Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 SNORA74.3-201ENST00000517108 154 ntBASIC2.78□□□□□ -1.96
SENP3-EIF4A1A0A087X0R7 MIRLET7G-201ENST00000362280 84 ntBASIC2.77□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 RNA5SP190-201ENST00000365222 118 ntBASIC2.77□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 AC003989.2-201ENST00000440224 169 ntBASIC2.77□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 RNU7-43P-201ENST00000516554 64 ntBASIC2.77□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 SCARNA16.3-201ENST00000516595 184 ntBASIC2.77□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 RNU2-7P-201ENST00000410794 178 ntBASIC2.76□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 BX510359.4-201ENST00000423750 193 ntBASIC2.76□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 RNU6-717P-201ENST00000459076 104 ntBASIC2.76□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 RNU6-917P-201ENST00000516294 104 ntBASIC2.76□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 AC008133.2-201ENST00000624540 351 ntBASIC2.76□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 SNORA63.2-201ENST00000362603 126 ntBASIC2.75□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 RNY1P13-201ENST00000365030 105 ntBASIC2.75□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 MIR520A-201ENST00000384862 85 ntBASIC2.75□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 FGF7P7-201ENST00000514120 227 ntBASIC2.75□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.75□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 MIR4709-201ENST00000577272 72 ntBASIC2.75□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 MIR3134-201ENST00000579433 74 ntBASIC2.75□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 AC021506.2-201ENST00000612354 169 ntBASIC2.75□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 RNU6-1237P-201ENST00000384777 107 ntBASIC2.74□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 RNA5SP237-201ENST00000410414 113 ntBASIC2.74□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 SCARNA18B-201ENST00000458806 135 ntBASIC2.74□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 MIR5089-201ENST00000580047 84 ntBASIC2.74□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 MIR4796-201ENST00000580742 81 ntBASIC2.74□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 RNY1P2-201ENST00000364820 117 ntBASIC2.73□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 Y_RNA.340-201ENST00000365330 92 ntBASIC2.73□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.73□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.73□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.73□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.72□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 SNORD38B-201ENST00000384690 67 ntBASIC2.72□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 MIR627-201ENST00000384979 97 ntBASIC2.72□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 RNU11-3P-201ENST00000391111 133 ntBASIC2.72□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.72□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 AC019129.1-201ENST00000403786 261 ntBASIC2.72□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 Y_RNA.648-201ENST00000459455 110 ntBASIC2.72□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 SNORD38B-202ENST00000625943 69 ntBASIC2.72□□□□□ -1.97
SENP3-EIF4A1A0A087X0R7 RNU6-392P-201ENST00000364926 101 ntBASIC2.71□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 SNORD114-22-201ENST00000365423 72 ntBASIC2.71□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 HMGN2P35-201ENST00000412164 270 ntBASIC2.71□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 SNRPGP12-201ENST00000449481 213 ntBASIC2.71□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 RNU6-807P-201ENST00000516805 107 ntBASIC2.71□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 RNA5SP481-201ENST00000516814 122 ntBASIC2.71□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 AC141846.1-201ENST00000568348 142 ntBASIC2.71□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 MIR3126-201ENST00000577443 74 ntBASIC2.71□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 MIR4764-201ENST00000580680 88 ntBASIC2.71□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.71□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC2.71□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.71□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 MIR597-201ENST00000384968 97 ntBASIC2.7□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC2.7□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 AC027119.1-201ENST00000440877 241 ntBASIC2.7□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 RNU7-85P-201ENST00000458851 63 ntBASIC2.7□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 snoU13.27-201ENST00000459278 104 ntBASIC2.7□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 Y_RNA.681-201ENST00000516445 113 ntBASIC2.7□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 RNA5SP102-201ENST00000516865 106 ntBASIC2.7□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 RNU6-1015P-201ENST00000517121 99 ntBASIC2.7□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 MIR6895-201ENST00000613497 78 ntBASIC2.7□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.7□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 MIR1297-201ENST00000637311 77 ntBASIC2.7□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.69□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.69□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 MIR424-201ENST00000362227 98 ntBASIC2.69□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 RNU6-161P-201ENST00000363051 106 ntBASIC2.69□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 SNORA38-201ENST00000363946 132 ntBASIC2.69□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 RNA5SP200-201ENST00000516360 103 ntBASIC2.69□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 RNU6-448P-201ENST00000517052 107 ntBASIC2.69□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 RNA5SP437-201ENST00000517249 129 ntBASIC2.69□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 AC090897.1-201ENST00000580909 226 ntBASIC2.69□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.69□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.69□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC2.69□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 RNU6-811P-201ENST00000384069 107 ntBASIC2.68□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 SNORA72.6-201ENST00000384520 129 ntBASIC2.68□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 MIR520C-201ENST00000385005 87 ntBASIC2.68□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 RPS27P21-201ENST00000486977 252 ntBASIC2.68□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC2.68□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 AC022202.1-201ENST00000613515 211 ntBASIC2.68□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 AL662814.1-201ENST00000617364 121 ntBASIC2.68□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.67□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 VTRNA1-1-201ENST00000363120 99 ntBASIC2.67□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 Y_RNA.264-201ENST00000364665 102 ntBASIC2.67□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 RNU6-949P-201ENST00000384040 107 ntBASIC2.67□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 RNU6-571P-201ENST00000384128 107 ntBASIC2.67□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 RNA5SP465-201ENST00000391195 109 ntBASIC2.67□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 AC099513.1-201ENST00000490423 301 ntBASIC2.67□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 RNU6-1108P-201ENST00000516308 104 ntBASIC2.67□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 RNU6-850P-201ENST00000516934 103 ntBASIC2.67□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 MIR4446-201ENST00000578505 67 ntBASIC2.67□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 MIR548AO-201ENST00000579992 96 ntBASIC2.67□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 RNU4-83P-201ENST00000410863 133 ntBASIC2.66□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 AC004965.1-201ENST00000413033 213 ntBASIC2.66□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 RNU6-70P-201ENST00000516438 60 ntBASIC2.66□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 MIR4500-201ENST00000579472 76 ntBASIC2.66□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 168.4 ms