Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 RNU6-919P-201ENST00000516731 104 ntBASIC1.09□□□□□ -2.23
HOXD3P31249 FAM71BP1-201ENST00000604431 523 ntBASIC1.09□□□□□ -2.23
HOXD3P31249 MIR6078-201ENST00000611069 100 ntBASIC1.09□□□□□ -2.23
HOXD3P31249 MIR6504-201ENST00000613520 61 ntBASIC1.09□□□□□ -2.23
HOXD3P31249 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.08□□□□□ -2.24
HOXD3P31249 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
HOXD3P31249 MIR377-201ENST00000362145 69 ntBASIC1.08□□□□□ -2.24
HOXD3P31249 Y_RNA.85-201ENST00000363014 111 ntBASIC1.08□□□□□ -2.24
HOXD3P31249 SNORD115-19-201ENST00000363098 82 ntBASIC1.08□□□□□ -2.24
HOXD3P31249 SNORD115-18-201ENST00000363293 82 ntBASIC1.08□□□□□ -2.24
HOXD3P31249 Y_RNA.191-201ENST00000363972 113 ntBASIC1.08□□□□□ -2.24
HOXD3P31249 SNORD115-17-201ENST00000364612 82 ntBASIC1.08□□□□□ -2.24
HOXD3P31249 SNORD113.3-201ENST00000364630 78 ntBASIC1.08□□□□□ -2.24
HOXD3P31249 RNU6-1107P-201ENST00000364817 104 ntBASIC1.08□□□□□ -2.24
HOXD3P31249 SNORA25.8-201ENST00000364831 128 ntBASIC1.08□□□□□ -2.24
HOXD3P31249 RNU6-939P-201ENST00000384634 107 ntBASIC1.08□□□□□ -2.24
HOXD3P31249 MIR7-2-201ENST00000384970 110 ntBASIC1.08□□□□□ -2.24
HOXD3P31249 SNORD77B-201ENST00000391112 67 ntBASIC1.08□□□□□ -2.24
HOXD3P31249 AC002429.1-201ENST00000437672 148 ntBASIC1.08□□□□□ -2.24
HOXD3P31249 RNA5SP102-201ENST00000516865 106 ntBASIC1.08□□□□□ -2.24
HOXD3P31249 AC019288.1-201ENST00000557918 224 ntBASIC1.08□□□□□ -2.24
HOXD3P31249 RNU6-94P-201ENST00000607728 107 ntBASIC1.08□□□□□ -2.24
HOXD3P31249 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
HOXD3P31249 Y_RNA.168-201ENST00000363740 102 ntBASIC1.07□□□□□ -2.24
HOXD3P31249 U8.6-201ENST00000364939 135 ntBASIC1.07□□□□□ -2.24
HOXD3P31249 RNU6-53P-201ENST00000365367 106 ntBASIC1.07□□□□□ -2.24
HOXD3P31249 SNORA25-201ENST00000384384 134 ntBASIC1.07□□□□□ -2.24
HOXD3P31249 MIR206-201ENST00000384872 86 ntBASIC1.07□□□□□ -2.24
HOXD3P31249 MIR222-201ENST00000384992 110 ntBASIC1.07□□□□□ -2.24
HOXD3P31249 MIR605-201ENST00000385078 83 ntBASIC1.07□□□□□ -2.24
HOXD3P31249 MIR618-201ENST00000385287 98 ntBASIC1.07□□□□□ -2.24
HOXD3P31249 U8.15-201ENST00000390947 134 ntBASIC1.07□□□□□ -2.24
HOXD3P31249 SNORA7.5-201ENST00000410672 110 ntBASIC1.07□□□□□ -2.24
HOXD3P31249 RNU1-123P-201ENST00000458950 160 ntBASIC1.07□□□□□ -2.24
HOXD3P31249 RPL39P34-201ENST00000477141 156 ntBASIC1.07□□□□□ -2.24
HOXD3P31249 RNU6-521P-201ENST00000516663 105 ntBASIC1.07□□□□□ -2.24
HOXD3P31249 RNU7-137P-201ENST00000516788 62 ntBASIC1.07□□□□□ -2.24
HOXD3P31249 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.07□□□□□ -2.24
HOXD3P31249 MIR4452-201ENST00000583004 71 ntBASIC1.07□□□□□ -2.24
HOXD3P31249 AL078603.1-201ENST00000603824 313 ntBASIC1.07□□□□□ -2.24
HOXD3P31249 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
HOXD3P31249 RNU4-67P-201ENST00000364569 141 ntBASIC1.06□□□□□ -2.24
HOXD3P31249 RNU6-949P-201ENST00000384040 107 ntBASIC1.06□□□□□ -2.24
HOXD3P31249 RNU6-1321P-201ENST00000390905 107 ntBASIC1.06□□□□□ -2.24
HOXD3P31249 RNU6-816P-201ENST00000390914 107 ntBASIC1.06□□□□□ -2.24
HOXD3P31249 RNU6-1268P-201ENST00000391214 107 ntBASIC1.06□□□□□ -2.24
HOXD3P31249 RNU6-1239P-201ENST00000391310 107 ntBASIC1.06□□□□□ -2.24
HOXD3P31249 AC096949.1-201ENST00000412047 152 ntBASIC1.06□□□□□ -2.24
HOXD3P31249 MRPL35P3-201ENST00000421557 364 ntBASIC1.06□□□□□ -2.24
HOXD3P31249 AL353813.1-201ENST00000440700 253 ntBASIC1.06□□□□□ -2.24
HOXD3P31249 RNU7-90P-201ENST00000459216 62 ntBASIC1.06□□□□□ -2.24
HOXD3P31249 AC068339.1-201ENST00000526965 141 ntBASIC1.06□□□□□ -2.24
HOXD3P31249 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC1.06□□□□□ -2.24
HOXD3P31249 AC106800.4-201ENST00000614905 153 ntBASIC1.06□□□□□ -2.24
HOXD3P31249 AC012676.2-201ENST00000619258 186 ntBASIC1.06□□□□□ -2.24
HOXD3P31249 MIR6734-201ENST00000621166 68 ntBASIC1.06□□□□□ -2.24
HOXD3P31249 AL162726.3-218ENST00000636401 95 ntBASIC1.06□□□□□ -2.24
HOXD3P31249 RNU6-363P-201ENST00000362895 105 ntBASIC1.05□□□□□ -2.24
HOXD3P31249 SNORD115-35-201ENST00000365122 82 ntBASIC1.05□□□□□ -2.24
HOXD3P31249 RNU6-934P-201ENST00000365154 107 ntBASIC1.05□□□□□ -2.24
HOXD3P31249 RNU6-679P-201ENST00000391003 106 ntBASIC1.05□□□□□ -2.24
HOXD3P31249 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.05□□□□□ -2.24
HOXD3P31249 RPL39P25-201ENST00000449384 154 ntBASIC1.05□□□□□ -2.24
HOXD3P31249 RNU7-2P-201ENST00000516096 62 ntBASIC1.05□□□□□ -2.24
HOXD3P31249 MIR5009-201ENST00000578736 100 ntBASIC1.05□□□□□ -2.24
HOXD3P31249 SNORA4-201ENST00000584302 138 ntBASIC1.05□□□□□ -2.24
HOXD3P31249 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.05□□□□□ -2.24
HOXD3P31249 AC023934.1-201ENST00000574529 2389 ntBASIC1.04□□□□□ -2.24
HOXD3P31249 Y_RNA.81-201ENST00000362997 102 ntBASIC1.04□□□□□ -2.24
HOXD3P31249 Y_RNA.155-201ENST00000363632 101 ntBASIC1.04□□□□□ -2.24
HOXD3P31249 RNU6-1014P-201ENST00000383940 103 ntBASIC1.04□□□□□ -2.24
HOXD3P31249 Y_RNA.448-201ENST00000384185 108 ntBASIC1.04□□□□□ -2.24
HOXD3P31249 RNU6-106P-201ENST00000384405 107 ntBASIC1.04□□□□□ -2.24
HOXD3P31249 SNORD111-201ENST00000408139 94 ntBASIC1.04□□□□□ -2.24
HOXD3P31249 PDCD5P2-201ENST00000507570 312 ntBASIC1.04□□□□□ -2.24
HOXD3P31249 RNU7-40P-201ENST00000516397 64 ntBASIC1.04□□□□□ -2.24
HOXD3P31249 RNU6-412P-201ENST00000516434 106 ntBASIC1.04□□□□□ -2.24
HOXD3P31249 AC020891.4-201ENST00000605745 93 ntBASIC1.04□□□□□ -2.24
HOXD3P31249 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.04□□□□□ -2.24
HOXD3P31249 uc_338.28-201ENST00000612082 187 ntBASIC1.04□□□□□ -2.24
HOXD3P31249 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.03□□□□□ -2.24
HOXD3P31249 SNORD114-10-201ENST00000363409 72 ntBASIC1.03□□□□□ -2.24
HOXD3P31249 SNORD114-22-201ENST00000365423 72 ntBASIC1.03□□□□□ -2.24
HOXD3P31249 RNU6-42P-201ENST00000384165 107 ntBASIC1.03□□□□□ -2.24
HOXD3P31249 SNORA19.1-201ENST00000410656 129 ntBASIC1.03□□□□□ -2.24
HOXD3P31249 UBL5P1-201ENST00000507979 193 ntBASIC1.03□□□□□ -2.24
HOXD3P31249 MIR4771-2-201ENST00000577758 74 ntBASIC1.03□□□□□ -2.24
HOXD3P31249 MIR4771-1-201ENST00000582617 74 ntBASIC1.03□□□□□ -2.24
HOXD3P31249 AC027335.2-201ENST00000624030 375 ntBASIC1.03□□□□□ -2.24
HOXD3P31249 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.02□□□□□ -2.25
HOXD3P31249 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.02□□□□□ -2.25
HOXD3P31249 SNORD114-27-201ENST00000363766 70 ntBASIC1.02□□□□□ -2.25
HOXD3P31249 Y_RNA.309-201ENST00000365046 111 ntBASIC1.02□□□□□ -2.25
HOXD3P31249 Y_RNA.507-201ENST00000384500 99 ntBASIC1.02□□□□□ -2.25
HOXD3P31249 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.02□□□□□ -2.25
HOXD3P31249 SNORD93-201ENST00000408813 74 ntBASIC1.02□□□□□ -2.25
HOXD3P31249 RNU6-554P-201ENST00000410466 106 ntBASIC1.02□□□□□ -2.25
HOXD3P31249 RNU6-733P-201ENST00000410759 104 ntBASIC1.02□□□□□ -2.25
HOXD3P31249 MIR18B-201ENST00000454574 71 ntBASIC1.02□□□□□ -2.25
HOXD3P31249 RNU7-185P-201ENST00000459215 60 ntBASIC1.02□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 232.8 ms