Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 RNU6-349P-201ENST00000362402 107 ntBASIC0.21□□□□□ -2.38
RPUSD4Q96CM3 SNORA36.1-201ENST00000363424 132 ntBASIC0.21□□□□□ -2.38
RPUSD4Q96CM3 RNU6-923P-201ENST00000364753 107 ntBASIC0.21□□□□□ -2.38
RPUSD4Q96CM3 Y_RNA.393-201ENST00000383936 102 ntBASIC0.21□□□□□ -2.38
RPUSD4Q96CM3 SNORA18-201ENST00000384416 132 ntBASIC0.21□□□□□ -2.38
RPUSD4Q96CM3 RNU6-679P-201ENST00000391003 106 ntBASIC0.21□□□□□ -2.38
RPUSD4Q96CM3 RNA5SP144-201ENST00000410846 116 ntBASIC0.21□□□□□ -2.38
RPUSD4Q96CM3 AL512326.2-201ENST00000426359 151 ntBASIC0.21□□□□□ -2.38
RPUSD4Q96CM3 RPL39P25-201ENST00000449384 154 ntBASIC0.21□□□□□ -2.38
RPUSD4Q96CM3 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.21□□□□□ -2.38
RPUSD4Q96CM3 SNORA25.12-201ENST00000516202 82 ntBASIC0.21□□□□□ -2.38
RPUSD4Q96CM3 Y_RNA.673-201ENST00000516306 88 ntBASIC0.21□□□□□ -2.38
RPUSD4Q96CM3 RNU6-1258P-201ENST00000516911 111 ntBASIC0.21□□□□□ -2.38
RPUSD4Q96CM3 MIR6734-201ENST00000621166 68 ntBASIC0.21□□□□□ -2.38
RPUSD4Q96CM3 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.21□□□□□ -2.38
RPUSD4Q96CM3 MTND5P32-201ENST00000560711 1802 ntBASIC0.21□□□□□ -2.38
RPUSD4Q96CM3 Y_RNA.65-201ENST00000362846 100 ntBASIC0.2□□□□□ -2.38
RPUSD4Q96CM3 RNU6-1099P-201ENST00000363533 107 ntBASIC0.2□□□□□ -2.38
RPUSD4Q96CM3 Y_RNA.193-201ENST00000363979 102 ntBASIC0.2□□□□□ -2.38
RPUSD4Q96CM3 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.2□□□□□ -2.38
RPUSD4Q96CM3 SCARNA15.1-201ENST00000516384 125 ntBASIC0.2□□□□□ -2.38
RPUSD4Q96CM3 AC133485.4-201ENST00000561835 220 ntBASIC0.2□□□□□ -2.38
RPUSD4Q96CM3 MIR3128-201ENST00000581957 66 ntBASIC0.2□□□□□ -2.38
RPUSD4Q96CM3 MIR5093-201ENST00000583199 100 ntBASIC0.2□□□□□ -2.38
RPUSD4Q96CM3 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.2□□□□□ -2.38
RPUSD4Q96CM3 AC011603.4-201ENST00000611325 277 ntBASIC0.2□□□□□ -2.38
RPUSD4Q96CM3 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.2□□□□□ -2.38
RPUSD4Q96CM3 U6.106-201ENST00000636360 105 ntBASIC0.2□□□□□ -2.38
RPUSD4Q96CM3 Y_RNA.52-201ENST00000362760 96 ntBASIC0.19□□□□□ -2.38
RPUSD4Q96CM3 RNU6-312P-201ENST00000364629 107 ntBASIC0.19□□□□□ -2.38
RPUSD4Q96CM3 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.19□□□□□ -2.38
RPUSD4Q96CM3 SNRPGP12-201ENST00000449481 213 ntBASIC0.19□□□□□ -2.38
RPUSD4Q96CM3 RNU6-848P-201ENST00000515948 107 ntBASIC0.19□□□□□ -2.38
RPUSD4Q96CM3 RNU6-617P-201ENST00000516147 107 ntBASIC0.19□□□□□ -2.38
RPUSD4Q96CM3 RNU6-473P-201ENST00000516164 107 ntBASIC0.19□□□□□ -2.38
RPUSD4Q96CM3 RNU6-469P-201ENST00000516253 101 ntBASIC0.19□□□□□ -2.38
RPUSD4Q96CM3 RNU6-1049P-201ENST00000516414 107 ntBASIC0.19□□□□□ -2.38
RPUSD4Q96CM3 Y_RNA.680-201ENST00000516441 93 ntBASIC0.19□□□□□ -2.38
RPUSD4Q96CM3 MIR411-201ENST00000362239 96 ntBASIC0.18□□□□□ -2.38
RPUSD4Q96CM3 Y_RNA.32-201ENST00000362589 110 ntBASIC0.18□□□□□ -2.38
RPUSD4Q96CM3 Y_RNA.162-201ENST00000363683 102 ntBASIC0.18□□□□□ -2.38
RPUSD4Q96CM3 VTRNA1-3-201ENST00000365645 89 ntBASIC0.18□□□□□ -2.38
RPUSD4Q96CM3 Y_RNA.536-201ENST00000384621 113 ntBASIC0.18□□□□□ -2.38
RPUSD4Q96CM3 Y_RNA.567-201ENST00000384736 106 ntBASIC0.18□□□□□ -2.38
RPUSD4Q96CM3 Y_RNA.617-201ENST00000410920 90 ntBASIC0.18□□□□□ -2.38
RPUSD4Q96CM3 MTND3P2-201ENST00000438452 342 ntBASIC0.18□□□□□ -2.38
RPUSD4Q96CM3 RNU6-111P-201ENST00000517179 105 ntBASIC0.18□□□□□ -2.38
RPUSD4Q96CM3 Y_RNA.60-201ENST00000362831 98 ntBASIC0.17□□□□□ -2.38
RPUSD4Q96CM3 Y_RNA.200-201ENST00000364018 102 ntBASIC0.17□□□□□ -2.38
RPUSD4Q96CM3 RNU6-702P-201ENST00000364982 107 ntBASIC0.17□□□□□ -2.38
RPUSD4Q96CM3 Y_RNA.357-201ENST00000365487 109 ntBASIC0.17□□□□□ -2.38
RPUSD4Q96CM3 Y_RNA.447-201ENST00000384184 113 ntBASIC0.17□□□□□ -2.38
RPUSD4Q96CM3 Y_RNA.452-201ENST00000384202 108 ntBASIC0.17□□□□□ -2.38
RPUSD4Q96CM3 Y_RNA.477-201ENST00000384352 108 ntBASIC0.17□□□□□ -2.38
RPUSD4Q96CM3 RNU6-291P-201ENST00000384720 107 ntBASIC0.17□□□□□ -2.38
RPUSD4Q96CM3 MIR1295A-201ENST00000408463 79 ntBASIC0.17□□□□□ -2.38
RPUSD4Q96CM3 RNU2-59P-201ENST00000410482 191 ntBASIC0.17□□□□□ -2.38
RPUSD4Q96CM3 RNU7-79P-201ENST00000516082 62 ntBASIC0.17□□□□□ -2.38
RPUSD4Q96CM3 SNORA31.14-201ENST00000516728 116 ntBASIC0.17□□□□□ -2.38
RPUSD4Q96CM3 SCARNA16.5-201ENST00000517114 183 ntBASIC0.17□□□□□ -2.38
RPUSD4Q96CM3 RNA5SP47-201ENST00000517230 109 ntBASIC0.17□□□□□ -2.38
RPUSD4Q96CM3 MIR4711-201ENST00000578274 70 ntBASIC0.17□□□□□ -2.38
RPUSD4Q96CM3 MIR4639-201ENST00000584938 69 ntBASIC0.17□□□□□ -2.38
RPUSD4Q96CM3 AC009779.6-201ENST00000603972 165 ntBASIC0.17□□□□□ -2.38
RPUSD4Q96CM3 SNORA25.18-201ENST00000607153 114 ntBASIC0.17□□□□□ -2.38
RPUSD4Q96CM3 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.16□□□□□ -2.38
RPUSD4Q96CM3 RNU6-403P-201ENST00000363163 104 ntBASIC0.16□□□□□ -2.38
RPUSD4Q96CM3 Y_RNA.171-201ENST00000363760 102 ntBASIC0.16□□□□□ -2.38
RPUSD4Q96CM3 RNU4-16P-201ENST00000364737 141 ntBASIC0.16□□□□□ -2.38
RPUSD4Q96CM3 SNORA20.1-201ENST00000364790 130 ntBASIC0.16□□□□□ -2.38
RPUSD4Q96CM3 MIR644A-201ENST00000385262 94 ntBASIC0.16□□□□□ -2.38
RPUSD4Q96CM3 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.16□□□□□ -2.38
RPUSD4Q96CM3 AL022718.1-201ENST00000412004 84 ntBASIC0.16□□□□□ -2.38
RPUSD4Q96CM3 AL118496.2-201ENST00000448300 230 ntBASIC0.16□□□□□ -2.38
RPUSD4Q96CM3 AC107027.2-201ENST00000512197 115 ntBASIC0.16□□□□□ -2.38
RPUSD4Q96CM3 RNA5SP268-201ENST00000516828 124 ntBASIC0.16□□□□□ -2.38
RPUSD4Q96CM3 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.16□□□□□ -2.38
RPUSD4Q96CM3 MIR3646-201ENST00000578301 84 ntBASIC0.16□□□□□ -2.38
RPUSD4Q96CM3 MIR4315-1-201ENST00000636800 73 ntBASIC0.16□□□□□ -2.38
RPUSD4Q96CM3 MIR4315-2-201ENST00000640925 73 ntBASIC0.16□□□□□ -2.38
RPUSD4Q96CM3 Y_RNA.83-201ENST00000363005 113 ntBASIC0.15□□□□□ -2.39
RPUSD4Q96CM3 Y_RNA.120-201ENST00000363304 110 ntBASIC0.15□□□□□ -2.39
RPUSD4Q96CM3 Y_RNA.337-201ENST00000365312 102 ntBASIC0.15□□□□□ -2.39
RPUSD4Q96CM3 RNU6-42P-201ENST00000384165 107 ntBASIC0.15□□□□□ -2.39
RPUSD4Q96CM3 Y_RNA.521-201ENST00000384560 114 ntBASIC0.15□□□□□ -2.39
RPUSD4Q96CM3 RNU6-768P-201ENST00000384683 107 ntBASIC0.15□□□□□ -2.39
RPUSD4Q96CM3 SNORA75.5-201ENST00000391291 81 ntBASIC0.15□□□□□ -2.39
RPUSD4Q96CM3 MIR936-201ENST00000401264 98 ntBASIC0.15□□□□□ -2.39
RPUSD4Q96CM3 RNU7-113P-201ENST00000459273 62 ntBASIC0.15□□□□□ -2.39
RPUSD4Q96CM3 MIR4503-201ENST00000582187 83 ntBASIC0.15□□□□□ -2.39
RPUSD4Q96CM3 RNU4-58P-201ENST00000363192 141 ntBASIC0.14□□□□□ -2.39
RPUSD4Q96CM3 RNA5SP62-201ENST00000363457 110 ntBASIC0.14□□□□□ -2.39
RPUSD4Q96CM3 RNU6-1020P-201ENST00000363684 107 ntBASIC0.14□□□□□ -2.39
RPUSD4Q96CM3 Y_RNA.470-201ENST00000384307 117 ntBASIC0.14□□□□□ -2.39
RPUSD4Q96CM3 SNORD28-201ENST00000384706 75 ntBASIC0.14□□□□□ -2.39
RPUSD4Q96CM3 AC069113.3-201ENST00000521019 150 ntBASIC0.14□□□□□ -2.39
RPUSD4Q96CM3 AC112693.2-201ENST00000556538 232 ntBASIC0.14□□□□□ -2.39
RPUSD4Q96CM3 AC098479.1-201ENST00000609225 154 ntBASIC0.14□□□□□ -2.39
RPUSD4Q96CM3 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.14□□□□□ -2.39
RPUSD4Q96CM3 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.14□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 279.6 ms