Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 MIR4714-201ENST00000580728 77 ntBASIC0.66□□□□□ -2.3
SOX3P41225 MIR548AE2-201ENST00000583456 67 ntBASIC0.66□□□□□ -2.3
SOX3P41225 AC008608.1-201ENST00000603910 127 ntBASIC0.66□□□□□ -2.3
SOX3P41225 AC021443.1-201ENST00000604478 211 ntBASIC0.66□□□□□ -2.3
SOX3P41225 AC022709.1-201ENST00000615967 87 ntBASIC0.66□□□□□ -2.3
SOX3P41225 AC023934.1-201ENST00000574529 2389 ntBASIC0.65□□□□□ -2.3
SOX3P41225 SNORD115-2-201ENST00000362842 82 ntBASIC0.65□□□□□ -2.31
SOX3P41225 Y_RNA.298-201ENST00000364960 107 ntBASIC0.65□□□□□ -2.31
SOX3P41225 SNORD115-20-201ENST00000365099 82 ntBASIC0.65□□□□□ -2.31
SOX3P41225 SNORA32-201ENST00000384072 121 ntBASIC0.65□□□□□ -2.31
SOX3P41225 Y_RNA.531-201ENST00000384589 121 ntBASIC0.65□□□□□ -2.31
SOX3P41225 MIR520F-201ENST00000384824 87 ntBASIC0.65□□□□□ -2.31
SOX3P41225 MIR508-201ENST00000384857 115 ntBASIC0.65□□□□□ -2.31
SOX3P41225 MIR938-201ENST00000401216 83 ntBASIC0.65□□□□□ -2.31
SOX3P41225 RNA5SP237-201ENST00000410414 113 ntBASIC0.65□□□□□ -2.31
SOX3P41225 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC0.65□□□□□ -2.31
SOX3P41225 RNU7-164P-201ENST00000459221 62 ntBASIC0.65□□□□□ -2.31
SOX3P41225 RNY4P20-201ENST00000516678 93 ntBASIC0.65□□□□□ -2.31
SOX3P41225 RNU7-35P-201ENST00000517174 62 ntBASIC0.65□□□□□ -2.31
SOX3P41225 AP001328.1-201ENST00000528550 176 ntBASIC0.65□□□□□ -2.31
SOX3P41225 AL359881.1-201ENST00000602916 267 ntBASIC0.65□□□□□ -2.31
SOX3P41225 AL137067.1-201ENST00000615933 120 ntBASIC0.65□□□□□ -2.31
SOX3P41225 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.65□□□□□ -2.31
SOX3P41225 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.64□□□□□ -2.31
SOX3P41225 RNU1-119P-201ENST00000391122 165 ntBASIC0.64□□□□□ -2.31
SOX3P41225 Y_RNA.586-201ENST00000391146 98 ntBASIC0.64□□□□□ -2.31
SOX3P41225 RNU6-735P-201ENST00000410612 107 ntBASIC0.64□□□□□ -2.31
SOX3P41225 AC244098.3-201ENST00000424803 96 ntBASIC0.64□□□□□ -2.31
SOX3P41225 RNU7-113P-201ENST00000459273 62 ntBASIC0.64□□□□□ -2.31
SOX3P41225 AL589743.1-201ENST00000551932 2712 ntBASIC0.64□□□□□ -2.31
SOX3P41225 RNU6-235P-201ENST00000362644 107 ntBASIC0.63□□□□□ -2.31
SOX3P41225 RNU6-110P-201ENST00000384508 104 ntBASIC0.63□□□□□ -2.31
SOX3P41225 MIR520H-201ENST00000385126 88 ntBASIC0.63□□□□□ -2.31
SOX3P41225 Y_RNA.588-201ENST00000391254 102 ntBASIC0.63□□□□□ -2.31
SOX3P41225 MIR1257-201ENST00000408490 117 ntBASIC0.63□□□□□ -2.31
SOX3P41225 Y_RNA.617-201ENST00000410920 90 ntBASIC0.63□□□□□ -2.31
SOX3P41225 AL022718.1-201ENST00000412004 84 ntBASIC0.63□□□□□ -2.31
SOX3P41225 RN7SKP19-201ENST00000516016 252 ntBASIC0.63□□□□□ -2.31
SOX3P41225 RNU7-79P-201ENST00000516082 62 ntBASIC0.63□□□□□ -2.31
SOX3P41225 RNA5SP33-201ENST00000516687 98 ntBASIC0.63□□□□□ -2.31
SOX3P41225 AC011195.1-201ENST00000578177 177 ntBASIC0.63□□□□□ -2.31
SOX3P41225 SNORD92-201ENST00000585078 85 ntBASIC0.63□□□□□ -2.31
SOX3P41225 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.62□□□□□ -2.31
SOX3P41225 Y_RNA.218-201ENST00000364218 104 ntBASIC0.62□□□□□ -2.31
SOX3P41225 RNU6-949P-201ENST00000384040 107 ntBASIC0.62□□□□□ -2.31
SOX3P41225 RNU6-1307P-201ENST00000391012 103 ntBASIC0.62□□□□□ -2.31
SOX3P41225 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.62□□□□□ -2.31
SOX3P41225 RNU6-447P-201ENST00000410293 104 ntBASIC0.62□□□□□ -2.31
SOX3P41225 RNU6-1118P-201ENST00000410382 104 ntBASIC0.62□□□□□ -2.31
SOX3P41225 RNU6-1076P-201ENST00000410397 104 ntBASIC0.62□□□□□ -2.31
SOX3P41225 RNU6-355P-201ENST00000410427 104 ntBASIC0.62□□□□□ -2.31
SOX3P41225 RNU6-791P-201ENST00000410467 104 ntBASIC0.62□□□□□ -2.31
SOX3P41225 RNU6-705P-201ENST00000410601 104 ntBASIC0.62□□□□□ -2.31
SOX3P41225 RNU6-1100P-201ENST00000410691 104 ntBASIC0.62□□□□□ -2.31
SOX3P41225 RNU6-860P-201ENST00000410860 104 ntBASIC0.62□□□□□ -2.31
SOX3P41225 RNU6-1086P-201ENST00000410930 100 ntBASIC0.62□□□□□ -2.31
SOX3P41225 RNU6-1217P-201ENST00000411276 104 ntBASIC0.62□□□□□ -2.31
SOX3P41225 RNU6-785P-201ENST00000411324 104 ntBASIC0.62□□□□□ -2.31
SOX3P41225 Y_RNA.630-201ENST00000411370 108 ntBASIC0.62□□□□□ -2.31
SOX3P41225 SUMO1P3-201ENST00000439961 304 ntBASIC0.62□□□□□ -2.31
SOX3P41225 AL158147.1-201ENST00000443970 75 ntBASIC0.62□□□□□ -2.31
SOX3P41225 Y_RNA.692-201ENST00000516627 105 ntBASIC0.62□□□□□ -2.31
SOX3P41225 Y_RNA.703-201ENST00000516846 111 ntBASIC0.62□□□□□ -2.31
SOX3P41225 RNU6-971P-201ENST00000516920 106 ntBASIC0.62□□□□□ -2.31
SOX3P41225 RNU7-156P-201ENST00000517214 74 ntBASIC0.62□□□□□ -2.31
SOX3P41225 AL590095.2-201ENST00000604136 117 ntBASIC0.62□□□□□ -2.31
SOX3P41225 U7.2-201ENST00000607576 63 ntBASIC0.62□□□□□ -2.31
SOX3P41225 U6.90-201ENST00000614007 104 ntBASIC0.62□□□□□ -2.31
SOX3P41225 U6.70-201ENST00000620287 104 ntBASIC0.62□□□□□ -2.31
SOX3P41225 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC0.62□□□□□ -2.31
SOX3P41225 RNU6-746P-201ENST00000384112 109 ntBASIC0.61□□□□□ -2.31
SOX3P41225 RNU6-364P-201ENST00000384387 107 ntBASIC0.61□□□□□ -2.31
SOX3P41225 MIR573-201ENST00000384964 99 ntBASIC0.61□□□□□ -2.31
SOX3P41225 SNORD93-201ENST00000408813 74 ntBASIC0.61□□□□□ -2.31
SOX3P41225 RNU7-107P-201ENST00000459121 61 ntBASIC0.61□□□□□ -2.31
SOX3P41225 SNORD67.1-201ENST00000516618 108 ntBASIC0.61□□□□□ -2.31
SOX3P41225 RNU6-1234P-201ENST00000516877 103 ntBASIC0.61□□□□□ -2.31
SOX3P41225 MIR8066-201ENST00000617280 78 ntBASIC0.61□□□□□ -2.31
SOX3P41225 MIR6515-201ENST00000619843 57 ntBASIC0.61□□□□□ -2.31
SOX3P41225 RNY1P8-201ENST00000383970 114 ntBASIC0.6□□□□□ -2.31
SOX3P41225 MIR489-201ENST00000384923 84 ntBASIC0.6□□□□□ -2.31
SOX3P41225 MIRLET7F2-201ENST00000385277 83 ntBASIC0.6□□□□□ -2.31
SOX3P41225 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.6□□□□□ -2.31
SOX3P41225 RNU7-102P-201ENST00000458948 62 ntBASIC0.6□□□□□ -2.31
SOX3P41225 COX6CP6-201ENST00000490840 228 ntBASIC0.6□□□□□ -2.31
SOX3P41225 AC090897.1-201ENST00000580909 226 ntBASIC0.6□□□□□ -2.31
SOX3P41225 MIR4491-201ENST00000581087 68 ntBASIC0.6□□□□□ -2.31
SOX3P41225 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.6□□□□□ -2.31
SOX3P41225 Y_RNA.42-201ENST00000362660 108 ntBASIC0.59□□□□□ -2.31
SOX3P41225 SNORA40-201ENST00000388090 126 ntBASIC0.59□□□□□ -2.31
SOX3P41225 RPL39P25-201ENST00000449384 154 ntBASIC0.59□□□□□ -2.31
SOX3P41225 RNA5SP436-201ENST00000516020 115 ntBASIC0.59□□□□□ -2.31
SOX3P41225 RNU7-137P-201ENST00000516788 62 ntBASIC0.59□□□□□ -2.31
SOX3P41225 Y_RNA.773-201ENST00000607168 90 ntBASIC0.59□□□□□ -2.31
SOX3P41225 AC105081.1-201ENST00000617727 106 ntBASIC0.59□□□□□ -2.31
SOX3P41225 AC087741.2-201ENST00000619415 172 ntBASIC0.59□□□□□ -2.31
SOX3P41225 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.58□□□□□ -2.32
SOX3P41225 Y_RNA.343-201ENST00000365354 112 ntBASIC0.58□□□□□ -2.32
SOX3P41225 MIR1263-201ENST00000408324 86 ntBASIC0.58□□□□□ -2.32
SOX3P41225 RNU4-83P-201ENST00000410863 133 ntBASIC0.58□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 188.9 ms