Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 Y_RNA.43-201ENST00000362670 111 ntBASIC1.86□□□□□ -2.11
CCDC9Q9Y3X0 Y_RNA.52-201ENST00000362760 96 ntBASIC1.86□□□□□ -2.11
CCDC9Q9Y3X0 RNU6-309P-201ENST00000364573 106 ntBASIC1.86□□□□□ -2.11
CCDC9Q9Y3X0 SNORD116-21-201ENST00000384507 92 ntBASIC1.86□□□□□ -2.11
CCDC9Q9Y3X0 MIR150-201ENST00000385048 84 ntBASIC1.86□□□□□ -2.11
CCDC9Q9Y3X0 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.86□□□□□ -2.11
CCDC9Q9Y3X0 MIR548J-201ENST00000408833 112 ntBASIC1.86□□□□□ -2.11
CCDC9Q9Y3X0 MTATP6P21-201ENST00000440681 189 ntBASIC1.86□□□□□ -2.11
CCDC9Q9Y3X0 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.86□□□□□ -2.11
CCDC9Q9Y3X0 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
CCDC9Q9Y3X0 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
CCDC9Q9Y3X0 Y_RNA.346-201ENST00000365385 112 ntBASIC1.85□□□□□ -2.11
CCDC9Q9Y3X0 RNU6-147P-201ENST00000383983 107 ntBASIC1.85□□□□□ -2.11
CCDC9Q9Y3X0 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC1.85□□□□□ -2.11
CCDC9Q9Y3X0 RN7SKP19-201ENST00000516016 252 ntBASIC1.85□□□□□ -2.11
CCDC9Q9Y3X0 RNU6-781P-201ENST00000516377 101 ntBASIC1.85□□□□□ -2.11
CCDC9Q9Y3X0 RNA5SP170-201ENST00000517150 101 ntBASIC1.85□□□□□ -2.11
CCDC9Q9Y3X0 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.85□□□□□ -2.11
CCDC9Q9Y3X0 MIR6516-201ENST00000630554 81 ntBASIC1.85□□□□□ -2.11
CCDC9Q9Y3X0 MIR376A2-201ENST00000636782 80 ntBASIC1.85□□□□□ -2.11
CCDC9Q9Y3X0 RNU6-508P-201ENST00000363231 103 ntBASIC1.84□□□□□ -2.11
CCDC9Q9Y3X0 MIR19B1-201ENST00000384829 87 ntBASIC1.84□□□□□ -2.11
CCDC9Q9Y3X0 MIRLET7F2-201ENST00000385277 83 ntBASIC1.84□□□□□ -2.11
CCDC9Q9Y3X0 AP000753.3-201ENST00000604083 169 ntBASIC1.84□□□□□ -2.11
CCDC9Q9Y3X0 AC025166.1-201ENST00000612411 163 ntBASIC1.84□□□□□ -2.11
CCDC9Q9Y3X0 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC1.84□□□□□ -2.11
CCDC9Q9Y3X0 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.84□□□□□ -2.12
CCDC9Q9Y3X0 Y_RNA.35-201ENST00000362601 101 ntBASIC1.83□□□□□ -2.12
CCDC9Q9Y3X0 Y_RNA.309-201ENST00000365046 111 ntBASIC1.83□□□□□ -2.12
CCDC9Q9Y3X0 RNU6-880P-201ENST00000384526 107 ntBASIC1.83□□□□□ -2.12
CCDC9Q9Y3X0 RNU6-913P-201ENST00000390913 95 ntBASIC1.83□□□□□ -2.12
CCDC9Q9Y3X0 Y_RNA.649-201ENST00000459077 103 ntBASIC1.83□□□□□ -2.12
CCDC9Q9Y3X0 RNU1-124P-201ENST00000363861 145 ntBASIC1.82□□□□□ -2.12
CCDC9Q9Y3X0 SNORA1.1-201ENST00000364671 133 ntBASIC1.82□□□□□ -2.12
CCDC9Q9Y3X0 RNU6-613P-201ENST00000410412 108 ntBASIC1.82□□□□□ -2.12
CCDC9Q9Y3X0 Y_RNA.651-201ENST00000459380 103 ntBASIC1.82□□□□□ -2.12
CCDC9Q9Y3X0 AC023827.1-201ENST00000569247 97 ntBASIC1.82□□□□□ -2.12
CCDC9Q9Y3X0 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.82□□□□□ -2.12
CCDC9Q9Y3X0 RNU6-1255P-201ENST00000363434 112 ntBASIC1.81□□□□□ -2.12
CCDC9Q9Y3X0 MIR548A1-201ENST00000385041 97 ntBASIC1.81□□□□□ -2.12
CCDC9Q9Y3X0 RNA5SP436-201ENST00000516020 115 ntBASIC1.81□□□□□ -2.12
CCDC9Q9Y3X0 RNA5SP236-201ENST00000516169 116 ntBASIC1.81□□□□□ -2.12
CCDC9Q9Y3X0 MTND5P18-201ENST00000445624 1801 ntBASIC1.81□□□□□ -2.12
CCDC9Q9Y3X0 AL596211.1-201ENST00000569873 2277 ntBASIC1.8□□□□□ -2.12
CCDC9Q9Y3X0 RNU6-654P-201ENST00000364373 107 ntBASIC1.8□□□□□ -2.12
CCDC9Q9Y3X0 RNA5SP261-201ENST00000410536 106 ntBASIC1.8□□□□□ -2.12
CCDC9Q9Y3X0 RNU6-168P-201ENST00000516189 101 ntBASIC1.8□□□□□ -2.12
CCDC9Q9Y3X0 RNU6-113P-201ENST00000516653 101 ntBASIC1.8□□□□□ -2.12
CCDC9Q9Y3X0 AL020996.3-201ENST00000606617 222 ntBASIC1.8□□□□□ -2.12
CCDC9Q9Y3X0 AC091932.4-201ENST00000623386 200 ntBASIC1.8□□□□□ -2.12
CCDC9Q9Y3X0 SNORA2B-201ENST00000384583 137 ntBASIC1.79□□□□□ -2.12
CCDC9Q9Y3X0 SNORD38B-201ENST00000384690 67 ntBASIC1.79□□□□□ -2.12
CCDC9Q9Y3X0 MT-TN-201ENST00000387400 73 ntBASIC1.79□□□□□ -2.12
CCDC9Q9Y3X0 RNA5SP89-201ENST00000410300 108 ntBASIC1.79□□□□□ -2.12
CCDC9Q9Y3X0 RNU6-1149P-201ENST00000516810 97 ntBASIC1.79□□□□□ -2.12
CCDC9Q9Y3X0 IGKV1-22-201ENST00000524313 326 ntBASIC1.79□□□□□ -2.12
CCDC9Q9Y3X0 SNORD38B-202ENST00000625943 69 ntBASIC1.79□□□□□ -2.12
CCDC9Q9Y3X0 RNU1-133P-201ENST00000364867 167 ntBASIC1.78□□□□□ -2.12
CCDC9Q9Y3X0 MIR200A-201ENST00000384875 90 ntBASIC1.78□□□□□ -2.12
CCDC9Q9Y3X0 MIR1263-201ENST00000408324 86 ntBASIC1.78□□□□□ -2.12
CCDC9Q9Y3X0 AC004223.1-201ENST00000479840 271 ntBASIC1.78□□□□□ -2.12
CCDC9Q9Y3X0 RNU6-412P-201ENST00000516434 106 ntBASIC1.78□□□□□ -2.12
CCDC9Q9Y3X0 MIR4264-201ENST00000583520 66 ntBASIC1.78□□□□□ -2.12
CCDC9Q9Y3X0 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.78□□□□□ -2.12
CCDC9Q9Y3X0 Z97988.1-201ENST00000637697 135 ntBASIC1.78□□□□□ -2.12
CCDC9Q9Y3X0 SNORD113.3-201ENST00000364630 78 ntBASIC1.77□□□□□ -2.13
CCDC9Q9Y3X0 RNU6-32P-201ENST00000383948 107 ntBASIC1.77□□□□□ -2.13
CCDC9Q9Y3X0 RNU6-13P-201ENST00000384248 107 ntBASIC1.77□□□□□ -2.13
CCDC9Q9Y3X0 Y_RNA.528-201ENST00000384575 108 ntBASIC1.77□□□□□ -2.13
CCDC9Q9Y3X0 RNU6-12P-201ENST00000384604 107 ntBASIC1.77□□□□□ -2.13
CCDC9Q9Y3X0 RNU6-41P-201ENST00000384741 107 ntBASIC1.77□□□□□ -2.13
CCDC9Q9Y3X0 RNA5SP136-201ENST00000410906 107 ntBASIC1.77□□□□□ -2.13
CCDC9Q9Y3X0 AL031737.1-201ENST00000450125 223 ntBASIC1.77□□□□□ -2.13
CCDC9Q9Y3X0 Y_RNA.694-201ENST00000516677 117 ntBASIC1.77□□□□□ -2.13
CCDC9Q9Y3X0 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1.77□□□□□ -2.13
CCDC9Q9Y3X0 MIR8055-201ENST00000610739 97 ntBASIC1.77□□□□□ -2.13
CCDC9Q9Y3X0 Y_RNA.281-201ENST00000364774 94 ntBASIC1.76□□□□□ -2.13
CCDC9Q9Y3X0 Y_RNA.495-201ENST00000384435 112 ntBASIC1.76□□□□□ -2.13
CCDC9Q9Y3X0 SNORD111-201ENST00000408139 94 ntBASIC1.76□□□□□ -2.13
CCDC9Q9Y3X0 RNA5SP95-201ENST00000410319 137 ntBASIC1.76□□□□□ -2.13
CCDC9Q9Y3X0 HMGN1P33-201ENST00000432945 451 ntBASIC1.76□□□□□ -2.13
CCDC9Q9Y3X0 RPS23P4-201ENST00000487908 423 ntBASIC1.76□□□□□ -2.13
CCDC9Q9Y3X0 SCARNA15-202ENST00000516881 127 ntBASIC1.76□□□□□ -2.13
CCDC9Q9Y3X0 AC006254.2-201ENST00000603259 279 ntBASIC1.76□□□□□ -2.13
CCDC9Q9Y3X0 AC106800.4-201ENST00000614905 153 ntBASIC1.76□□□□□ -2.13
CCDC9Q9Y3X0 MIR377-201ENST00000362145 69 ntBASIC1.75□□□□□ -2.13
CCDC9Q9Y3X0 MIR450A1-201ENST00000362262 91 ntBASIC1.75□□□□□ -2.13
CCDC9Q9Y3X0 MIR320A-201ENST00000385302 82 ntBASIC1.75□□□□□ -2.13
CCDC9Q9Y3X0 SNORA40.6-201ENST00000391153 128 ntBASIC1.75□□□□□ -2.13
CCDC9Q9Y3X0 RNU6-994P-201ENST00000410507 111 ntBASIC1.75□□□□□ -2.13
CCDC9Q9Y3X0 AC090844.1-201ENST00000422019 156 ntBASIC1.75□□□□□ -2.13
CCDC9Q9Y3X0 SNORA72.7-201ENST00000516349 94 ntBASIC1.75□□□□□ -2.13
CCDC9Q9Y3X0 AC036111.3-201ENST00000526389 112 ntBASIC1.75□□□□□ -2.13
CCDC9Q9Y3X0 AC007012.1-201ENST00000567192 175 ntBASIC1.75□□□□□ -2.13
CCDC9Q9Y3X0 uc_338.28-201ENST00000612082 187 ntBASIC1.75□□□□□ -2.13
CCDC9Q9Y3X0 AL137067.1-201ENST00000615933 120 ntBASIC1.75□□□□□ -2.13
CCDC9Q9Y3X0 MIR6767-201ENST00000637302 66 ntBASIC1.75□□□□□ -2.13
CCDC9Q9Y3X0 MIR4679-1-201ENST00000637619 75 ntBASIC1.75□□□□□ -2.13
CCDC9Q9Y3X0 Y_RNA.168-201ENST00000363740 102 ntBASIC1.74□□□□□ -2.13
CCDC9Q9Y3X0 SNORD114-24-201ENST00000365029 72 ntBASIC1.74□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms