Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC104389.3-201ENST00000445629 235 ntBASIC2.37□□□□□ -2.03
COL8A1P27658 Z96811.1-201ENST00000445880 108 ntBASIC2.37□□□□□ -2.03
COL8A1P27658 MIR2113-201ENST00000459007 91 ntBASIC2.37□□□□□ -2.03
COL8A1P27658 AP004217.1-201ENST00000480579 346 ntBASIC2.37□□□□□ -2.03
COL8A1P27658 RN7SL499P-201ENST00000481141 276 ntBASIC2.37□□□□□ -2.03
COL8A1P27658 RNU7-41P-201ENST00000515917 61 ntBASIC2.37□□□□□ -2.03
COL8A1P27658 AC022202.1-201ENST00000613515 211 ntBASIC2.37□□□□□ -2.03
COL8A1P27658 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
COL8A1P27658 MIR30D-201ENST00000362283 70 ntBASIC2.36□□□□□ -2.03
COL8A1P27658 SNORD113.1-201ENST00000363280 73 ntBASIC2.36□□□□□ -2.03
COL8A1P27658 SNORD56.5-201ENST00000364281 72 ntBASIC2.36□□□□□ -2.03
COL8A1P27658 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.36□□□□□ -2.03
COL8A1P27658 UBBP3-201ENST00000445497 241 ntBASIC2.36□□□□□ -2.03
COL8A1P27658 RNU7-26P-201ENST00000458980 63 ntBASIC2.36□□□□□ -2.03
COL8A1P27658 RN7SL633P-201ENST00000488974 297 ntBASIC2.36□□□□□ -2.03
COL8A1P27658 AC097510.1-201ENST00000510945 133 ntBASIC2.36□□□□□ -2.03
COL8A1P27658 RNVU1-2-201ENST00000516326 135 ntBASIC2.36□□□□□ -2.03
COL8A1P27658 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
COL8A1P27658 U6.81-201ENST00000612550 106 ntBASIC2.36□□□□□ -2.03
COL8A1P27658 VPS35-212ENST00000640313 141 ntTSL 5 BASIC2.36□□□□□ -2.03
COL8A1P27658 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC2.36□□□□□ -2.03
COL8A1P27658 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
COL8A1P27658 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.36□□□□□ -2.03
COL8A1P27658 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
COL8A1P27658 AL161431.1-201ENST00000618966 4205 ntBASIC2.35□□□□□ -2.03
COL8A1P27658 RNU6-112P-201ENST00000363599 104 ntBASIC2.35□□□□□ -2.03
COL8A1P27658 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
COL8A1P27658 HMGN2P35-201ENST00000412164 270 ntBASIC2.35□□□□□ -2.03
COL8A1P27658 RNU2-19P-201ENST00000517288 84 ntBASIC2.35□□□□□ -2.03
COL8A1P27658 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.35□□□□□ -2.03
COL8A1P27658 MAPK10-266ENST00000641066 6555 ntBASIC2.35□□□□□ -2.03
COL8A1P27658 CPD-202ENST00000543464 4007 ntTSL 2 BASIC2.34□□□□□ -2.03
COL8A1P27658 ZNF209P-201ENST00000593450 2304 ntBASIC2.34□□□□□ -2.03
COL8A1P27658 RNU4-58P-201ENST00000363192 141 ntBASIC2.34□□□□□ -2.03
COL8A1P27658 RNA5SP48-201ENST00000363969 126 ntBASIC2.34□□□□□ -2.03
COL8A1P27658 SNORA48.1-201ENST00000390879 135 ntBASIC2.34□□□□□ -2.03
COL8A1P27658 SNORA40.6-201ENST00000391153 128 ntBASIC2.34□□□□□ -2.03
COL8A1P27658 RNA5SP137-201ENST00000516833 135 ntBASIC2.34□□□□□ -2.03
COL8A1P27658 PRELID3BP2-201ENST00000605362 201 ntBASIC2.34□□□□□ -2.03
COL8A1P27658 MIR6740-201ENST00000618268 113 ntBASIC2.34□□□□□ -2.03
COL8A1P27658 Y_RNA.118-201ENST00000363300 101 ntBASIC2.33□□□□□ -2.04
COL8A1P27658 RNU6-829P-201ENST00000363700 112 ntBASIC2.33□□□□□ -2.04
COL8A1P27658 Y_RNA.236-201ENST00000364427 111 ntBASIC2.33□□□□□ -2.04
COL8A1P27658 RNU6-53P-201ENST00000365367 106 ntBASIC2.33□□□□□ -2.04
COL8A1P27658 RNA5SP465-201ENST00000391195 109 ntBASIC2.33□□□□□ -2.04
COL8A1P27658 MIR1283-2-201ENST00000408621 87 ntBASIC2.33□□□□□ -2.04
COL8A1P27658 SNORD88.1-201ENST00000408684 91 ntBASIC2.33□□□□□ -2.04
COL8A1P27658 RNU11-2P-201ENST00000516898 142 ntBASIC2.33□□□□□ -2.04
COL8A1P27658 MIR3140-201ENST00000583685 90 ntBASIC2.33□□□□□ -2.04
COL8A1P27658 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.33□□□□□ -2.04
COL8A1P27658 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.33□□□□□ -2.04
COL8A1P27658 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.33□□□□□ -2.04
COL8A1P27658 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.33□□□□□ -2.04
COL8A1P27658 RNU6-664P-201ENST00000362381 107 ntBASIC2.32□□□□□ -2.04
COL8A1P27658 SNORA24B-201ENST00000384176 131 ntBASIC2.32□□□□□ -2.04
COL8A1P27658 MIR519A1-201ENST00000385257 85 ntBASIC2.32□□□□□ -2.04
COL8A1P27658 MT-TF-201ENST00000387314 71 ntBASIC2.32□□□□□ -2.04
COL8A1P27658 RNU6-1165P-201ENST00000410119 107 ntBASIC2.32□□□□□ -2.04
COL8A1P27658 HMGN2P23-201ENST00000456759 269 ntBASIC2.32□□□□□ -2.04
COL8A1P27658 RNU6-531P-201ENST00000516694 104 ntBASIC2.32□□□□□ -2.04
COL8A1P27658 MIR3126-201ENST00000577443 74 ntBASIC2.32□□□□□ -2.04
COL8A1P27658 MIR5089-201ENST00000580047 84 ntBASIC2.32□□□□□ -2.04
COL8A1P27658 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.32□□□□□ -2.04
COL8A1P27658 DLEU2_3.1-201ENST00000620005 73 ntBASIC2.32□□□□□ -2.04
COL8A1P27658 TRDV1-202ENST00000621643 102 ntBASIC2.32□□□□□ -2.04
COL8A1P27658 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.32□□□□□ -2.04
COL8A1P27658 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
COL8A1P27658 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.31□□□□□ -2.04
COL8A1P27658 MIR653-201ENST00000385279 96 ntBASIC2.31□□□□□ -2.04
COL8A1P27658 RNU6-604P-201ENST00000390917 100 ntBASIC2.31□□□□□ -2.04
COL8A1P27658 MIR1287-201ENST00000408492 90 ntBASIC2.31□□□□□ -2.04
COL8A1P27658 RNU6-322P-201ENST00000516010 103 ntBASIC2.31□□□□□ -2.04
COL8A1P27658 RNA5SP320-201ENST00000516263 124 ntBASIC2.31□□□□□ -2.04
COL8A1P27658 SNORA9.3-201ENST00000516383 129 ntBASIC2.31□□□□□ -2.04
COL8A1P27658 MIR4696-201ENST00000581431 70 ntBASIC2.31□□□□□ -2.04
COL8A1P27658 MIR4264-201ENST00000583520 66 ntBASIC2.31□□□□□ -2.04
COL8A1P27658 Z82195.2-201ENST00000612348 18351 ntBASIC2.3□□□□□ -2.04
COL8A1P27658 RNU6-1123P-201ENST00000362347 106 ntBASIC2.3□□□□□ -2.04
COL8A1P27658 RNU6-824P-201ENST00000363724 104 ntBASIC2.3□□□□□ -2.04
COL8A1P27658 SNORD101-201ENST00000384027 73 ntBASIC2.3□□□□□ -2.04
COL8A1P27658 RNU1-138P-201ENST00000384093 164 ntBASIC2.3□□□□□ -2.04
COL8A1P27658 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
COL8A1P27658 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
COL8A1P27658 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.29□□□□□ -2.04
COL8A1P27658 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.29□□□□□ -2.04
COL8A1P27658 SNORD114-1-201ENST00000362705 72 ntBASIC2.29□□□□□ -2.04
COL8A1P27658 RNU6-1260P-201ENST00000362944 107 ntBASIC2.29□□□□□ -2.04
COL8A1P27658 VTRNA1-1-201ENST00000363120 99 ntBASIC2.29□□□□□ -2.04
COL8A1P27658 RNU6-396P-201ENST00000365369 105 ntBASIC2.29□□□□□ -2.04
COL8A1P27658 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
COL8A1P27658 RNU7-195P-201ENST00000458793 62 ntBASIC2.29□□□□□ -2.04
COL8A1P27658 SNORA31.15-201ENST00000516771 132 ntBASIC2.29□□□□□ -2.04
COL8A1P27658 MIR4491-201ENST00000581087 68 ntBASIC2.29□□□□□ -2.04
COL8A1P27658 RNU7-10P-201ENST00000607194 63 ntBASIC2.29□□□□□ -2.04
COL8A1P27658 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.28□□□□□ -2.04
COL8A1P27658 AC016717.2-201ENST00000609089 5141 ntBASIC2.28□□□□□ -2.04
COL8A1P27658 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.28□□□□□ -2.04
COL8A1P27658 RNU1-91P-201ENST00000364746 163 ntBASIC2.28□□□□□ -2.04
COL8A1P27658 RNU6-1187P-201ENST00000364771 110 ntBASIC2.28□□□□□ -2.04
COL8A1P27658 SNORD100-201ENST00000408573 76 ntBASIC2.28□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 372.3 ms