Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AC012493.3-201ENST00000604494 112 ntBASIC1.48□□□□□ -2.17
HOXA3O43365 MIR8081-201ENST00000611533 95 ntBASIC1.48□□□□□ -2.17
HOXA3O43365 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC1.48□□□□□ -2.17
HOXA3O43365 U6.90-201ENST00000614007 104 ntBASIC1.48□□□□□ -2.17
HOXA3O43365 U6.70-201ENST00000620287 104 ntBASIC1.48□□□□□ -2.17
HOXA3O43365 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.48□□□□□ -2.17
HOXA3O43365 MIR30D-201ENST00000362283 70 ntBASIC1.47□□□□□ -2.17
HOXA3O43365 Y_RNA.4-201ENST00000362333 112 ntBASIC1.47□□□□□ -2.17
HOXA3O43365 Y_RNA.98-201ENST00000363109 102 ntBASIC1.47□□□□□ -2.17
HOXA3O43365 RNU6-865P-201ENST00000364772 107 ntBASIC1.47□□□□□ -2.17
HOXA3O43365 RNU6-580P-201ENST00000365159 107 ntBASIC1.47□□□□□ -2.17
HOXA3O43365 MIR34C-201ENST00000384831 77 ntBASIC1.47□□□□□ -2.17
HOXA3O43365 RNU6ATAC41P-201ENST00000408600 126 ntBASIC1.47□□□□□ -2.17
HOXA3O43365 SNORD13-201ENST00000459299 104 ntBASIC1.47□□□□□ -2.17
HOXA3O43365 MIR5582-201ENST00000579697 68 ntBASIC1.47□□□□□ -2.17
HOXA3O43365 AC096720.1-201ENST00000604441 183 ntBASIC1.47□□□□□ -2.17
HOXA3O43365 SEPT14P17-201ENST00000617978 177 ntBASIC1.47□□□□□ -2.17
HOXA3O43365 MIR2052-201ENST00000636055 55 ntBASIC1.47□□□□□ -2.17
HOXA3O43365 MIR377-201ENST00000362145 69 ntBASIC1.46□□□□□ -2.18
HOXA3O43365 Y_RNA.107-201ENST00000363190 121 ntBASIC1.46□□□□□ -2.18
HOXA3O43365 MIR9-3-201ENST00000385084 90 ntBASIC1.46□□□□□ -2.18
HOXA3O43365 AC108667.1-201ENST00000428618 249 ntBASIC1.46□□□□□ -2.18
HOXA3O43365 RNU7-48P-201ENST00000458875 63 ntBASIC1.46□□□□□ -2.18
HOXA3O43365 RNU6-795P-201ENST00000516323 103 ntBASIC1.46□□□□□ -2.18
HOXA3O43365 RNU6-158P-201ENST00000517104 100 ntBASIC1.46□□□□□ -2.18
HOXA3O43365 MIR3122-201ENST00000577243 73 ntBASIC1.46□□□□□ -2.18
HOXA3O43365 SNORA4-201ENST00000584302 138 ntBASIC1.46□□□□□ -2.18
HOXA3O43365 MIR376B-201ENST00000614515 100 ntBASIC1.46□□□□□ -2.18
HOXA3O43365 AC012531.4-201ENST00000616509 177 ntBASIC1.46□□□□□ -2.18
HOXA3O43365 Y_RNA.247-201ENST00000364500 92 ntBASIC1.45□□□□□ -2.18
HOXA3O43365 SNORD45B-201ENST00000364617 72 ntBASIC1.45□□□□□ -2.18
HOXA3O43365 Y_RNA.330-201ENST00000365230 109 ntBASIC1.45□□□□□ -2.18
HOXA3O43365 RPS29P28-201ENST00000446439 141 ntBASIC1.45□□□□□ -2.18
HOXA3O43365 RPS29P11-201ENST00000496507 171 ntBASIC1.45□□□□□ -2.18
HOXA3O43365 RNU6-1053P-201ENST00000515930 101 ntBASIC1.45□□□□□ -2.18
HOXA3O43365 Y_RNA.659-201ENST00000515994 113 ntBASIC1.45□□□□□ -2.18
HOXA3O43365 SNORA31.2-201ENST00000516019 134 ntBASIC1.45□□□□□ -2.18
HOXA3O43365 RNU6-1006P-201ENST00000516998 103 ntBASIC1.45□□□□□ -2.18
HOXA3O43365 AC133485.1-201ENST00000567176 124 ntBASIC1.45□□□□□ -2.18
HOXA3O43365 uc_338.6-201ENST00000613544 171 ntBASIC1.45□□□□□ -2.18
HOXA3O43365 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC1.45□□□□□ -2.18
HOXA3O43365 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.44□□□□□ -2.18
HOXA3O43365 MIR337-201ENST00000362281 93 ntBASIC1.44□□□□□ -2.18
HOXA3O43365 RNU6-170P-201ENST00000362832 104 ntBASIC1.44□□□□□ -2.18
HOXA3O43365 Y_RNA.466-201ENST00000384294 113 ntBASIC1.44□□□□□ -2.18
HOXA3O43365 U8.15-201ENST00000390947 134 ntBASIC1.44□□□□□ -2.18
HOXA3O43365 MIR548Z-201ENST00000584743 97 ntBASIC1.44□□□□□ -2.18
HOXA3O43365 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.44□□□□□ -2.18
HOXA3O43365 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.43□□□□□ -2.18
HOXA3O43365 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
HOXA3O43365 Y_RNA.168-201ENST00000363740 102 ntBASIC1.43□□□□□ -2.18
HOXA3O43365 SNORD38.1-201ENST00000363863 68 ntBASIC1.43□□□□□ -2.18
HOXA3O43365 SNORA16.1-201ENST00000364597 132 ntBASIC1.43□□□□□ -2.18
HOXA3O43365 Y_RNA.363-201ENST00000365529 113 ntBASIC1.43□□□□□ -2.18
HOXA3O43365 Y_RNA.369-201ENST00000365568 117 ntBASIC1.43□□□□□ -2.18
HOXA3O43365 SNORA2B-201ENST00000384583 137 ntBASIC1.43□□□□□ -2.18
HOXA3O43365 SNORA17.3-201ENST00000391159 129 ntBASIC1.43□□□□□ -2.18
HOXA3O43365 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.43□□□□□ -2.18
HOXA3O43365 MIR4777-201ENST00000583710 86 ntBASIC1.43□□□□□ -2.18
HOXA3O43365 MIR502-201ENST00000606349 86 ntBASIC1.43□□□□□ -2.18
HOXA3O43365 AC091304.10-201ENST00000641554 121 ntBASIC1.43□□□□□ -2.18
HOXA3O43365 Y_RNA.95-201ENST00000363079 95 ntBASIC1.42□□□□□ -2.18
HOXA3O43365 SNORD113.3-201ENST00000364630 78 ntBASIC1.42□□□□□ -2.18
HOXA3O43365 RNU6-60P-201ENST00000364792 103 ntBASIC1.42□□□□□ -2.18
HOXA3O43365 MIR488-201ENST00000365739 83 ntBASIC1.42□□□□□ -2.18
HOXA3O43365 MT-TF-201ENST00000387314 71 ntBASIC1.42□□□□□ -2.18
HOXA3O43365 SNORA75.2-201ENST00000391138 150 ntBASIC1.42□□□□□ -2.18
HOXA3O43365 RNU6-644P-201ENST00000391155 98 ntBASIC1.42□□□□□ -2.18
HOXA3O43365 SNORA75.3-201ENST00000391231 150 ntBASIC1.42□□□□□ -2.18
HOXA3O43365 AC096949.1-201ENST00000412047 152 ntBASIC1.42□□□□□ -2.18
HOXA3O43365 AC004941.2-201ENST00000427009 228 ntBASIC1.42□□□□□ -2.18
HOXA3O43365 AC109327.2-201ENST00000448339 378 ntBASIC1.42□□□□□ -2.18
HOXA3O43365 MIR18B-201ENST00000454574 71 ntBASIC1.42□□□□□ -2.18
HOXA3O43365 MIR4498-201ENST00000577599 66 ntBASIC1.42□□□□□ -2.18
HOXA3O43365 AP001362.1-201ENST00000625165 124 ntBASIC1.42□□□□□ -2.18
HOXA3O43365 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.42□□□□□ -2.18
HOXA3O43365 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
HOXA3O43365 MIR378A-201ENST00000362177 66 ntBASIC1.41□□□□□ -2.18
HOXA3O43365 Y_RNA.226-201ENST00000364337 114 ntBASIC1.41□□□□□ -2.18
HOXA3O43365 RNY1P2-201ENST00000364820 117 ntBASIC1.41□□□□□ -2.18
HOXA3O43365 RNU6-1131P-201ENST00000364955 107 ntBASIC1.41□□□□□ -2.18
HOXA3O43365 MIR4285-201ENST00000581001 85 ntBASIC1.41□□□□□ -2.18
HOXA3O43365 Y_RNA.467-201ENST00000384297 102 ntBASIC1.4□□□□□ -2.19
HOXA3O43365 RNU6-910P-201ENST00000390844 107 ntBASIC1.4□□□□□ -2.19
HOXA3O43365 MIR1287-201ENST00000408492 90 ntBASIC1.4□□□□□ -2.19
HOXA3O43365 MRPL35P3-201ENST00000421557 364 ntBASIC1.4□□□□□ -2.19
HOXA3O43365 RNU7-61P-201ENST00000515897 61 ntBASIC1.4□□□□□ -2.19
HOXA3O43365 AC036111.3-201ENST00000526389 112 ntBASIC1.4□□□□□ -2.19
HOXA3O43365 MIR4439-201ENST00000583746 80 ntBASIC1.4□□□□□ -2.19
HOXA3O43365 AC006254.2-201ENST00000603259 279 ntBASIC1.4□□□□□ -2.19
HOXA3O43365 RNU6-90P-201ENST00000606352 106 ntBASIC1.4□□□□□ -2.19
HOXA3O43365 AC012676.2-201ENST00000619258 186 ntBASIC1.4□□□□□ -2.19
HOXA3O43365 RNU6-1163P-201ENST00000364516 107 ntBASIC1.39□□□□□ -2.19
HOXA3O43365 RNU6-49P-201ENST00000384256 107 ntBASIC1.39□□□□□ -2.19
HOXA3O43365 SNORD38.2-201ENST00000384470 69 ntBASIC1.39□□□□□ -2.19
HOXA3O43365 MIR548G-201ENST00000408442 89 ntBASIC1.39□□□□□ -2.19
HOXA3O43365 AL591704.2-201ENST00000421658 181 ntBASIC1.39□□□□□ -2.19
HOXA3O43365 SPINT5P-201ENST00000448174 155 ntBASIC1.39□□□□□ -2.19
HOXA3O43365 snoU13.21-201ENST00000459368 105 ntBASIC1.39□□□□□ -2.19
HOXA3O43365 MTND5P40-201ENST00000559945 246 ntBASIC1.39□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 236.4 ms