST00000459483 104 ntBASIC0.55□□□□□ -2.32
MSH2P43246 SNORA25.12-201ENST00000516202 82 ntBASIC0.55□□□□□ -2.32
MSH2P43246 MIR3121-201ENST00000579680 77 ntBASIC0.55□□□□□ -2.32
MSH2P43246 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.55□□□□□ -2.32
MSH2P43246 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.54□□□□□ -2.32
MSH2P43246 RNA5SP347-201ENST00000362445 119 ntBASIC0.54□□□□□ -2.32
MSH2P43246 Y_RNA.299-201ENST00000364973 94 ntBASIC0.54□□□□□ -2.32
MSH2P43246 RNU4-69P-201ENST00000410677 143 ntBASIC0.54□□□□□ -2.32
MSH2P43246 MIR1270-201ENST00000459320 83 ntBASIC0.54□□□□□ -2.32
MSH2P43246 SNORD67.1-201ENST00000516618 108 ntBASIC0.54□□□□□ -2.32
MSH2P43246 SNORA25.16-201ENST00000516741 121 ntBASIC0.54□□□□□ -2.32
MSH2P43246 RNU7-137P-201ENST00000516788 62 ntBASIC0.54□□□□□ -2.32
MSH2P43246 Y_RNA.355-201ENST00000365462 98 ntBASIC0.53□□□□□ -2.32
MSH2P43246 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.53□□□□□ -2.32
MSH2P43246 RN7SKP12-201ENST00000516275 143 ntBASIC0.53□□□□□ -2.32
MSH2P43246 Y_RNA.692-201ENST00000516627 105 ntBASIC0.53□□□□□ -2.32
MSH2P43246 MTND5P41-201ENST00000517498 206 ntBASIC0.53□□□□□ -2.32
MSH2P43246 MIR3678-201ENST00000578455 94 ntBASIC0.53□□□□□ -2.32
MSH2P43246 AL359881.1-201ENST00000602916 267 ntBASIC0.53□□□□□ -2.32
MSH2P43246 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.53□□□□□ -2.32
MSH2P43246 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.53□□□□□ -2.32
MSH2P43246 AP001340.1-201ENST00000624405 217 ntBASIC0.53□□□□□ -2.32
MSH2P43246 SNORD114-10-201ENST00000363409 72 ntBASIC0.52□□□□□ -2.33
MSH2P43246 Y_RNA.215-201ENST00000364204 112 ntBASIC0.52□□□□□ -2.33
MSH2P43246 Y_RNA.508-201ENST00000384502 114 ntBASIC0.52□□□□□ -2.33
MSH2P43246 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.52□□□□□ -2.33
MSH2P43246 RNU6-679P-201ENST00000391003 106 ntBASIC0.52□□□□□ -2.33
MSH2P43246 RNY4P20-201ENST00000516678 93 ntBASIC0.52□□□□□ -2.33
MSH2P43246 AP001328.1-201ENST00000528550 176 ntBASIC0.52□□□□□ -2.33
MSH2P43246 AC022709.1-201ENST00000615967 87 ntBASIC0.52□□□□□ -2.33
MSH2P43246 AC021753.1-201ENST00000635724 168 ntBASIC0.52□□□□□ -2.33
MSH2P43246 RNA5SP133-201ENST00000363368 119 ntBASIC0.51□□□□□ -2.33
MSH2P43246 Y_RNA.180-201ENST00000363867 113 ntBASIC0.51□□□□□ -2.33
MSH2P43246 RNA5SP94-201ENST00000516917 108 ntBASIC0.51□□□□□ -2.33
MSH2P43246 AC022523.2-201ENST00000561045 150 ntBASIC0.51□□□□□ -2.33
MSH2P43246 uc_338.16-201ENST00000621804 95 ntBASIC0.51□□□□□ -2.33
MSH2P43246 Y_RNA.32-201ENST00000362589 110 ntBASIC0.5□□□□□ -2.33
MSH2P43246 Y_RNA.420-201ENST00000384043 110 ntBASIC0.5□□□□□ -2.33
MSH2P43246 Y_RNA.464-201ENST00000384282 110 ntBASIC0.5□□□□□ -2.33
MSH2P43246 Y_RNA.536-201ENST00000384621 113 ntBASIC0.5□□□□□ -2.33
MSH2P43246 MIR569-201ENST00000385228 96 ntBASIC0.5□□□□□ -2.33
MSH2P43246 RNU6-1194P-201ENST00000516208 104 ntBASIC0.5□□□□□ -2.33
MSH2P43246 Y_RNA.697-201ENST00000516776 113 ntBASIC0.5□□□□□ -2.33
MSH2P43246 DEFB131E-201ENST00000532329 154 ntBASIC0.5□□□□□ -2.33
MSH2P43246 MTND5P34-201ENST00000568888 325 ntBASIC0.5□□□□□ -2.33
MSH2P43246 MIR6515-201ENST00000619843 57 ntBASIC0.5□□□□□ -2.33
MSH2P43246 AC092634.7-201ENST00000621022 103 ntBASIC0.5□□□□□ -2.33
MSH2P43246 U6.109-201ENST00000636749 87 ntBASIC0.5□□□□□ -2.33
MSH2P43246 RNU4-58P-201ENST00000363192 141 ntBASIC0.49□□□□□ -2.33
MSH2P43246 Y_RNA.174-201ENST00000363781 105 ntBASIC0.49□□□□□ -2.33
MSH2P43246 RNU6-291P-201ENST00000384720 107 ntBASIC0.49□□□□□ -2.33
MSH2P43246 RNU6-1104P-201ENST00000384723 104 ntBASIC0.49□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 129.4 ms