| BRD9 | Q9H8M2 | Y_RNA.198-201 | ENST00000364013 | 98 nt | BASIC | 1.39 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | SNORA25.8-201 | ENST00000364831 | 128 nt | BASIC | 1.39 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | SNORD114-22-201 | ENST00000365423 | 72 nt | BASIC | 1.39 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | RNU6-1081P-201 | ENST00000384537 | 107 nt | BASIC | 1.39 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | RNU6-205P-201 | ENST00000390858 | 107 nt | BASIC | 1.39 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | RNA5SP95-201 | ENST00000410319 | 137 nt | BASIC | 1.39 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | RNA5SP33-201 | ENST00000516687 | 98 nt | BASIC | 1.39 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | MIR4264-201 | ENST00000583520 | 66 nt | BASIC | 1.39 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | AL359881.1-201 | ENST00000602916 | 267 nt | BASIC | 1.39 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | MIR6734-201 | ENST00000621166 | 68 nt | BASIC | 1.39 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | Y_RNA.330-201 | ENST00000365230 | 109 nt | BASIC | 1.38 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | SNORA80D-201 | ENST00000384488 | 135 nt | BASIC | 1.38 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | RNU6-939P-201 | ENST00000384634 | 107 nt | BASIC | 1.38 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | RPS23P4-201 | ENST00000487908 | 423 nt | BASIC | 1.38 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | SNORD79.1-201 | ENST00000516069 | 84 nt | BASIC | 1.38 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | SNORA70.22-201 | ENST00000517160 | 124 nt | BASIC | 1.38 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | IGHVII-40-1-201 | ENST00000517316 | 58 nt | BASIC | 1.38 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | U6.95-201 | ENST00000636931 | 70 nt | BASIC | 1.38 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | C9orf84-201 | ENST00000318737 | 4661 nt | APPRIS P3 TSL 1 (best) BASIC | 1.38 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | Y_RNA.291-201 | ENST00000364886 | 113 nt | BASIC | 1.37 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | Y_RNA.353-201 | ENST00000365440 | 108 nt | BASIC | 1.37 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | RNU6-342P-201 | ENST00000384521 | 104 nt | BASIC | 1.37 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | RNU6-1237P-201 | ENST00000384777 | 107 nt | BASIC | 1.37 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | MIR618-201 | ENST00000385287 | 98 nt | BASIC | 1.37 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | AL591704.2-201 | ENST00000421658 | 181 nt | BASIC | 1.37 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | snoU13.2-201 | ENST00000459201 | 104 nt | BASIC | 1.37 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | RNU7-21P-201 | ENST00000459430 | 62 nt | BASIC | 1.37 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | SNORD33.1-201 | ENST00000516213 | 88 nt | BASIC | 1.37 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | IGLVVI-22-1-201 | ENST00000521183 | 211 nt | BASIC | 1.37 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | MIR548AE2-201 | ENST00000583456 | 67 nt | BASIC | 1.37 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | Y_RNA.213-201 | ENST00000364178 | 111 nt | BASIC | 1.36 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | SNORA25-201 | ENST00000384384 | 134 nt | BASIC | 1.36 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | SNORA18-201 | ENST00000384416 | 132 nt | BASIC | 1.36 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | MIR588-201 | ENST00000384900 | 83 nt | BASIC | 1.36 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | TRAJ3-201 | ENST00000390534 | 62 nt | APPRIS P1 BASIC | 1.36 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | RNU6-735P-201 | ENST00000410612 | 107 nt | BASIC | 1.36 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | RNA5SP61-201 | ENST00000516453 | 100 nt | BASIC | 1.36 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | MIR7974-201 | ENST00000615835 | 79 nt | BASIC | 1.36 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | MIR6740-201 | ENST00000618268 | 113 nt | BASIC | 1.36 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | MIR377-201 | ENST00000362145 | 69 nt | BASIC | 1.35 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | Y_RNA.299-201 | ENST00000364973 | 94 nt | BASIC | 1.35 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | RNU6-580P-201 | ENST00000365159 | 107 nt | BASIC | 1.35 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | SNORA40.6-201 | ENST00000391153 | 128 nt | BASIC | 1.35 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | RNU4-69P-201 | ENST00000410677 | 143 nt | BASIC | 1.35 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | RNU7-62P-201 | ENST00000458856 | 62 nt | BASIC | 1.35 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | AC004223.1-201 | ENST00000479840 | 271 nt | BASIC | 1.35 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | MIR548AI-201 | ENST00000579940 | 88 nt | BASIC | 1.35 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | SNORA32-201 | ENST00000384072 | 121 nt | BASIC | 1.34 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | MIR759-201 | ENST00000390224 | 91 nt | BASIC | 1.34 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | Y_RNA.649-201 | ENST00000459077 | 103 nt | BASIC | 1.34 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | AC036111.3-201 | ENST00000526389 | 112 nt | BASIC | 1.34 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | MIR3660-201 | ENST00000584845 | 100 nt | BASIC | 1.34 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | AC027335.2-201 | ENST00000624030 | 375 nt | BASIC | 1.34 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | hsa-mir-4536-1.1-201 | ENST00000636519 | 88 nt | BASIC | 1.34 | □□□□□ -2.19 | | |
| BRD9 | Q9H8M2 | Y_RNA.168-201 | ENST00000363740 | 102 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | SNORA2B-201 | ENST00000384583 | 137 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | MIR563-201 | ENST00000385080 | 79 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | MIR548A3-201 | ENST00000385297 | 97 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | MRPL35P3-201 | ENST00000421557 | 364 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | MIR1270-201 | ENST00000459320 | 83 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | RNU7-40P-201 | ENST00000516397 | 64 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | RNU7-6P-201 | ENST00000516845 | 62 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | MIR3163-201 | ENST00000581592 | 73 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | uc_338.6-201 | ENST00000613544 | 171 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | RMST_2.1-201 | ENST00000617263 | 136 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | CEP290-201 | ENST00000309041 | 7616 nt | APPRIS ALT1 TSL 5 BASIC | 1.33 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | AC008163.1-202 | ENST00000636004 | 2889 nt | BASIC | 1.33 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | MIR96-201 | ENST00000362288 | 78 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | SNORD113.3-201 | ENST00000364630 | 78 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | SNORD12-201 | ENST00000391002 | 90 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | RNU6-1165P-201 | ENST00000410119 | 107 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | RNA5SP237-201 | ENST00000410414 | 113 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | RNU7-90P-201 | ENST00000459216 | 62 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | RNU4ATAC11P-201 | ENST00000515939 | 126 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | RNU7-35P-201 | ENST00000517174 | 62 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | AC023827.1-201 | ENST00000569247 | 97 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | AL670379.3-201 | ENST00000605040 | 251 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | AL662814.1-201 | ENST00000617364 | 121 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | AC087741.2-201 | ENST00000619415 | 172 nt | BASIC | 1.32 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | CEP162-202 | ENST00000403245 | 5156 nt | APPRIS P1 TSL 5 BASIC | 1.31 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | RNU6-1290P-201 | ENST00000362957 | 109 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | MIR222-201 | ENST00000384992 | 110 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | MIR548A1-201 | ENST00000385041 | 97 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | RNU7-79P-201 | ENST00000516082 | 62 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | RNA5SP404-201 | ENST00000517118 | 132 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | AC141846.1-201 | ENST00000568348 | 142 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | MTND5P34-201 | ENST00000568888 | 325 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | UGP2-230 | ENST00000626380 | 276 nt | TSL 5 BASIC | 1.31 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | LRRIQ1-202 | ENST00000393217 | 5394 nt | APPRIS P1 TSL 1 (best) BASIC | 1.3 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | MIR30D-201 | ENST00000362283 | 70 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | RNY4P6-201 | ENST00000363667 | 96 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | MIR758-201 | ENST00000390227 | 88 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | RNU6-1064P-201 | ENST00000410626 | 104 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | RNU6-1086P-201 | ENST00000410930 | 100 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | AC002429.1-201 | ENST00000437672 | 148 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | AC106800.4-201 | ENST00000614905 | 153 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | RNU6-834P-201 | ENST00000362367 | 110 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | SNORD114-27-201 | ENST00000363766 | 70 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | RNU1-124P-201 | ENST00000363861 | 145 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| BRD9 | Q9H8M2 | Y_RNA.273-201 | ENST00000364703 | 102 nt | BASIC | 1.29 | □□□□□ -2.2 | | |