Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AC098614.3-201ENST00000438957 440 ntBASIC-0.42□□□□□ -2.48
USP42Q9H9J4 SNORD19B-201ENST00000459623 84 ntBASIC-0.42□□□□□ -2.48
USP42Q9H9J4 RNU6-976P-201ENST00000516086 111 ntBASIC-0.42□□□□□ -2.48
USP42Q9H9J4 RNU6-1265P-201ENST00000516342 103 ntBASIC-0.42□□□□□ -2.48
USP42Q9H9J4 CR383656.4-201ENST00000546909 122 ntBASIC-0.42□□□□□ -2.48
USP42Q9H9J4 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC-0.42□□□□□ -2.48
USP42Q9H9J4 MIR1302-2-201ENST00000607096 138 ntBASIC-0.42□□□□□ -2.48
USP42Q9H9J4 AC112487.2-201ENST00000637950 304 ntBASIC-0.42□□□□□ -2.48
USP42Q9H9J4 snoU2_19.2-201ENST00000363024 80 ntBASIC-0.43□□□□□ -2.48
USP42Q9H9J4 RNU4-58P-201ENST00000363192 141 ntBASIC-0.43□□□□□ -2.48
USP42Q9H9J4 RNA5SP403-201ENST00000363598 108 ntBASIC-0.43□□□□□ -2.48
USP42Q9H9J4 RNU6-290P-201ENST00000365212 101 ntBASIC-0.43□□□□□ -2.48
USP42Q9H9J4 Y_RNA.366-201ENST00000365540 102 ntBASIC-0.43□□□□□ -2.48
USP42Q9H9J4 SNORA20-201ENST00000384662 132 ntBASIC-0.43□□□□□ -2.48
USP42Q9H9J4 SNORD41.1-201ENST00000391000 69 ntBASIC-0.43□□□□□ -2.48
USP42Q9H9J4 Y_RNA.618-201ENST00000410949 107 ntBASIC-0.43□□□□□ -2.48
USP42Q9H9J4 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC-0.43□□□□□ -2.48
USP42Q9H9J4 AL731563.1-201ENST00000442202 214 ntBASIC-0.43□□□□□ -2.48
USP42Q9H9J4 RNU7-104P-201ENST00000459398 79 ntBASIC-0.43□□□□□ -2.48
USP42Q9H9J4 SNORA27.4-201ENST00000516650 95 ntBASIC-0.43□□□□□ -2.48
USP42Q9H9J4 RNU6-453P-201ENST00000516819 85 ntBASIC-0.43□□□□□ -2.48
USP42Q9H9J4 Y_RNA.757-201ENST00000578934 114 ntBASIC-0.43□□□□□ -2.48
USP42Q9H9J4 MIR378D2-201ENST00000580636 98 ntBASIC-0.43□□□□□ -2.48
USP42Q9H9J4 MIR548AZ-201ENST00000616567 95 ntBASIC-0.43□□□□□ -2.48
USP42Q9H9J4 U6.109-201ENST00000636749 87 ntBASIC-0.43□□□□□ -2.48
USP42Q9H9J4 MIR101-2-201ENST00000362195 79 ntBASIC-0.44□□□□□ -2.48
USP42Q9H9J4 Y_RNA.171-201ENST00000363760 102 ntBASIC-0.44□□□□□ -2.48
USP42Q9H9J4 RNU6-326P-201ENST00000365480 107 ntBASIC-0.44□□□□□ -2.48
USP42Q9H9J4 RNU6-211P-201ENST00000384047 107 ntBASIC-0.44□□□□□ -2.48
USP42Q9H9J4 AC138393.2-201ENST00000414742 246 ntBASIC-0.44□□□□□ -2.48
USP42Q9H9J4 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC-0.44□□□□□ -2.48
USP42Q9H9J4 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC-0.44□□□□□ -2.48
USP42Q9H9J4 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC-0.44□□□□□ -2.48
USP42Q9H9J4 DLEU2_5.2-201ENST00000610606 84 ntBASIC-0.44□□□□□ -2.48
USP42Q9H9J4 FTX_2.1-201ENST00000618816 94 ntBASIC-0.44□□□□□ -2.48
USP42Q9H9J4 uc_338.36-201ENST00000622331 158 ntBASIC-0.44□□□□□ -2.48
USP42Q9H9J4 Y_RNA.56-201ENST00000362798 112 ntBASIC-0.45□□□□□ -2.48
USP42Q9H9J4 snoU2_19.4-201ENST00000364329 80 ntBASIC-0.45□□□□□ -2.48
USP42Q9H9J4 RNU4-16P-201ENST00000364737 141 ntBASIC-0.45□□□□□ -2.48
USP42Q9H9J4 Y_RNA.542-201ENST00000384641 111 ntBASIC-0.45□□□□□ -2.48
USP42Q9H9J4 Y_RNA.645-201ENST00000391229 102 ntBASIC-0.45□□□□□ -2.48
USP42Q9H9J4 MIR876-201ENST00000401147 81 ntBASIC-0.45□□□□□ -2.48
USP42Q9H9J4 RNU7-35P-201ENST00000517174 62 ntBASIC-0.45□□□□□ -2.48
USP42Q9H9J4 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC-0.45□□□□□ -2.48
USP42Q9H9J4 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-0.45□□□□□ -2.48
USP42Q9H9J4 AL162726.3-218ENST00000636401 95 ntBASIC-0.45□□□□□ -2.48
USP42Q9H9J4 SNORA25.1-201ENST00000362326 128 ntBASIC-0.46□□□□□ -2.48
USP42Q9H9J4 Y_RNA.125-201ENST00000363371 111 ntBASIC-0.46□□□□□ -2.48
USP42Q9H9J4 RNU4-40P-201ENST00000364351 143 ntBASIC-0.46□□□□□ -2.48
USP42Q9H9J4 RNY1P2-201ENST00000364820 117 ntBASIC-0.46□□□□□ -2.48
USP42Q9H9J4 RNA5SP331-201ENST00000364986 107 ntBASIC-0.46□□□□□ -2.48
USP42Q9H9J4 RNU6-1292P-201ENST00000383856 107 ntBASIC-0.46□□□□□ -2.48
USP42Q9H9J4 Y_RNA.477-201ENST00000384352 108 ntBASIC-0.46□□□□□ -2.48
USP42Q9H9J4 AL606845.1-201ENST00000404881 255 ntBASIC-0.46□□□□□ -2.48
USP42Q9H9J4 RNU6-284P-201ENST00000411105 106 ntBASIC-0.46□□□□□ -2.48
USP42Q9H9J4 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC-0.46□□□□□ -2.48
USP42Q9H9J4 RNU6-561P-201ENST00000516222 102 ntBASIC-0.46□□□□□ -2.48
USP42Q9H9J4 AC084368.1-201ENST00000620935 65 ntBASIC-0.46□□□□□ -2.48
USP42Q9H9J4 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC-0.46□□□□□ -2.48
USP42Q9H9J4 MIR4788-201ENST00000639104 80 ntBASIC-0.46□□□□□ -2.48
USP42Q9H9J4 AC073869.9-201ENST00000641610 120 ntBASIC-0.46□□□□□ -2.48
USP42Q9H9J4 UBE2WP1-201ENST00000362030 340 ntBASIC-0.47□□□□□ -2.48
USP42Q9H9J4 MIR148A-201ENST00000362215 68 ntBASIC-0.47□□□□□ -2.48
USP42Q9H9J4 Y_RNA.31-201ENST00000362574 102 ntBASIC-0.47□□□□□ -2.48
USP42Q9H9J4 Y_RNA.119-201ENST00000363301 96 ntBASIC-0.47□□□□□ -2.48
USP42Q9H9J4 RNY3P5-201ENST00000384127 102 ntBASIC-0.47□□□□□ -2.48
USP42Q9H9J4 Y_RNA.470-201ENST00000384307 117 ntBASIC-0.47□□□□□ -2.48
USP42Q9H9J4 SNORD110-201ENST00000408189 75 ntBASIC-0.47□□□□□ -2.48
USP42Q9H9J4 AC109327.2-201ENST00000448339 378 ntBASIC-0.47□□□□□ -2.48
USP42Q9H9J4 SCARNA15-202ENST00000516881 127 ntBASIC-0.47□□□□□ -2.48
USP42Q9H9J4 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC-0.47□□□□□ -2.48
USP42Q9H9J4 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC-0.47□□□□□ -2.48
USP42Q9H9J4 AC090574.1-201ENST00000623186 233 ntBASIC-0.47□□□□□ -2.48
USP42Q9H9J4 MIR655-201ENST00000362159 97 ntBASIC-0.48□□□□□ -2.49
USP42Q9H9J4 Y_RNA.16-201ENST00000362421 102 ntBASIC-0.48□□□□□ -2.49
USP42Q9H9J4 RNU6-450P-201ENST00000364654 107 ntBASIC-0.48□□□□□ -2.49
USP42Q9H9J4 BX276092.1-201ENST00000427368 251 ntBASIC-0.48□□□□□ -2.49
USP42Q9H9J4 AC074198.2-201ENST00000508153 258 ntBASIC-0.48□□□□□ -2.49
USP42Q9H9J4 IGHVIII-67-2-201ENST00000519849 88 ntBASIC-0.48□□□□□ -2.49
USP42Q9H9J4 AL365205.2-201ENST00000594586 68 ntBASIC-0.48□□□□□ -2.49
USP42Q9H9J4 MIR409-201ENST00000362237 79 ntBASIC-0.49□□□□□ -2.49
USP42Q9H9J4 Y_RNA.70-201ENST00000362886 110 ntBASIC-0.49□□□□□ -2.49
USP42Q9H9J4 SNORD114-11-201ENST00000363738 75 ntBASIC-0.49□□□□□ -2.49
USP42Q9H9J4 Y_RNA.197-201ENST00000364004 102 ntBASIC-0.49□□□□□ -2.49
USP42Q9H9J4 Y_RNA.199-201ENST00000364014 102 ntBASIC-0.49□□□□□ -2.49
USP42Q9H9J4 RNU6-865P-201ENST00000364772 107 ntBASIC-0.49□□□□□ -2.49
USP42Q9H9J4 SNORA63.7-201ENST00000365579 123 ntBASIC-0.49□□□□□ -2.49
USP42Q9H9J4 RNU6-823P-201ENST00000391042 103 ntBASIC-0.49□□□□□ -2.49
USP42Q9H9J4 SNORD75.1-201ENST00000408373 60 ntBASIC-0.49□□□□□ -2.49
USP42Q9H9J4 AC006210.1-201ENST00000424882 111 ntBASIC-0.49□□□□□ -2.49
USP42Q9H9J4 MTND4LP30-201ENST00000454092 297 ntBASIC-0.49□□□□□ -2.49
USP42Q9H9J4 RNA5SP484-201ENST00000458857 111 ntBASIC-0.49□□□□□ -2.49
USP42Q9H9J4 snoU13.11-201ENST00000459219 104 ntBASIC-0.49□□□□□ -2.49
USP42Q9H9J4 AC082651.2-201ENST00000496833 166 ntBASIC-0.49□□□□□ -2.49
USP42Q9H9J4 FGF7P4-201ENST00000509595 295 ntBASIC-0.49□□□□□ -2.49
USP42Q9H9J4 NAMPTP3-201ENST00000569273 224 ntBASIC-0.49□□□□□ -2.49
USP42Q9H9J4 MIR4432-201ENST00000581823 84 ntBASIC-0.49□□□□□ -2.49
USP42Q9H9J4 MIR4263-201ENST00000584745 83 ntBASIC-0.49□□□□□ -2.49
USP42Q9H9J4 AL356055.1-201ENST00000602528 446 ntBASIC-0.49□□□□□ -2.49
USP42Q9H9J4 AL359881.1-201ENST00000602916 267 ntBASIC-0.49□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms