Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 MIR520F-201ENST00000384824 87 ntBASIC0.32□□□□□ -2.36
SHANK1Q9Y566 Y_RNA.610-201ENST00000410681 103 ntBASIC0.32□□□□□ -2.36
SHANK1Q9Y566 RNA5SP236-201ENST00000516169 116 ntBASIC0.32□□□□□ -2.36
SHANK1Q9Y566 MRPS18CP4-201ENST00000535821 231 ntBASIC0.32□□□□□ -2.36
SHANK1Q9Y566 SNORD92-201ENST00000585078 85 ntBASIC0.32□□□□□ -2.36
SHANK1Q9Y566 AC011603.4-201ENST00000611325 277 ntBASIC0.32□□□□□ -2.36
SHANK1Q9Y566 SNORA9.1-201ENST00000362412 131 ntBASIC0.32□□□□□ -2.36
SHANK1Q9Y566 Y_RNA.65-201ENST00000362846 100 ntBASIC0.32□□□□□ -2.36
SHANK1Q9Y566 Y_RNA.430-201ENST00000384081 110 ntBASIC0.32□□□□□ -2.36
SHANK1Q9Y566 Y_RNA.478-201ENST00000384358 107 ntBASIC0.32□□□□□ -2.36
SHANK1Q9Y566 RNU6-578P-201ENST00000390980 103 ntBASIC0.32□□□□□ -2.36
SHANK1Q9Y566 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC0.32□□□□□ -2.36
SHANK1Q9Y566 RNU6-135P-201ENST00000516769 101 ntBASIC0.32□□□□□ -2.36
SHANK1Q9Y566 RNU7-156P-201ENST00000517214 74 ntBASIC0.32□□□□□ -2.36
SHANK1Q9Y566 MTND5P34-201ENST00000568888 325 ntBASIC0.32□□□□□ -2.36
SHANK1Q9Y566 uc_338.16-201ENST00000621804 95 ntBASIC0.32□□□□□ -2.36
SHANK1Q9Y566 Y_RNA.440-201ENST00000384120 114 ntBASIC0.31□□□□□ -2.36
SHANK1Q9Y566 RNU6-1289P-201ENST00000384431 106 ntBASIC0.31□□□□□ -2.36
SHANK1Q9Y566 MIR125B2-201ENST00000385128 89 ntBASIC0.31□□□□□ -2.36
SHANK1Q9Y566 RNU6-1165P-201ENST00000410119 107 ntBASIC0.31□□□□□ -2.36
SHANK1Q9Y566 Y_RNA.797-201ENST00000515977 94 ntBASIC0.31□□□□□ -2.36
SHANK1Q9Y566 RNU6-863P-201ENST00000515989 104 ntBASIC0.31□□□□□ -2.36
SHANK1Q9Y566 SNORD36C-201ENST00000516733 66 ntBASIC0.31□□□□□ -2.36
SHANK1Q9Y566 AP003327.1-201ENST00000529684 127 ntBASIC0.31□□□□□ -2.36
SHANK1Q9Y566 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.31□□□□□ -2.36
SHANK1Q9Y566 MIR411-201ENST00000362239 96 ntBASIC0.3□□□□□ -2.36
SHANK1Q9Y566 RNY4P28-201ENST00000365281 93 ntBASIC0.3□□□□□ -2.36
SHANK1Q9Y566 Y_RNA.476-201ENST00000384347 108 ntBASIC0.3□□□□□ -2.36
SHANK1Q9Y566 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.3□□□□□ -2.36
SHANK1Q9Y566 RNU6-918P-201ENST00000391219 106 ntBASIC0.3□□□□□ -2.36
SHANK1Q9Y566 SNORD100-201ENST00000408573 76 ntBASIC0.3□□□□□ -2.36
SHANK1Q9Y566 RNU6-561P-201ENST00000516222 102 ntBASIC0.3□□□□□ -2.36
SHANK1Q9Y566 MIR3128-201ENST00000581957 66 ntBASIC0.3□□□□□ -2.36
SHANK1Q9Y566 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.3□□□□□ -2.36
SHANK1Q9Y566 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.3□□□□□ -2.36
SHANK1Q9Y566 RNU6-349P-201ENST00000362402 107 ntBASIC0.3□□□□□ -2.36
SHANK1Q9Y566 Y_RNA.20-201ENST00000362479 113 ntBASIC0.3□□□□□ -2.36
SHANK1Q9Y566 Y_RNA.75-201ENST00000362927 97 ntBASIC0.3□□□□□ -2.36
SHANK1Q9Y566 RNU6-934P-201ENST00000365154 107 ntBASIC0.3□□□□□ -2.36
SHANK1Q9Y566 RNU6-949P-201ENST00000384040 107 ntBASIC0.3□□□□□ -2.36
SHANK1Q9Y566 MIR563-201ENST00000385080 79 ntBASIC0.3□□□□□ -2.36
SHANK1Q9Y566 MIRLET7F2-201ENST00000385277 83 ntBASIC0.3□□□□□ -2.36
SHANK1Q9Y566 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.3□□□□□ -2.36
SHANK1Q9Y566 SNORD93-201ENST00000408813 74 ntBASIC0.3□□□□□ -2.36
SHANK1Q9Y566 RNU7-113P-201ENST00000459273 62 ntBASIC0.3□□□□□ -2.36
SHANK1Q9Y566 MIR4771-2-201ENST00000577758 74 ntBASIC0.3□□□□□ -2.36
SHANK1Q9Y566 MIR4771-1-201ENST00000582617 74 ntBASIC0.3□□□□□ -2.36
SHANK1Q9Y566 MTRNR2L2-201ENST00000604882 87 ntBASIC0.3□□□□□ -2.36
SHANK1Q9Y566 AL353765.1-201ENST00000605514 183 ntBASIC0.3□□□□□ -2.36
SHANK1Q9Y566 uc_338.6-201ENST00000613544 171 ntBASIC0.3□□□□□ -2.36
SHANK1Q9Y566 MIR6755-201ENST00000619993 66 ntBASIC0.3□□□□□ -2.36
SHANK1Q9Y566 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.3□□□□□ -2.36
SHANK1Q9Y566 AL596211.1-201ENST00000569873 2277 ntBASIC0.3□□□□□ -2.36
SHANK1Q9Y566 RNU6-945P-201ENST00000383947 107 ntBASIC0.29□□□□□ -2.36
SHANK1Q9Y566 SNORA18-201ENST00000384416 132 ntBASIC0.29□□□□□ -2.36
SHANK1Q9Y566 Y_RNA.562-201ENST00000384695 113 ntBASIC0.29□□□□□ -2.36
SHANK1Q9Y566 MIR568-201ENST00000385036 95 ntBASIC0.29□□□□□ -2.36
SHANK1Q9Y566 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.29□□□□□ -2.36
SHANK1Q9Y566 MIR4667-201ENST00000578933 66 ntBASIC0.29□□□□□ -2.36
SHANK1Q9Y566 MIR378D2-201ENST00000580636 98 ntBASIC0.29□□□□□ -2.36
SHANK1Q9Y566 AC091932.4-201ENST00000623386 200 ntBASIC0.29□□□□□ -2.36
SHANK1Q9Y566 AL162376.1-201ENST00000624117 175 ntBASIC0.29□□□□□ -2.36
SHANK1Q9Y566 RNU6-702P-201ENST00000364982 107 ntBASIC0.29□□□□□ -2.36
SHANK1Q9Y566 Y_RNA.584-201ENST00000391090 114 ntBASIC0.29□□□□□ -2.36
SHANK1Q9Y566 Y_RNA.622-201ENST00000411091 108 ntBASIC0.29□□□□□ -2.36
SHANK1Q9Y566 RNU7-53P-201ENST00000516705 60 ntBASIC0.29□□□□□ -2.36
SHANK1Q9Y566 AC090897.1-201ENST00000580909 226 ntBASIC0.29□□□□□ -2.36
SHANK1Q9Y566 AC010332.2-201ENST00000613083 1904 ntBASIC0.28□□□□□ -2.36
SHANK1Q9Y566 RNU6-888P-201ENST00000363010 101 ntBASIC0.28□□□□□ -2.36
SHANK1Q9Y566 RNY1P8-201ENST00000383970 114 ntBASIC0.28□□□□□ -2.36
SHANK1Q9Y566 Y_RNA.531-201ENST00000384589 121 ntBASIC0.28□□□□□ -2.36
SHANK1Q9Y566 AL118496.2-201ENST00000448300 230 ntBASIC0.28□□□□□ -2.36
SHANK1Q9Y566 RNU6-388P-201ENST00000517012 105 ntBASIC0.28□□□□□ -2.36
SHANK1Q9Y566 RNU6-389P-201ENST00000517048 105 ntBASIC0.28□□□□□ -2.36
SHANK1Q9Y566 Y_RNA.52-201ENST00000362760 96 ntBASIC0.28□□□□□ -2.37
SHANK1Q9Y566 Y_RNA.182-201ENST00000363880 111 ntBASIC0.28□□□□□ -2.37
SHANK1Q9Y566 Y_RNA.200-201ENST00000364018 102 ntBASIC0.28□□□□□ -2.37
SHANK1Q9Y566 SNORA20.1-201ENST00000364790 130 ntBASIC0.28□□□□□ -2.37
SHANK1Q9Y566 Y_RNA.307-201ENST00000365022 117 ntBASIC0.28□□□□□ -2.37
SHANK1Q9Y566 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.28□□□□□ -2.37
SHANK1Q9Y566 RNU6-447P-201ENST00000410293 104 ntBASIC0.28□□□□□ -2.37
SHANK1Q9Y566 RNU6-1118P-201ENST00000410382 104 ntBASIC0.28□□□□□ -2.37
SHANK1Q9Y566 RNU6-1076P-201ENST00000410397 104 ntBASIC0.28□□□□□ -2.37
SHANK1Q9Y566 RNU6-355P-201ENST00000410427 104 ntBASIC0.28□□□□□ -2.37
SHANK1Q9Y566 RNU6-791P-201ENST00000410467 104 ntBASIC0.28□□□□□ -2.37
SHANK1Q9Y566 RNU6-705P-201ENST00000410601 104 ntBASIC0.28□□□□□ -2.37
SHANK1Q9Y566 RNU6-1100P-201ENST00000410691 104 ntBASIC0.28□□□□□ -2.37
SHANK1Q9Y566 RNU6-1190P-201ENST00000410811 104 ntBASIC0.28□□□□□ -2.37
SHANK1Q9Y566 RNU6-860P-201ENST00000410860 104 ntBASIC0.28□□□□□ -2.37
SHANK1Q9Y566 RNA5SP222-201ENST00000411039 105 ntBASIC0.28□□□□□ -2.37
SHANK1Q9Y566 RNU6-1217P-201ENST00000411276 104 ntBASIC0.28□□□□□ -2.37
SHANK1Q9Y566 RNU6-785P-201ENST00000411324 104 ntBASIC0.28□□□□□ -2.37
SHANK1Q9Y566 snoU13.11-201ENST00000459219 104 ntBASIC0.28□□□□□ -2.37
SHANK1Q9Y566 MIR3646-201ENST00000578301 84 ntBASIC0.28□□□□□ -2.37
SHANK1Q9Y566 MIR4493-201ENST00000584016 73 ntBASIC0.28□□□□□ -2.37
SHANK1Q9Y566 AP001180.6-201ENST00000584918 159 ntBASIC0.28□□□□□ -2.37
SHANK1Q9Y566 U6.90-201ENST00000614007 104 ntBASIC0.28□□□□□ -2.37
SHANK1Q9Y566 U6.70-201ENST00000620287 104 ntBASIC0.28□□□□□ -2.37
SHANK1Q9Y566 U6.106-201ENST00000636360 105 ntBASIC0.28□□□□□ -2.37
SHANK1Q9Y566 SNORA50A-201ENST00000384225 134 ntBASIC0.27□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms