Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 MIR563-201ENST00000385080 79 ntBASIC1.63□□□□□ -2.15
CCDC140Q96MF4 HMGN2P38-201ENST00000423806 265 ntBASIC1.63□□□□□ -2.15
CCDC140Q96MF4 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
CCDC140Q96MF4 AC090255.1-201ENST00000495779 349 ntBASIC1.63□□□□□ -2.15
CCDC140Q96MF4 RNU6-537P-201ENST00000517277 103 ntBASIC1.63□□□□□ -2.15
CCDC140Q96MF4 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.63□□□□□ -2.15
CCDC140Q96MF4 SNORA4-201ENST00000584302 138 ntBASIC1.63□□□□□ -2.15
CCDC140Q96MF4 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC1.63□□□□□ -2.15
CCDC140Q96MF4 RNU6-832P-201ENST00000363319 107 ntBASIC1.62□□□□□ -2.15
CCDC140Q96MF4 MRPL35P3-201ENST00000421557 364 ntBASIC1.62□□□□□ -2.15
CCDC140Q96MF4 snoU13.21-201ENST00000459368 105 ntBASIC1.62□□□□□ -2.15
CCDC140Q96MF4 RNU6-904P-201ENST00000516206 101 ntBASIC1.62□□□□□ -2.15
CCDC140Q96MF4 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC1.62□□□□□ -2.15
CCDC140Q96MF4 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC1.61□□□□□ -2.15
CCDC140Q96MF4 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
CCDC140Q96MF4 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
CCDC140Q96MF4 SNORD113.3-201ENST00000364630 78 ntBASIC1.61□□□□□ -2.15
CCDC140Q96MF4 SNORA64-201ENST00000384674 134 ntBASIC1.61□□□□□ -2.15
CCDC140Q96MF4 MIR34C-201ENST00000384831 77 ntBASIC1.61□□□□□ -2.15
CCDC140Q96MF4 U8.15-201ENST00000390947 134 ntBASIC1.61□□□□□ -2.15
CCDC140Q96MF4 AL591704.2-201ENST00000421658 181 ntBASIC1.61□□□□□ -2.15
CCDC140Q96MF4 UBL5P1-201ENST00000507979 193 ntBASIC1.61□□□□□ -2.15
CCDC140Q96MF4 AC108729.3-201ENST00000513484 108 ntBASIC1.61□□□□□ -2.15
CCDC140Q96MF4 Y_RNA.677-201ENST00000516401 85 ntBASIC1.61□□□□□ -2.15
CCDC140Q96MF4 AC133485.1-201ENST00000567176 124 ntBASIC1.61□□□□□ -2.15
CCDC140Q96MF4 MIR4694-201ENST00000578534 80 ntBASIC1.61□□□□□ -2.15
CCDC140Q96MF4 MIR4524B-201ENST00000581569 115 ntBASIC1.61□□□□□ -2.15
CCDC140Q96MF4 MIR377-201ENST00000362145 69 ntBASIC1.6□□□□□ -2.15
CCDC140Q96MF4 Y_RNA.78-201ENST00000362970 110 ntBASIC1.6□□□□□ -2.15
CCDC140Q96MF4 Y_RNA.98-201ENST00000363109 102 ntBASIC1.6□□□□□ -2.15
CCDC140Q96MF4 RNU6-580P-201ENST00000365159 107 ntBASIC1.6□□□□□ -2.15
CCDC140Q96MF4 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.6□□□□□ -2.15
CCDC140Q96MF4 RPS29P28-201ENST00000446439 141 ntBASIC1.6□□□□□ -2.15
CCDC140Q96MF4 AC025033.1-201ENST00000463883 194 ntBASIC1.6□□□□□ -2.15
CCDC140Q96MF4 RNU6-237P-201ENST00000515985 71 ntBASIC1.6□□□□□ -2.15
CCDC140Q96MF4 RNU6-1018P-201ENST00000516577 106 ntBASIC1.6□□□□□ -2.15
CCDC140Q96MF4 SNORA70.22-201ENST00000517160 124 ntBASIC1.6□□□□□ -2.15
CCDC140Q96MF4 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.6□□□□□ -2.15
CCDC140Q96MF4 AL442128.1-201ENST00000615151 90 ntBASIC1.6□□□□□ -2.15
CCDC140Q96MF4 Y_RNA.168-201ENST00000363740 102 ntBASIC1.59□□□□□ -2.15
CCDC140Q96MF4 RNA5SP160-201ENST00000364866 120 ntBASIC1.59□□□□□ -2.15
CCDC140Q96MF4 RNU6-1201P-201ENST00000384227 107 ntBASIC1.59□□□□□ -2.15
CCDC140Q96MF4 SNORA80D-201ENST00000384488 135 ntBASIC1.59□□□□□ -2.15
CCDC140Q96MF4 SNORD93-201ENST00000408813 74 ntBASIC1.59□□□□□ -2.15
CCDC140Q96MF4 SNORD83.1-201ENST00000411362 77 ntBASIC1.59□□□□□ -2.15
CCDC140Q96MF4 RNU7-48P-201ENST00000458875 63 ntBASIC1.59□□□□□ -2.15
CCDC140Q96MF4 RNU6-717P-201ENST00000459076 104 ntBASIC1.59□□□□□ -2.15
CCDC140Q96MF4 Y_RNA.659-201ENST00000515994 113 ntBASIC1.59□□□□□ -2.15
CCDC140Q96MF4 AC036111.3-201ENST00000526389 112 ntBASIC1.59□□□□□ -2.15
CCDC140Q96MF4 MIR376B-201ENST00000614515 100 ntBASIC1.59□□□□□ -2.15
CCDC140Q96MF4 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.58□□□□□ -2.16
CCDC140Q96MF4 RNU6-1313P-201ENST00000362622 102 ntBASIC1.58□□□□□ -2.16
CCDC140Q96MF4 RNU4-52P-201ENST00000384209 138 ntBASIC1.58□□□□□ -2.16
CCDC140Q96MF4 MIR222-201ENST00000384992 110 ntBASIC1.58□□□□□ -2.16
CCDC140Q96MF4 RNU6-447P-201ENST00000410293 104 ntBASIC1.58□□□□□ -2.16
CCDC140Q96MF4 RNU6-1118P-201ENST00000410382 104 ntBASIC1.58□□□□□ -2.16
CCDC140Q96MF4 RNU6-1076P-201ENST00000410397 104 ntBASIC1.58□□□□□ -2.16
CCDC140Q96MF4 RNU6-355P-201ENST00000410427 104 ntBASIC1.58□□□□□ -2.16
CCDC140Q96MF4 RNU6-791P-201ENST00000410467 104 ntBASIC1.58□□□□□ -2.16
CCDC140Q96MF4 RNU6-705P-201ENST00000410601 104 ntBASIC1.58□□□□□ -2.16
CCDC140Q96MF4 RNU6-1100P-201ENST00000410691 104 ntBASIC1.58□□□□□ -2.16
CCDC140Q96MF4 RNU6-860P-201ENST00000410860 104 ntBASIC1.58□□□□□ -2.16
CCDC140Q96MF4 RNU6-1217P-201ENST00000411276 104 ntBASIC1.58□□□□□ -2.16
CCDC140Q96MF4 RNU6-785P-201ENST00000411324 104 ntBASIC1.58□□□□□ -2.16
CCDC140Q96MF4 AC015818.7-201ENST00000428754 109 ntBASIC1.58□□□□□ -2.16
CCDC140Q96MF4 AC087499.7-201ENST00000441958 109 ntBASIC1.58□□□□□ -2.16
CCDC140Q96MF4 RNU7-21P-201ENST00000459430 62 ntBASIC1.58□□□□□ -2.16
CCDC140Q96MF4 SCARNA23-201ENST00000516060 130 ntBASIC1.58□□□□□ -2.16
CCDC140Q96MF4 RNU6-795P-201ENST00000516323 103 ntBASIC1.58□□□□□ -2.16
CCDC140Q96MF4 U6.90-201ENST00000614007 104 ntBASIC1.58□□□□□ -2.16
CCDC140Q96MF4 AP001318.4-201ENST00000616637 121 ntBASIC1.58□□□□□ -2.16
CCDC140Q96MF4 AC012676.2-201ENST00000619258 186 ntBASIC1.58□□□□□ -2.16
CCDC140Q96MF4 U6.70-201ENST00000620287 104 ntBASIC1.58□□□□□ -2.16
CCDC140Q96MF4 MIR219B-201ENST00000637023 88 ntBASIC1.58□□□□□ -2.16
CCDC140Q96MF4 AC008163.1-202ENST00000636004 2889 ntBASIC1.58□□□□□ -2.16
CCDC140Q96MF4 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
CCDC140Q96MF4 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
CCDC140Q96MF4 Y_RNA.10-201ENST00000362371 110 ntBASIC1.57□□□□□ -2.16
CCDC140Q96MF4 Y_RNA.247-201ENST00000364500 92 ntBASIC1.57□□□□□ -2.16
CCDC140Q96MF4 RNU6-934P-201ENST00000365154 107 ntBASIC1.57□□□□□ -2.16
CCDC140Q96MF4 Y_RNA.544-201ENST00000384650 113 ntBASIC1.57□□□□□ -2.16
CCDC140Q96MF4 Y_RNA.601-201ENST00000410500 113 ntBASIC1.57□□□□□ -2.16
CCDC140Q96MF4 MIR18B-201ENST00000454574 71 ntBASIC1.57□□□□□ -2.16
CCDC140Q96MF4 AC096720.1-201ENST00000604441 183 ntBASIC1.57□□□□□ -2.16
CCDC140Q96MF4 Y_RNA.783-201ENST00000613546 102 ntBASIC1.57□□□□□ -2.16
CCDC140Q96MF4 AC023934.1-201ENST00000574529 2389 ntBASIC1.57□□□□□ -2.16
CCDC140Q96MF4 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.57□□□□□ -2.16
CCDC140Q96MF4 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.56□□□□□ -2.16
CCDC140Q96MF4 SNORD114-1-201ENST00000362705 72 ntBASIC1.56□□□□□ -2.16
CCDC140Q96MF4 MT-TF-201ENST00000387314 71 ntBASIC1.56□□□□□ -2.16
CCDC140Q96MF4 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.56□□□□□ -2.16
CCDC140Q96MF4 RNA5SP338-201ENST00000410495 85 ntBASIC1.56□□□□□ -2.16
CCDC140Q96MF4 RNU7-90P-201ENST00000459216 62 ntBASIC1.56□□□□□ -2.16
CCDC140Q96MF4 SNORD79.1-201ENST00000516069 84 ntBASIC1.56□□□□□ -2.16
CCDC140Q96MF4 SNORA40.13-201ENST00000516379 120 ntBASIC1.56□□□□□ -2.16
CCDC140Q96MF4 MIR4769-201ENST00000584126 77 ntBASIC1.56□□□□□ -2.16
CCDC140Q96MF4 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.56□□□□□ -2.16
CCDC140Q96MF4 U6.109-201ENST00000636749 87 ntBASIC1.56□□□□□ -2.16
CCDC140Q96MF4 RNA5SP327-201ENST00000362494 101 ntBASIC1.55□□□□□ -2.16
CCDC140Q96MF4 MIR1289-2-201ENST00000408360 111 ntBASIC1.55□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 126.6 ms