Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 Y_RNA.626-201ENST00000411288 95 ntBASIC0.29□□□□□ -2.36
LHX3Q9UBR4 SNORD71-201ENST00000411292 86 ntBASIC0.29□□□□□ -2.36
LHX3Q9UBR4 MTCYBP9-201ENST00000431021 303 ntBASIC0.29□□□□□ -2.36
LHX3Q9UBR4 MTND1P19-201ENST00000511780 315 ntBASIC0.29□□□□□ -2.36
LHX3Q9UBR4 RNU6-327P-201ENST00000516270 127 ntBASIC0.29□□□□□ -2.36
LHX3Q9UBR4 RNA5SP134-201ENST00000516492 96 ntBASIC0.29□□□□□ -2.36
LHX3Q9UBR4 RNU6-1336P-201ENST00000383886 109 ntBASIC0.28□□□□□ -2.36
LHX3Q9UBR4 SNORA18-201ENST00000384416 132 ntBASIC0.28□□□□□ -2.36
LHX3Q9UBR4 MIR624-201ENST00000385217 97 ntBASIC0.28□□□□□ -2.36
LHX3Q9UBR4 MIR644A-201ENST00000385262 94 ntBASIC0.28□□□□□ -2.36
LHX3Q9UBR4 MTND5P32-201ENST00000560711 1802 ntBASIC0.27□□□□□ -2.37
LHX3Q9UBR4 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.27□□□□□ -2.37
LHX3Q9UBR4 Y_RNA.115-201ENST00000363272 98 ntBASIC0.27□□□□□ -2.37
LHX3Q9UBR4 Y_RNA.121-201ENST00000363309 113 ntBASIC0.27□□□□□ -2.37
LHX3Q9UBR4 Y_RNA.133-201ENST00000363428 110 ntBASIC0.27□□□□□ -2.37
LHX3Q9UBR4 SNORA72.6-201ENST00000384520 129 ntBASIC0.27□□□□□ -2.37
LHX3Q9UBR4 RNU4-70P-201ENST00000384579 139 ntBASIC0.27□□□□□ -2.37
LHX3Q9UBR4 Y_RNA.588-201ENST00000391254 102 ntBASIC0.27□□□□□ -2.37
LHX3Q9UBR4 MIR4491-201ENST00000581087 68 ntBASIC0.27□□□□□ -2.37
LHX3Q9UBR4 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.27□□□□□ -2.37
LHX3Q9UBR4 SNORD44.1-201ENST00000363202 61 ntBASIC0.26□□□□□ -2.37
LHX3Q9UBR4 RNU6-1327P-201ENST00000365302 105 ntBASIC0.26□□□□□ -2.37
LHX3Q9UBR4 RNU6-716P-201ENST00000365621 103 ntBASIC0.26□□□□□ -2.37
LHX3Q9UBR4 SNORA8.2-201ENST00000384372 139 ntBASIC0.26□□□□□ -2.37
LHX3Q9UBR4 MIR1302-3-201ENST00000408128 138 ntBASIC0.26□□□□□ -2.37
LHX3Q9UBR4 RNU6-469P-201ENST00000516253 101 ntBASIC0.26□□□□□ -2.37
LHX3Q9UBR4 RNU6-1258P-201ENST00000516911 111 ntBASIC0.26□□□□□ -2.37
LHX3Q9UBR4 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.26□□□□□ -2.37
LHX3Q9UBR4 AC022523.2-201ENST00000561045 150 ntBASIC0.26□□□□□ -2.37
LHX3Q9UBR4 MIR3128-201ENST00000581957 66 ntBASIC0.26□□□□□ -2.37
LHX3Q9UBR4 MIR6082-201ENST00000613604 109 ntBASIC0.26□□□□□ -2.37
LHX3Q9UBR4 Y_RNA.20-201ENST00000362479 113 ntBASIC0.25□□□□□ -2.37
LHX3Q9UBR4 SNORA25.7-201ENST00000364375 127 ntBASIC0.25□□□□□ -2.37
LHX3Q9UBR4 RNU6-275P-201ENST00000364910 107 ntBASIC0.25□□□□□ -2.37
LHX3Q9UBR4 Y_RNA.350-201ENST00000365409 98 ntBASIC0.25□□□□□ -2.37
LHX3Q9UBR4 RNU6-949P-201ENST00000384040 107 ntBASIC0.25□□□□□ -2.37
LHX3Q9UBR4 Y_RNA.556-201ENST00000384677 113 ntBASIC0.25□□□□□ -2.37
LHX3Q9UBR4 AC096949.1-201ENST00000412047 152 ntBASIC0.25□□□□□ -2.37
LHX3Q9UBR4 SNRPGP12-201ENST00000449481 213 ntBASIC0.25□□□□□ -2.37
LHX3Q9UBR4 Y_RNA.668-201ENST00000516233 93 ntBASIC0.25□□□□□ -2.37
LHX3Q9UBR4 RNA5SP330-201ENST00000517096 96 ntBASIC0.25□□□□□ -2.37
LHX3Q9UBR4 MRPS18CP4-201ENST00000535821 231 ntBASIC0.25□□□□□ -2.37
LHX3Q9UBR4 Y_RNA.757-201ENST00000578934 114 ntBASIC0.25□□□□□ -2.37
LHX3Q9UBR4 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.25□□□□□ -2.37
LHX3Q9UBR4 U6.106-201ENST00000636360 105 ntBASIC0.25□□□□□ -2.37
LHX3Q9UBR4 SNORA36.1-201ENST00000363424 132 ntBASIC0.24□□□□□ -2.37
LHX3Q9UBR4 SNORD118-201ENST00000363593 134 ntBASIC0.24□□□□□ -2.37
LHX3Q9UBR4 Y_RNA.171-201ENST00000363760 102 ntBASIC0.24□□□□□ -2.37
LHX3Q9UBR4 RNY1P13-201ENST00000365030 105 ntBASIC0.24□□□□□ -2.37
LHX3Q9UBR4 Y_RNA.412-201ENST00000384001 104 ntBASIC0.24□□□□□ -2.37
LHX3Q9UBR4 Y_RNA.515-201ENST00000384535 112 ntBASIC0.24□□□□□ -2.37
LHX3Q9UBR4 Y_RNA.521-201ENST00000384560 114 ntBASIC0.24□□□□□ -2.37
LHX3Q9UBR4 RNU5E-9P-201ENST00000411164 104 ntBASIC0.24□□□□□ -2.37
LHX3Q9UBR4 AL512326.2-201ENST00000426359 151 ntBASIC0.24□□□□□ -2.37
LHX3Q9UBR4 Y_RNA.680-201ENST00000516441 93 ntBASIC0.24□□□□□ -2.37
LHX3Q9UBR4 AP003327.1-201ENST00000529684 127 ntBASIC0.24□□□□□ -2.37
LHX3Q9UBR4 Y_RNA.32-201ENST00000362589 110 ntBASIC0.23□□□□□ -2.37
LHX3Q9UBR4 RNY1P6-201ENST00000384193 109 ntBASIC0.23□□□□□ -2.37
LHX3Q9UBR4 SNORD58.1-201ENST00000391313 66 ntBASIC0.23□□□□□ -2.37
LHX3Q9UBR4 AL118496.2-201ENST00000448300 230 ntBASIC0.23□□□□□ -2.37
LHX3Q9UBR4 AC108740.1-201ENST00000498629 225 ntBASIC0.23□□□□□ -2.37
LHX3Q9UBR4 SNORA31.14-201ENST00000516728 116 ntBASIC0.23□□□□□ -2.37
LHX3Q9UBR4 SNORA25.16-201ENST00000516741 121 ntBASIC0.23□□□□□ -2.37
LHX3Q9UBR4 MTND5P34-201ENST00000568888 325 ntBASIC0.23□□□□□ -2.37
LHX3Q9UBR4 AC062037.2-201ENST00000610137 73 ntBASIC0.23□□□□□ -2.37
LHX3Q9UBR4 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.23□□□□□ -2.37
LHX3Q9UBR4 Y_RNA.60-201ENST00000362831 98 ntBASIC0.22□□□□□ -2.37
LHX3Q9UBR4 RNU6-1086P-201ENST00000410930 100 ntBASIC0.22□□□□□ -2.37
LHX3Q9UBR4 RNU6-893P-201ENST00000458841 100 ntBASIC0.22□□□□□ -2.37
LHX3Q9UBR4 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.22□□□□□ -2.37
LHX3Q9UBR4 RNU7-79P-201ENST00000516082 62 ntBASIC0.22□□□□□ -2.37
LHX3Q9UBR4 AL109933.3-201ENST00000619095 188 ntBASIC0.22□□□□□ -2.37
LHX3Q9UBR4 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.22□□□□□ -2.37
LHX3Q9UBR4 RNA5SP62-201ENST00000363457 110 ntBASIC0.21□□□□□ -2.38
LHX3Q9UBR4 Y_RNA.162-201ENST00000363683 102 ntBASIC0.21□□□□□ -2.38
LHX3Q9UBR4 MIR1197-201ENST00000408818 88 ntBASIC0.21□□□□□ -2.38
LHX3Q9UBR4 RNA5SP144-201ENST00000410846 116 ntBASIC0.21□□□□□ -2.38
LHX3Q9UBR4 RNU4-71P-201ENST00000516258 113 ntBASIC0.21□□□□□ -2.38
LHX3Q9UBR4 SCARNA15.1-201ENST00000516384 125 ntBASIC0.21□□□□□ -2.38
LHX3Q9UBR4 Y_RNA.697-201ENST00000516776 113 ntBASIC0.21□□□□□ -2.38
LHX3Q9UBR4 RNU6-111P-201ENST00000517179 105 ntBASIC0.21□□□□□ -2.38
LHX3Q9UBR4 MIR4514-201ENST00000581410 57 ntBASIC0.21□□□□□ -2.38
LHX3Q9UBR4 AC023932.2-201ENST00000603176 175 ntBASIC0.21□□□□□ -2.38
LHX3Q9UBR4 Y_RNA.52-201ENST00000362760 96 ntBASIC0.2□□□□□ -2.38
LHX3Q9UBR4 Y_RNA.75-201ENST00000362927 97 ntBASIC0.2□□□□□ -2.38
LHX3Q9UBR4 Y_RNA.258-201ENST00000364613 105 ntBASIC0.2□□□□□ -2.38
LHX3Q9UBR4 Y_RNA.470-201ENST00000384307 117 ntBASIC0.2□□□□□ -2.38
LHX3Q9UBR4 Y_RNA.478-201ENST00000384358 107 ntBASIC0.2□□□□□ -2.38
LHX3Q9UBR4 Y_RNA.536-201ENST00000384621 113 ntBASIC0.2□□□□□ -2.38
LHX3Q9UBR4 RNU6-535P-201ENST00000384722 107 ntBASIC0.2□□□□□ -2.38
LHX3Q9UBR4 RNU7-113P-201ENST00000459273 62 ntBASIC0.2□□□□□ -2.38
LHX3Q9UBR4 RNU6-1045P-201ENST00000516321 107 ntBASIC0.2□□□□□ -2.38
LHX3Q9UBR4 RNU6-765P-201ENST00000516916 99 ntBASIC0.2□□□□□ -2.38
LHX3Q9UBR4 MIR5093-201ENST00000583199 100 ntBASIC0.2□□□□□ -2.38
LHX3Q9UBR4 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.2□□□□□ -2.38
LHX3Q9UBR4 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.2□□□□□ -2.38
LHX3Q9UBR4 RNU6-349P-201ENST00000362402 107 ntBASIC0.19□□□□□ -2.38
LHX3Q9UBR4 Y_RNA.174-201ENST00000363781 105 ntBASIC0.19□□□□□ -2.38
LHX3Q9UBR4 Y_RNA.251-201ENST00000364551 99 ntBASIC0.19□□□□□ -2.38
LHX3Q9UBR4 SNORA20.1-201ENST00000364790 130 ntBASIC0.19□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 263.8 ms