Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 MIR4503-201ENST00000582187 83 ntBASIC0.47□□□□□ -2.33
PCDHGA1Q9Y5H4 AL662814.1-201ENST00000617364 121 ntBASIC0.47□□□□□ -2.33
PCDHGA1Q9Y5H4 AC090625.1-201ENST00000357130 210 ntBASIC0.46□□□□□ -2.34
PCDHGA1Q9Y5H4 Y_RNA.75-201ENST00000362927 97 ntBASIC0.46□□□□□ -2.34
PCDHGA1Q9Y5H4 Y_RNA.178-201ENST00000363832 102 ntBASIC0.46□□□□□ -2.34
PCDHGA1Q9Y5H4 RNU6-597P-201ENST00000365620 102 ntBASIC0.46□□□□□ -2.34
PCDHGA1Q9Y5H4 AC002350.1-201ENST00000490759 375 ntBASIC0.46□□□□□ -2.34
PCDHGA1Q9Y5H4 MRPS18CP4-201ENST00000535821 231 ntBASIC0.46□□□□□ -2.34
PCDHGA1Q9Y5H4 AL162730.1-201ENST00000605734 292 ntBASIC0.46□□□□□ -2.34
PCDHGA1Q9Y5H4 Y_RNA.60-201ENST00000362831 98 ntBASIC0.45□□□□□ -2.34
PCDHGA1Q9Y5H4 SNORA25.7-201ENST00000364375 127 ntBASIC0.45□□□□□ -2.34
PCDHGA1Q9Y5H4 SNORA20.1-201ENST00000364790 130 ntBASIC0.45□□□□□ -2.34
PCDHGA1Q9Y5H4 RNU6-702P-201ENST00000364982 107 ntBASIC0.45□□□□□ -2.34
PCDHGA1Q9Y5H4 Y_RNA.433-201ENST00000384089 102 ntBASIC0.45□□□□□ -2.34
PCDHGA1Q9Y5H4 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.45□□□□□ -2.34
PCDHGA1Q9Y5H4 SNORD93-201ENST00000408813 74 ntBASIC0.45□□□□□ -2.34
PCDHGA1Q9Y5H4 RNA5SP237-201ENST00000410414 113 ntBASIC0.45□□□□□ -2.34
PCDHGA1Q9Y5H4 RNU6-1149P-201ENST00000516810 97 ntBASIC0.45□□□□□ -2.34
PCDHGA1Q9Y5H4 RNU6-111P-201ENST00000517179 105 ntBASIC0.45□□□□□ -2.34
PCDHGA1Q9Y5H4 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.45□□□□□ -2.34
PCDHGA1Q9Y5H4 SNORA22.1-201ENST00000362701 134 ntBASIC0.44□□□□□ -2.34
PCDHGA1Q9Y5H4 Y_RNA.412-201ENST00000384001 104 ntBASIC0.44□□□□□ -2.34
PCDHGA1Q9Y5H4 Y_RNA.447-201ENST00000384184 113 ntBASIC0.44□□□□□ -2.34
PCDHGA1Q9Y5H4 RNU6-196P-201ENST00000384315 107 ntBASIC0.44□□□□□ -2.34
PCDHGA1Q9Y5H4 RNU6-918P-201ENST00000391219 106 ntBASIC0.44□□□□□ -2.34
PCDHGA1Q9Y5H4 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.44□□□□□ -2.34
PCDHGA1Q9Y5H4 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.44□□□□□ -2.34
PCDHGA1Q9Y5H4 SNORA62.5-201ENST00000516634 120 ntBASIC0.44□□□□□ -2.34
PCDHGA1Q9Y5H4 U6.106-201ENST00000636360 105 ntBASIC0.44□□□□□ -2.34
PCDHGA1Q9Y5H4 Y_RNA.193-201ENST00000363979 102 ntBASIC0.43□□□□□ -2.34
PCDHGA1Q9Y5H4 Y_RNA.435-201ENST00000384095 112 ntBASIC0.43□□□□□ -2.34
PCDHGA1Q9Y5H4 Y_RNA.452-201ENST00000384202 108 ntBASIC0.43□□□□□ -2.34
PCDHGA1Q9Y5H4 RNU6-893P-201ENST00000458841 100 ntBASIC0.43□□□□□ -2.34
PCDHGA1Q9Y5H4 RNU6-448P-201ENST00000517052 107 ntBASIC0.43□□□□□ -2.34
PCDHGA1Q9Y5H4 AC141846.1-201ENST00000568348 142 ntBASIC0.43□□□□□ -2.34
PCDHGA1Q9Y5H4 Y_RNA.307-201ENST00000365022 117 ntBASIC0.42□□□□□ -2.34
PCDHGA1Q9Y5H4 U8.15-201ENST00000390947 134 ntBASIC0.42□□□□□ -2.34
PCDHGA1Q9Y5H4 RNU4-83P-201ENST00000410863 133 ntBASIC0.42□□□□□ -2.34
PCDHGA1Q9Y5H4 SNORA68.3-201ENST00000515906 83 ntBASIC0.42□□□□□ -2.34
PCDHGA1Q9Y5H4 MIR4431-201ENST00000579990 94 ntBASIC0.42□□□□□ -2.34
PCDHGA1Q9Y5H4 MIR8066-201ENST00000617280 78 ntBASIC0.42□□□□□ -2.34
PCDHGA1Q9Y5H4 MTND5P32-201ENST00000560711 1802 ntBASIC0.41□□□□□ -2.34
PCDHGA1Q9Y5H4 Y_RNA.42-201ENST00000362660 108 ntBASIC0.41□□□□□ -2.34
PCDHGA1Q9Y5H4 Y_RNA.200-201ENST00000364018 102 ntBASIC0.41□□□□□ -2.34
PCDHGA1Q9Y5H4 RNA5SP117-201ENST00000365294 118 ntBASIC0.41□□□□□ -2.34
PCDHGA1Q9Y5H4 Y_RNA.515-201ENST00000384535 112 ntBASIC0.41□□□□□ -2.34
PCDHGA1Q9Y5H4 Y_RNA.521-201ENST00000384560 114 ntBASIC0.41□□□□□ -2.34
PCDHGA1Q9Y5H4 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.41□□□□□ -2.34
PCDHGA1Q9Y5H4 RPL39P25-201ENST00000449384 154 ntBASIC0.41□□□□□ -2.34
PCDHGA1Q9Y5H4 MIR3149-201ENST00000584629 83 ntBASIC0.41□□□□□ -2.34
PCDHGA1Q9Y5H4 AC023932.2-201ENST00000603176 175 ntBASIC0.41□□□□□ -2.34
PCDHGA1Q9Y5H4 RNU6-679P-201ENST00000391003 106 ntBASIC0.4□□□□□ -2.35
PCDHGA1Q9Y5H4 RNU5E-9P-201ENST00000411164 104 ntBASIC0.4□□□□□ -2.35
PCDHGA1Q9Y5H4 Y_RNA.757-201ENST00000578934 114 ntBASIC0.4□□□□□ -2.35
PCDHGA1Q9Y5H4 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.4□□□□□ -2.35
PCDHGA1Q9Y5H4 AC092634.7-201ENST00000621022 103 ntBASIC0.4□□□□□ -2.35
PCDHGA1Q9Y5H4 MIR411-201ENST00000362239 96 ntBASIC0.39□□□□□ -2.35
PCDHGA1Q9Y5H4 Y_RNA.83-201ENST00000363005 113 ntBASIC0.39□□□□□ -2.35
PCDHGA1Q9Y5H4 RNU6-312P-201ENST00000364629 107 ntBASIC0.39□□□□□ -2.35
PCDHGA1Q9Y5H4 RNU6-949P-201ENST00000384040 107 ntBASIC0.39□□□□□ -2.35
PCDHGA1Q9Y5H4 RNY1P6-201ENST00000384193 109 ntBASIC0.39□□□□□ -2.35
PCDHGA1Q9Y5H4 RNU6-463P-201ENST00000384340 107 ntBASIC0.39□□□□□ -2.35
PCDHGA1Q9Y5H4 RNU6-1258P-201ENST00000516911 111 ntBASIC0.39□□□□□ -2.35
PCDHGA1Q9Y5H4 MIR3678-201ENST00000578455 94 ntBASIC0.39□□□□□ -2.35
PCDHGA1Q9Y5H4 uc_338.16-201ENST00000621804 95 ntBASIC0.39□□□□□ -2.35
PCDHGA1Q9Y5H4 AC099654.10-201ENST00000640395 161 ntBASIC0.39□□□□□ -2.35
PCDHGA1Q9Y5H4 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.39□□□□□ -2.35
PCDHGA1Q9Y5H4 RNU4-16P-201ENST00000364737 141 ntBASIC0.38□□□□□ -2.35
PCDHGA1Q9Y5H4 RNU6-1336P-201ENST00000383886 109 ntBASIC0.38□□□□□ -2.35
PCDHGA1Q9Y5H4 RNU6-574P-201ENST00000384265 107 ntBASIC0.38□□□□□ -2.35
PCDHGA1Q9Y5H4 SNORA18-201ENST00000384416 132 ntBASIC0.38□□□□□ -2.35
PCDHGA1Q9Y5H4 RNA5SP63-201ENST00000391225 112 ntBASIC0.38□□□□□ -2.35
PCDHGA1Q9Y5H4 Y_RNA.588-201ENST00000391254 102 ntBASIC0.38□□□□□ -2.35
PCDHGA1Q9Y5H4 RNU6-1086P-201ENST00000410930 100 ntBASIC0.38□□□□□ -2.35
PCDHGA1Q9Y5H4 AC096949.1-201ENST00000412047 152 ntBASIC0.38□□□□□ -2.35
PCDHGA1Q9Y5H4 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.38□□□□□ -2.35
PCDHGA1Q9Y5H4 RNA5SP94-201ENST00000516917 108 ntBASIC0.38□□□□□ -2.35
PCDHGA1Q9Y5H4 AP003327.1-201ENST00000529684 127 ntBASIC0.38□□□□□ -2.35
PCDHGA1Q9Y5H4 MIR4491-201ENST00000581087 68 ntBASIC0.38□□□□□ -2.35
PCDHGA1Q9Y5H4 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.38□□□□□ -2.35
PCDHGA1Q9Y5H4 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.38□□□□□ -2.35
PCDHGA1Q9Y5H4 MIR2909-201ENST00000617113 69 ntBASIC0.38□□□□□ -2.35
PCDHGA1Q9Y5H4 RNU6-349P-201ENST00000362402 107 ntBASIC0.37□□□□□ -2.35
PCDHGA1Q9Y5H4 Y_RNA.52-201ENST00000362760 96 ntBASIC0.37□□□□□ -2.35
PCDHGA1Q9Y5H4 RNU6-403P-201ENST00000363163 104 ntBASIC0.37□□□□□ -2.35
PCDHGA1Q9Y5H4 RNA5SP62-201ENST00000363457 110 ntBASIC0.37□□□□□ -2.35
PCDHGA1Q9Y5H4 RNA5SP517-201ENST00000364724 117 ntBASIC0.37□□□□□ -2.35
PCDHGA1Q9Y5H4 RNY1P13-201ENST00000365030 105 ntBASIC0.37□□□□□ -2.35
PCDHGA1Q9Y5H4 RNU6-47P-201ENST00000383866 107 ntBASIC0.37□□□□□ -2.35
PCDHGA1Q9Y5H4 RNA5SP395-201ENST00000516567 118 ntBASIC0.37□□□□□ -2.35
PCDHGA1Q9Y5H4 AC009779.6-201ENST00000603972 165 ntBASIC0.37□□□□□ -2.35
PCDHGA1Q9Y5H4 MIR6082-201ENST00000613604 109 ntBASIC0.37□□□□□ -2.35
PCDHGA1Q9Y5H4 MIRLET7D-201ENST00000362263 87 ntBASIC0.36□□□□□ -2.35
PCDHGA1Q9Y5H4 Y_RNA.13-201ENST00000362403 112 ntBASIC0.36□□□□□ -2.35
PCDHGA1Q9Y5H4 RNU6-1020P-201ENST00000363684 107 ntBASIC0.36□□□□□ -2.35
PCDHGA1Q9Y5H4 RNU6-768P-201ENST00000384683 107 ntBASIC0.36□□□□□ -2.35
PCDHGA1Q9Y5H4 RNA5SP144-201ENST00000410846 116 ntBASIC0.36□□□□□ -2.35
PCDHGA1Q9Y5H4 SNORA40.8-201ENST00000411034 126 ntBASIC0.36□□□□□ -2.35
PCDHGA1Q9Y5H4 RNA5SP236-201ENST00000516169 116 ntBASIC0.36□□□□□ -2.35
PCDHGA1Q9Y5H4 SNORA25.12-201ENST00000516202 82 ntBASIC0.36□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 220.1 ms