Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
CHFRQ96EP1 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
CHFRQ96EP1 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
CHFRQ96EP1 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.93□□□□□ -2.1
CHFRQ96EP1 RNU6-1244P-201ENST00000363614 108 ntBASIC1.93□□□□□ -2.1
CHFRQ96EP1 RNU6-457P-201ENST00000363999 107 ntBASIC1.93□□□□□ -2.1
CHFRQ96EP1 Y_RNA.370-201ENST00000365589 108 ntBASIC1.93□□□□□ -2.1
CHFRQ96EP1 RNU6-342P-201ENST00000384521 104 ntBASIC1.93□□□□□ -2.1
CHFRQ96EP1 MIR34C-201ENST00000384831 77 ntBASIC1.93□□□□□ -2.1
CHFRQ96EP1 MIR206-201ENST00000384872 86 ntBASIC1.93□□□□□ -2.1
CHFRQ96EP1 SNORD28B-201ENST00000390993 75 ntBASIC1.93□□□□□ -2.1
CHFRQ96EP1 RPL31P63-201ENST00000422565 375 ntBASIC1.93□□□□□ -2.1
CHFRQ96EP1 RPS29P29-201ENST00000456396 171 ntBASIC1.93□□□□□ -2.1
CHFRQ96EP1 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.93□□□□□ -2.1
CHFRQ96EP1 SNORD13-201ENST00000459299 104 ntBASIC1.93□□□□□ -2.1
CHFRQ96EP1 RNA5SP168-201ENST00000516642 112 ntBASIC1.93□□□□□ -2.1
CHFRQ96EP1 MIR4498-201ENST00000577599 66 ntBASIC1.93□□□□□ -2.1
CHFRQ96EP1 AC012493.3-201ENST00000604494 112 ntBASIC1.93□□□□□ -2.1
CHFRQ96EP1 SNORA28-201ENST00000606769 126 ntBASIC1.93□□□□□ -2.1
CHFRQ96EP1 MIR8081-201ENST00000611533 95 ntBASIC1.93□□□□□ -2.1
CHFRQ96EP1 uc_338.20-201ENST00000621563 178 ntBASIC1.93□□□□□ -2.1
CHFRQ96EP1 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.93□□□□□ -2.1
CHFRQ96EP1 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.93□□□□□ -2.1
CHFRQ96EP1 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.92□□□□□ -2.1
CHFRQ96EP1 Y_RNA.164-201ENST00000363709 102 ntBASIC1.92□□□□□ -2.1
CHFRQ96EP1 SNORD38.1-201ENST00000363863 68 ntBASIC1.92□□□□□ -2.1
CHFRQ96EP1 Y_RNA.565-201ENST00000384719 101 ntBASIC1.92□□□□□ -2.1
CHFRQ96EP1 HMGN1P33-201ENST00000432945 451 ntBASIC1.92□□□□□ -2.1
CHFRQ96EP1 RNU7-67P-201ENST00000459003 62 ntBASIC1.92□□□□□ -2.1
CHFRQ96EP1 DNAJC19P9-201ENST00000555084 351 ntBASIC1.92□□□□□ -2.1
CHFRQ96EP1 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.92□□□□□ -2.1
CHFRQ96EP1 RNU6-23P-201ENST00000363283 107 ntBASIC1.91□□□□□ -2.1
CHFRQ96EP1 RNA5SP190-201ENST00000365222 118 ntBASIC1.91□□□□□ -2.1
CHFRQ96EP1 RNU7-73P-201ENST00000458743 63 ntBASIC1.91□□□□□ -2.1
CHFRQ96EP1 RNU7-53P-201ENST00000516705 60 ntBASIC1.91□□□□□ -2.1
CHFRQ96EP1 MIR548AR-201ENST00000582191 57 ntBASIC1.91□□□□□ -2.1
CHFRQ96EP1 MIR3935-201ENST00000583472 104 ntBASIC1.91□□□□□ -2.1
CHFRQ96EP1 AC084768.2-201ENST00000622736 221 ntBASIC1.91□□□□□ -2.1
CHFRQ96EP1 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.9□□□□□ -2.1
CHFRQ96EP1 SNORA1.2-201ENST00000365189 134 ntBASIC1.9□□□□□ -2.11
CHFRQ96EP1 BX510359.4-201ENST00000423750 193 ntBASIC1.9□□□□□ -2.11
CHFRQ96EP1 AC093850.1-201ENST00000454121 251 ntBASIC1.9□□□□□ -2.11
CHFRQ96EP1 RNU1-98P-201ENST00000458992 160 ntBASIC1.9□□□□□ -2.11
CHFRQ96EP1 SNORA25.15-201ENST00000516487 89 ntBASIC1.9□□□□□ -2.11
CHFRQ96EP1 RNU6-250P-201ENST00000516958 103 ntBASIC1.9□□□□□ -2.11
CHFRQ96EP1 RNU7-35P-201ENST00000517174 62 ntBASIC1.9□□□□□ -2.11
CHFRQ96EP1 RNU1-58P-201ENST00000362413 163 ntBASIC1.89□□□□□ -2.11
CHFRQ96EP1 SNORA70.7-201ENST00000384159 133 ntBASIC1.89□□□□□ -2.11
CHFRQ96EP1 Y_RNA.567-201ENST00000384736 106 ntBASIC1.89□□□□□ -2.11
CHFRQ96EP1 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
CHFRQ96EP1 AL161932.1-201ENST00000437408 146 ntBASIC1.89□□□□□ -2.11
CHFRQ96EP1 RNU7-12P-201ENST00000516030 62 ntBASIC1.89□□□□□ -2.11
CHFRQ96EP1 RNA5SP364-201ENST00000516938 78 ntBASIC1.89□□□□□ -2.11
CHFRQ96EP1 AC140658.3-201ENST00000567603 271 ntBASIC1.89□□□□□ -2.11
CHFRQ96EP1 AC005786.1-201ENST00000588553 154 ntBASIC1.89□□□□□ -2.11
CHFRQ96EP1 AC243994.1-201ENST00000618627 109 ntBASIC1.89□□□□□ -2.11
CHFRQ96EP1 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
CHFRQ96EP1 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
CHFRQ96EP1 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
CHFRQ96EP1 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
CHFRQ96EP1 RNU6-1019P-201ENST00000364424 107 ntBASIC1.88□□□□□ -2.11
CHFRQ96EP1 MIR526A1-201ENST00000384897 85 ntBASIC1.88□□□□□ -2.11
CHFRQ96EP1 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
CHFRQ96EP1 SUMO2P12-201ENST00000405924 140 ntBASIC1.88□□□□□ -2.11
CHFRQ96EP1 MIR548G-201ENST00000408442 89 ntBASIC1.88□□□□□ -2.11
CHFRQ96EP1 RNA5SP261-201ENST00000410536 106 ntBASIC1.88□□□□□ -2.11
CHFRQ96EP1 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.88□□□□□ -2.11
CHFRQ96EP1 AC093729.1-201ENST00000513074 128 ntBASIC1.88□□□□□ -2.11
CHFRQ96EP1 SNORD67.1-201ENST00000516618 108 ntBASIC1.88□□□□□ -2.11
CHFRQ96EP1 AL513043.2-201ENST00000573941 143 ntBASIC1.88□□□□□ -2.11
CHFRQ96EP1 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.88□□□□□ -2.11
CHFRQ96EP1 AC145423.2-201ENST00000610631 239 ntBASIC1.88□□□□□ -2.11
CHFRQ96EP1 MIR8055-201ENST00000610739 97 ntBASIC1.88□□□□□ -2.11
CHFRQ96EP1 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
CHFRQ96EP1 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
CHFRQ96EP1 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.87□□□□□ -2.11
CHFRQ96EP1 Y_RNA.173-201ENST00000363776 113 ntBASIC1.87□□□□□ -2.11
CHFRQ96EP1 Y_RNA.448-201ENST00000384185 108 ntBASIC1.87□□□□□ -2.11
CHFRQ96EP1 MIR452-201ENST00000385020 85 ntBASIC1.87□□□□□ -2.11
CHFRQ96EP1 MIR519C-201ENST00000385053 87 ntBASIC1.87□□□□□ -2.11
CHFRQ96EP1 MIR136-201ENST00000385207 82 ntBASIC1.87□□□□□ -2.11
CHFRQ96EP1 AL034345.1-201ENST00000407768 123 ntBASIC1.87□□□□□ -2.11
CHFRQ96EP1 RNU6ATAC41P-201ENST00000408600 126 ntBASIC1.87□□□□□ -2.11
CHFRQ96EP1 RNA5SP247-201ENST00000411181 105 ntBASIC1.87□□□□□ -2.11
CHFRQ96EP1 RPS29P28-201ENST00000446439 141 ntBASIC1.87□□□□□ -2.11
CHFRQ96EP1 SNORD123-201ENST00000459473 70 ntBASIC1.87□□□□□ -2.11
CHFRQ96EP1 AC008834.1-201ENST00000511612 175 ntBASIC1.87□□□□□ -2.11
CHFRQ96EP1 MIR3198-2-201ENST00000577868 80 ntBASIC1.87□□□□□ -2.11
CHFRQ96EP1 MIR4255-201ENST00000579351 72 ntBASIC1.87□□□□□ -2.11
CHFRQ96EP1 MIR8065-201ENST00000620577 100 ntBASIC1.87□□□□□ -2.11
CHFRQ96EP1 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
CHFRQ96EP1 RNU6-1031P-201ENST00000384773 107 ntBASIC1.86□□□□□ -2.11
CHFRQ96EP1 RNU6-1321P-201ENST00000390905 107 ntBASIC1.86□□□□□ -2.11
CHFRQ96EP1 AC245047.7-201ENST00000440265 293 ntBASIC1.86□□□□□ -2.11
CHFRQ96EP1 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC1.86□□□□□ -2.11
CHFRQ96EP1 RNU6-523P-201ENST00000516304 54 ntBASIC1.86□□□□□ -2.11
CHFRQ96EP1 MIR5094-201ENST00000578766 85 ntBASIC1.86□□□□□ -2.11
CHFRQ96EP1 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.86□□□□□ -2.11
CHFRQ96EP1 AC069114.2-201ENST00000604699 304 ntBASIC1.86□□□□□ -2.11
CHFRQ96EP1 RNU6-90P-201ENST00000606352 106 ntBASIC1.86□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 223.2 ms