| S4R3C0 | MIR6082-201 | ENST00000613604 | 109 nt | BASIC | 0.18 | □□□□□ -2.38 | | |
| S4R3C0 | Y_RNA.32-201 | ENST00000362589 | 110 nt | BASIC | 0.17 | □□□□□ -2.38 | | |
| S4R3C0 | SNORA36.1-201 | ENST00000363424 | 132 nt | BASIC | 0.17 | □□□□□ -2.38 | | |
| S4R3C0 | Y_RNA.562-201 | ENST00000384695 | 113 nt | BASIC | 0.17 | □□□□□ -2.38 | | |
| S4R3C0 | MIR624-201 | ENST00000385217 | 97 nt | BASIC | 0.17 | □□□□□ -2.38 | | |
| S4R3C0 | AC096949.1-201 | ENST00000412047 | 152 nt | BASIC | 0.17 | □□□□□ -2.38 | | |
| S4R3C0 | MTND1P19-201 | ENST00000511780 | 315 nt | BASIC | 0.17 | □□□□□ -2.38 | | |
| S4R3C0 | AP003327.1-201 | ENST00000529684 | 127 nt | BASIC | 0.17 | □□□□□ -2.38 | | |
| S4R3C0 | MIR4491-201 | ENST00000581087 | 68 nt | BASIC | 0.17 | □□□□□ -2.38 | | |
| S4R3C0 | MTND5P32-201 | ENST00000560711 | 1802 nt | BASIC | 0.17 | □□□□□ -2.38 | | |
| S4R3C0 | DEFB131A-201 | ENST00000334879 | 213 nt | APPRIS P1 TSL 1 (best) BASIC | 0.16 | □□□□□ -2.38 | | |
| S4R3C0 | AC090625.1-201 | ENST00000357130 | 210 nt | BASIC | 0.16 | □□□□□ -2.38 | | |
| S4R3C0 | MIR330-201 | ENST00000362196 | 94 nt | BASIC | 0.16 | □□□□□ -2.38 | | |
| S4R3C0 | Y_RNA.121-201 | ENST00000363309 | 113 nt | BASIC | 0.16 | □□□□□ -2.38 | | |
| S4R3C0 | RNA5SP62-201 | ENST00000363457 | 110 nt | BASIC | 0.16 | □□□□□ -2.38 | | |
| S4R3C0 | SNORD118-201 | ENST00000363593 | 134 nt | BASIC | 0.16 | □□□□□ -2.38 | | |
| S4R3C0 | Y_RNA.171-201 | ENST00000363760 | 102 nt | BASIC | 0.16 | □□□□□ -2.38 | | |
| S4R3C0 | RNU6-949P-201 | ENST00000384040 | 107 nt | BASIC | 0.16 | □□□□□ -2.38 | | |
| S4R3C0 | RNU4-70P-201 | ENST00000384579 | 139 nt | BASIC | 0.16 | □□□□□ -2.38 | | |
| S4R3C0 | Y_RNA.539-201 | ENST00000384635 | 107 nt | BASIC | 0.16 | □□□□□ -2.38 | | |
| S4R3C0 | RNU6-1011P-201 | ENST00000384668 | 107 nt | BASIC | 0.16 | □□□□□ -2.38 | | |
| S4R3C0 | Y_RNA.626-201 | ENST00000411288 | 95 nt | BASIC | 0.16 | □□□□□ -2.38 | | |
| S4R3C0 | AL512326.2-201 | ENST00000426359 | 151 nt | BASIC | 0.16 | □□□□□ -2.38 | | |
| S4R3C0 | AC108740.1-201 | ENST00000498629 | 225 nt | BASIC | 0.16 | □□□□□ -2.38 | | |
| S4R3C0 | RNU6-1258P-201 | ENST00000516911 | 111 nt | BASIC | 0.16 | □□□□□ -2.38 | | |
| S4R3C0 | HOTAIR_3.1-201 | ENST00000611352 | 97 nt | BASIC | 0.16 | □□□□□ -2.38 | | |
| S4R3C0 | MIR8087-201 | ENST00000612745 | 78 nt | BASIC | 0.16 | □□□□□ -2.38 | | |
| S4R3C0 | CLRN1-AS1.1-201 | ENST00000615643 | 79 nt | BASIC | 0.16 | □□□□□ -2.38 | | |
| S4R3C0 | NEAT1_2.1-201 | ENST00000620525 | 105 nt | BASIC | 0.16 | □□□□□ -2.38 | | |
| S4R3C0 | VPS35-212 | ENST00000640313 | 141 nt | TSL 5 BASIC | 0.16 | □□□□□ -2.38 | | |
| S4R3C0 | RNY1P13-201 | ENST00000365030 | 105 nt | BASIC | 0.15 | □□□□□ -2.39 | | |
| S4R3C0 | RNU6-1327P-201 | ENST00000365302 | 105 nt | BASIC | 0.15 | □□□□□ -2.39 | | |
| S4R3C0 | RNU6ATAC4P-201 | ENST00000387446 | 126 nt | BASIC | 0.15 | □□□□□ -2.39 | | |
| S4R3C0 | MTCYBP9-201 | ENST00000431021 | 303 nt | BASIC | 0.15 | □□□□□ -2.39 | | |
| S4R3C0 | SNORA31.14-201 | ENST00000516728 | 116 nt | BASIC | 0.15 | □□□□□ -2.39 | | |
| S4R3C0 | SNORA25.16-201 | ENST00000516741 | 121 nt | BASIC | 0.15 | □□□□□ -2.39 | | |
| S4R3C0 | DEFB131B-201 | ENST00000530210 | 213 nt | APPRIS P1 TSL 1 (best) BASIC | 0.15 | □□□□□ -2.39 | | |
| S4R3C0 | MTND5P34-201 | ENST00000568888 | 325 nt | BASIC | 0.15 | □□□□□ -2.39 | | |
| S4R3C0 | Y_RNA.757-201 | ENST00000578934 | 114 nt | BASIC | 0.15 | □□□□□ -2.39 | | |
| S4R3C0 | MIR5093-201 | ENST00000583199 | 100 nt | BASIC | 0.15 | □□□□□ -2.39 | | |
| S4R3C0 | RNU6-694P-201 | ENST00000364071 | 147 nt | BASIC | 0.14 | □□□□□ -2.39 | | |
| S4R3C0 | SNORA25.7-201 | ENST00000364375 | 127 nt | BASIC | 0.14 | □□□□□ -2.39 | | |
| S4R3C0 | RNU6-275P-201 | ENST00000364910 | 107 nt | BASIC | 0.14 | □□□□□ -2.39 | | |
| S4R3C0 | Y_RNA.412-201 | ENST00000384001 | 104 nt | BASIC | 0.14 | □□□□□ -2.39 | | |
| S4R3C0 | RNY1P6-201 | ENST00000384193 | 109 nt | BASIC | 0.14 | □□□□□ -2.39 | | |
| S4R3C0 | Y_RNA.515-201 | ENST00000384535 | 112 nt | BASIC | 0.14 | □□□□□ -2.39 | | |
| S4R3C0 | MIR568-201 | ENST00000385036 | 95 nt | BASIC | 0.14 | □□□□□ -2.39 | | |
| S4R3C0 | AC073261.1-201 | ENST00000429409 | 121 nt | BASIC | 0.14 | □□□□□ -2.39 | | |
| S4R3C0 | AC103879.1-201 | ENST00000503093 | 255 nt | TSL 2 BASIC | 0.14 | □□□□□ -2.39 | | |
| S4R3C0 | Y_RNA.668-201 | ENST00000516233 | 93 nt | BASIC | 0.14 | □□□□□ -2.39 | | |
| S4R3C0 | Y_RNA.697-201 | ENST00000516776 | 113 nt | BASIC | 0.14 | □□□□□ -2.39 | | |
| S4R3C0 | RNU6-765P-201 | ENST00000516916 | 99 nt | BASIC | 0.14 | □□□□□ -2.39 | | |
| S4R3C0 | MRPS18CP4-201 | ENST00000535821 | 231 nt | BASIC | 0.14 | □□□□□ -2.39 | | |
| S4R3C0 | MIR4514-201 | ENST00000581410 | 57 nt | BASIC | 0.14 | □□□□□ -2.39 | | |
| S4R3C0 | AC023932.2-201 | ENST00000603176 | 175 nt | BASIC | 0.14 | □□□□□ -2.39 | | |
| S4R3C0 | U6.106-201 | ENST00000636360 | 105 nt | BASIC | 0.14 | □□□□□ -2.39 | | |
| S4R3C0 | Y_RNA.20-201 | ENST00000362479 | 113 nt | BASIC | 0.13 | □□□□□ -2.39 | | |
| S4R3C0 | Y_RNA.133-201 | ENST00000363428 | 110 nt | BASIC | 0.13 | □□□□□ -2.39 | | |
| S4R3C0 | Y_RNA.350-201 | ENST00000365409 | 98 nt | BASIC | 0.13 | □□□□□ -2.39 | | |
| S4R3C0 | RNU6-716P-201 | ENST00000365621 | 103 nt | BASIC | 0.13 | □□□□□ -2.39 | | |
| S4R3C0 | Y_RNA.521-201 | ENST00000384560 | 114 nt | BASIC | 0.13 | □□□□□ -2.39 | | |
| S4R3C0 | RNU6-291P-201 | ENST00000384720 | 107 nt | BASIC | 0.13 | □□□□□ -2.39 | | |
| S4R3C0 | RNU6-535P-201 | ENST00000384722 | 107 nt | BASIC | 0.13 | □□□□□ -2.39 | | |
| S4R3C0 | RNA5SP144-201 | ENST00000410846 | 116 nt | BASIC | 0.13 | □□□□□ -2.39 | | |
| S4R3C0 | RNU6-1086P-201 | ENST00000410930 | 100 nt | BASIC | 0.13 | □□□□□ -2.39 | | |
| S4R3C0 | RNU5E-9P-201 | ENST00000411164 | 104 nt | BASIC | 0.13 | □□□□□ -2.39 | | |
| S4R3C0 | SUMO1P3-201 | ENST00000439961 | 304 nt | BASIC | 0.13 | □□□□□ -2.39 | | |
| S4R3C0 | AC097716.1-201 | ENST00000509136 | 180 nt | TSL 2 BASIC | 0.13 | □□□□□ -2.39 | | |
| S4R3C0 | RNU6-327P-201 | ENST00000516270 | 127 nt | BASIC | 0.13 | □□□□□ -2.39 | | |
| S4R3C0 | Y_RNA.680-201 | ENST00000516441 | 93 nt | BASIC | 0.13 | □□□□□ -2.39 | | |
| S4R3C0 | RNA5SP268-201 | ENST00000516828 | 124 nt | BASIC | 0.13 | □□□□□ -2.39 | | |
| S4R3C0 | MIR4431-201 | ENST00000579990 | 94 nt | BASIC | 0.13 | □□□□□ -2.39 | | |
| S4R3C0 | MIR3128-201 | ENST00000581957 | 66 nt | BASIC | 0.13 | □□□□□ -2.39 | | |
| S4R3C0 | AC078938.1-201 | ENST00000620993 | 318 nt | BASIC | 0.13 | □□□□□ -2.39 | | |
| S4R3C0 | Y_RNA.52-201 | ENST00000362760 | 96 nt | BASIC | 0.12 | □□□□□ -2.39 | | |
| S4R3C0 | Y_RNA.60-201 | ENST00000362831 | 98 nt | BASIC | 0.12 | □□□□□ -2.39 | | |
| S4R3C0 | RNU6-815P-201 | ENST00000384080 | 113 nt | BASIC | 0.12 | □□□□□ -2.39 | | |
| S4R3C0 | Y_RNA.470-201 | ENST00000384307 | 117 nt | BASIC | 0.12 | □□□□□ -2.39 | | |
| S4R3C0 | Y_RNA.536-201 | ENST00000384621 | 113 nt | BASIC | 0.12 | □□□□□ -2.39 | | |
| S4R3C0 | Y_RNA.556-201 | ENST00000384677 | 113 nt | BASIC | 0.12 | □□□□□ -2.39 | | |
| S4R3C0 | MIR1302-3-201 | ENST00000408128 | 138 nt | BASIC | 0.12 | □□□□□ -2.39 | | |
| S4R3C0 | RNU6-893P-201 | ENST00000458841 | 100 nt | BASIC | 0.12 | □□□□□ -2.39 | | |
| S4R3C0 | RNU7-113P-201 | ENST00000459273 | 62 nt | BASIC | 0.12 | □□□□□ -2.39 | | |
| S4R3C0 | RNU7-79P-201 | ENST00000516082 | 62 nt | BASIC | 0.12 | □□□□□ -2.39 | | |
| S4R3C0 | DEFB131E-201 | ENST00000532329 | 154 nt | BASIC | 0.12 | □□□□□ -2.39 | | |
| S4R3C0 | MIR7107-201 | ENST00000611489 | 80 nt | BASIC | 0.12 | □□□□□ -2.39 | | |
| S4R3C0 | RNU6-349P-201 | ENST00000362402 | 107 nt | BASIC | 0.11 | □□□□□ -2.39 | | |
| S4R3C0 | Y_RNA.85-201 | ENST00000363014 | 111 nt | BASIC | 0.11 | □□□□□ -2.39 | | |
| S4R3C0 | RNA5SP457-201 | ENST00000363657 | 124 nt | BASIC | 0.11 | □□□□□ -2.39 | | |
| S4R3C0 | Y_RNA.174-201 | ENST00000363781 | 105 nt | BASIC | 0.11 | □□□□□ -2.39 | | |
| S4R3C0 | RNU6-1229P-201 | ENST00000364295 | 107 nt | BASIC | 0.11 | □□□□□ -2.39 | | |
| S4R3C0 | RNU4-67P-201 | ENST00000364569 | 141 nt | BASIC | 0.11 | □□□□□ -2.39 | | |
| S4R3C0 | SNORA32-201 | ENST00000384072 | 121 nt | BASIC | 0.11 | □□□□□ -2.39 | | |
| S4R3C0 | SNORD58.1-201 | ENST00000391313 | 66 nt | BASIC | 0.11 | □□□□□ -2.39 | | |
| S4R3C0 | AL118496.2-201 | ENST00000448300 | 230 nt | BASIC | 0.11 | □□□□□ -2.39 | | |
| S4R3C0 | RNU6-1194P-201 | ENST00000516208 | 104 nt | BASIC | 0.11 | □□□□□ -2.39 | | |
| S4R3C0 | RNA5SP330-201 | ENST00000517096 | 96 nt | BASIC | 0.11 | □□□□□ -2.39 | | |
| S4R3C0 | AC079466.2-201 | ENST00000585394 | 185 nt | TSL 5 BASIC | 0.11 | □□□□□ -2.39 | | |
| S4R3C0 | Y_RNA.115-201 | ENST00000363272 | 98 nt | BASIC | 0.1 | □□□□□ -2.39 | | |
| S4R3C0 | Y_RNA.478-201 | ENST00000384358 | 107 nt | BASIC | 0.1 | □□□□□ -2.39 | | |