Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC096949.1-201ENST00000412047 152 ntBASIC0.77□□□□□ -2.29
MSH3P20585 SUMO1P3-201ENST00000439961 304 ntBASIC0.77□□□□□ -2.29
MSH3P20585 RNU7-56P-201ENST00000458744 62 ntBASIC0.77□□□□□ -2.29
MSH3P20585 RNU6-1211P-201ENST00000459179 105 ntBASIC0.77□□□□□ -2.29
MSH3P20585 MIR1270-201ENST00000459320 83 ntBASIC0.77□□□□□ -2.29
MSH3P20585 RNU6-781P-201ENST00000516377 101 ntBASIC0.77□□□□□ -2.29
MSH3P20585 RMST_2.1-201ENST00000617263 136 ntBASIC0.77□□□□□ -2.29
MSH3P20585 AL589743.1-201ENST00000551932 2712 ntBASIC0.77□□□□□ -2.29
MSH3P20585 MIR608-201ENST00000384820 100 ntBASIC0.76□□□□□ -2.29
MSH3P20585 MT-TI-201ENST00000387365 69 ntBASIC0.76□□□□□ -2.29
MSH3P20585 MIR938-201ENST00000401216 83 ntBASIC0.76□□□□□ -2.29
MSH3P20585 MIR1263-201ENST00000408324 86 ntBASIC0.76□□□□□ -2.29
MSH3P20585 MIR1287-201ENST00000408492 90 ntBASIC0.76□□□□□ -2.29
MSH3P20585 SNORD93-201ENST00000408813 74 ntBASIC0.76□□□□□ -2.29
MSH3P20585 RNA5SP136-201ENST00000410906 107 ntBASIC0.76□□□□□ -2.29
MSH3P20585 AC004941.2-201ENST00000427009 228 ntBASIC0.76□□□□□ -2.29
MSH3P20585 RPS29P1-201ENST00000465274 159 ntBASIC0.76□□□□□ -2.29
MSH3P20585 RNU6-971P-201ENST00000516920 106 ntBASIC0.76□□□□□ -2.29
MSH3P20585 Y_RNA.224-201ENST00000364308 111 ntBASIC0.75□□□□□ -2.29
MSH3P20585 Y_RNA.226-201ENST00000364337 114 ntBASIC0.75□□□□□ -2.29
MSH3P20585 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.75□□□□□ -2.29
MSH3P20585 MIR520F-201ENST00000384824 87 ntBASIC0.75□□□□□ -2.29
MSH3P20585 MIRLET7F2-201ENST00000385277 83 ntBASIC0.75□□□□□ -2.29
MSH3P20585 RPL39P25-201ENST00000449384 154 ntBASIC0.75□□□□□ -2.29
MSH3P20585 RNU7-156P-201ENST00000517214 74 ntBASIC0.75□□□□□ -2.29
MSH3P20585 HSBP1P2-201ENST00000299671 229 ntBASIC0.74□□□□□ -2.29
MSH3P20585 Y_RNA.198-201ENST00000364013 98 ntBASIC0.74□□□□□ -2.29
MSH3P20585 MIR605-201ENST00000385078 83 ntBASIC0.74□□□□□ -2.29
MSH3P20585 Y_RNA.588-201ENST00000391254 102 ntBASIC0.74□□□□□ -2.29
MSH3P20585 PSMC1P5-201ENST00000512850 177 ntBASIC0.74□□□□□ -2.29
MSH3P20585 RNU6-1061P-201ENST00000516530 99 ntBASIC0.74□□□□□ -2.29
MSH3P20585 SNORD67.1-201ENST00000516618 108 ntBASIC0.74□□□□□ -2.29
MSH3P20585 RNU7-137P-201ENST00000516788 62 ntBASIC0.74□□□□□ -2.29
MSH3P20585 SNORD92-201ENST00000585078 85 ntBASIC0.74□□□□□ -2.29
MSH3P20585 AL359881.1-201ENST00000602916 267 ntBASIC0.74□□□□□ -2.29
MSH3P20585 AL353765.1-201ENST00000605514 183 ntBASIC0.74□□□□□ -2.29
MSH3P20585 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.73□□□□□ -2.29
MSH3P20585 SNORD114-10-201ENST00000363409 72 ntBASIC0.73□□□□□ -2.29
MSH3P20585 SNORD58C-201ENST00000365223 64 ntBASIC0.73□□□□□ -2.29
MSH3P20585 RNU6-80P-201ENST00000384195 107 ntBASIC0.73□□□□□ -2.29
MSH3P20585 RNU6-364P-201ENST00000384387 107 ntBASIC0.73□□□□□ -2.29
MSH3P20585 MIR520H-201ENST00000385126 88 ntBASIC0.73□□□□□ -2.29
MSH3P20585 SNORD99-201ENST00000408612 74 ntBASIC0.73□□□□□ -2.29
MSH3P20585 RNU6-447P-201ENST00000410293 104 ntBASIC0.73□□□□□ -2.29
MSH3P20585 RNU6-1118P-201ENST00000410382 104 ntBASIC0.73□□□□□ -2.29
MSH3P20585 RNU6-1076P-201ENST00000410397 104 ntBASIC0.73□□□□□ -2.29
MSH3P20585 RNU6-355P-201ENST00000410427 104 ntBASIC0.73□□□□□ -2.29
MSH3P20585 RNU6-791P-201ENST00000410467 104 ntBASIC0.73□□□□□ -2.29
MSH3P20585 RNU6-705P-201ENST00000410601 104 ntBASIC0.73□□□□□ -2.29
MSH3P20585 RNU6-1100P-201ENST00000410691 104 ntBASIC0.73□□□□□ -2.29
MSH3P20585 RNU6-860P-201ENST00000410860 104 ntBASIC0.73□□□□□ -2.29
MSH3P20585 RNU4-83P-201ENST00000410863 133 ntBASIC0.73□□□□□ -2.29
MSH3P20585 RNU6-1217P-201ENST00000411276 104 ntBASIC0.73□□□□□ -2.29
MSH3P20585 RNU6-785P-201ENST00000411324 104 ntBASIC0.73□□□□□ -2.29
MSH3P20585 COX6CP6-201ENST00000490840 228 ntBASIC0.73□□□□□ -2.29
MSH3P20585 MIR4491-201ENST00000581087 68 ntBASIC0.73□□□□□ -2.29
MSH3P20585 AL078603.1-201ENST00000603824 313 ntBASIC0.73□□□□□ -2.29
MSH3P20585 U6.90-201ENST00000614007 104 ntBASIC0.73□□□□□ -2.29
MSH3P20585 MIR8066-201ENST00000617280 78 ntBASIC0.73□□□□□ -2.29
MSH3P20585 U6.70-201ENST00000620287 104 ntBASIC0.73□□□□□ -2.29
MSH3P20585 MIR6835-201ENST00000621552 64 ntBASIC0.73□□□□□ -2.29
MSH3P20585 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.72□□□□□ -2.29
MSH3P20585 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.72□□□□□ -2.29
MSH3P20585 Y_RNA.528-201ENST00000384575 108 ntBASIC0.72□□□□□ -2.29
MSH3P20585 SNORD77B-201ENST00000391112 67 ntBASIC0.72□□□□□ -2.29
MSH3P20585 RNU1-119P-201ENST00000391122 165 ntBASIC0.72□□□□□ -2.29
MSH3P20585 AL606490.4-201ENST00000423117 127 ntBASIC0.72□□□□□ -2.29
MSH3P20585 RNU7-102P-201ENST00000458948 62 ntBASIC0.72□□□□□ -2.29
MSH3P20585 RNU7-107P-201ENST00000459121 61 ntBASIC0.72□□□□□ -2.29
MSH3P20585 CYP3A137P-201ENST00000562436 69 ntBASIC0.72□□□□□ -2.29
MSH3P20585 AC008608.1-201ENST00000603910 127 ntBASIC0.72□□□□□ -2.29
MSH3P20585 AC025166.1-201ENST00000612411 163 ntBASIC0.72□□□□□ -2.29
MSH3P20585 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.72□□□□□ -2.29
MSH3P20585 AC087741.2-201ENST00000619415 172 ntBASIC0.72□□□□□ -2.29
MSH3P20585 Y_RNA.213-201ENST00000364178 111 ntBASIC0.71□□□□□ -2.3
MSH3P20585 Y_RNA.218-201ENST00000364218 104 ntBASIC0.71□□□□□ -2.3
MSH3P20585 AL603908.1-201ENST00000406098 201 ntBASIC0.71□□□□□ -2.3
MSH3P20585 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.71□□□□□ -2.3
MSH3P20585 TMSB4XP3-201ENST00000445144 114 ntBASIC0.71□□□□□ -2.3
MSH3P20585 RNU6-772P-201ENST00000516042 105 ntBASIC0.71□□□□□ -2.3
MSH3P20585 RNU7-6P-201ENST00000516845 62 ntBASIC0.71□□□□□ -2.3
MSH3P20585 RNU6-1234P-201ENST00000516877 103 ntBASIC0.71□□□□□ -2.3
MSH3P20585 MIR3163-201ENST00000581592 73 ntBASIC0.71□□□□□ -2.3
MSH3P20585 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.71□□□□□ -2.3
MSH3P20585 MTND5P18-201ENST00000445624 1801 ntBASIC0.71□□□□□ -2.3
MSH3P20585 Y_RNA.42-201ENST00000362660 108 ntBASIC0.7□□□□□ -2.3
MSH3P20585 Y_RNA.71-201ENST00000362892 104 ntBASIC0.7□□□□□ -2.3
MSH3P20585 RNU6-403P-201ENST00000363163 104 ntBASIC0.7□□□□□ -2.3
MSH3P20585 RNU6-81P-201ENST00000365608 104 ntBASIC0.7□□□□□ -2.3
MSH3P20585 MIR759-201ENST00000390224 91 ntBASIC0.7□□□□□ -2.3
MSH3P20585 Y_RNA.630-201ENST00000411370 108 ntBASIC0.7□□□□□ -2.3
MSH3P20585 AC244098.3-201ENST00000424803 96 ntBASIC0.7□□□□□ -2.3
MSH3P20585 Y_RNA.712-201ENST00000517011 92 ntBASIC0.7□□□□□ -2.3
MSH3P20585 AC090897.1-201ENST00000580909 226 ntBASIC0.7□□□□□ -2.3
MSH3P20585 MIR6082-201ENST00000613604 109 ntBASIC0.7□□□□□ -2.3
MSH3P20585 MIR6788-201ENST00000618842 66 ntBASIC0.7□□□□□ -2.3
MSH3P20585 Y_RNA.13-201ENST00000362403 112 ntBASIC0.69□□□□□ -2.3
MSH3P20585 RNU6-616P-201ENST00000384353 107 ntBASIC0.69□□□□□ -2.3
MSH3P20585 MIR573-201ENST00000384964 99 ntBASIC0.69□□□□□ -2.3
MSH3P20585 MIR518E-201ENST00000385252 88 ntBASIC0.69□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 170.6 ms