Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 RNU6-1156P-201ENST00000410365 100 ntBASIC-1.23□□□□□ -2.61
CSPG4Q6UVK1 AC018880.2-201ENST00000414265 201 ntBASIC-1.23□□□□□ -2.61
CSPG4Q6UVK1 RNU7-87P-201ENST00000459343 62 ntBASIC-1.23□□□□□ -2.61
CSPG4Q6UVK1 AP001542.1-201ENST00000591314 200 ntBASIC-1.23□□□□□ -2.61
CSPG4Q6UVK1 AC091932.4-201ENST00000623386 200 ntBASIC-1.23□□□□□ -2.61
CSPG4Q6UVK1 Y_RNA.91-201ENST00000363042 107 ntBASIC-1.23□□□□□ -2.61
CSPG4Q6UVK1 RNA5SP405-201ENST00000363059 114 ntBASIC-1.23□□□□□ -2.61
CSPG4Q6UVK1 Y_RNA.313-201ENST00000365095 103 ntBASIC-1.23□□□□□ -2.61
CSPG4Q6UVK1 RNU6-842P-201ENST00000384269 107 ntBASIC-1.23□□□□□ -2.61
CSPG4Q6UVK1 Y_RNA.515-201ENST00000384535 112 ntBASIC-1.23□□□□□ -2.61
CSPG4Q6UVK1 AL590004.1-201ENST00000405321 300 ntBASIC-1.23□□□□□ -2.61
CSPG4Q6UVK1 SNORD63B-201ENST00000411005 70 ntBASIC-1.23□□□□□ -2.61
CSPG4Q6UVK1 RNU6-759P-201ENST00000516740 103 ntBASIC-1.23□□□□□ -2.61
CSPG4Q6UVK1 Y_RNA.66-201ENST00000362862 102 ntBASIC-1.24□□□□□ -2.61
CSPG4Q6UVK1 RNU6-931P-201ENST00000363850 107 ntBASIC-1.24□□□□□ -2.61
CSPG4Q6UVK1 RNU6-522P-201ENST00000364497 107 ntBASIC-1.24□□□□□ -2.61
CSPG4Q6UVK1 RNY3P4-201ENST00000384428 101 ntBASIC-1.24□□□□□ -2.61
CSPG4Q6UVK1 RNU6-1242P-201ENST00000391052 103 ntBASIC-1.24□□□□□ -2.61
CSPG4Q6UVK1 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC-1.24□□□□□ -2.61
CSPG4Q6UVK1 RNU2-31P-201ENST00000516954 155 ntBASIC-1.24□□□□□ -2.61
CSPG4Q6UVK1 RNU6-365P-201ENST00000517113 106 ntBASIC-1.24□□□□□ -2.61
CSPG4Q6UVK1 AC024909.2-201ENST00000553035 286 ntBASIC-1.24□□□□□ -2.61
CSPG4Q6UVK1 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC-1.24□□□□□ -2.61
CSPG4Q6UVK1 SNORA2.1-201ENST00000363089 137 ntBASIC-1.24□□□□□ -2.61
CSPG4Q6UVK1 Y_RNA.105-201ENST00000363182 111 ntBASIC-1.24□□□□□ -2.61
CSPG4Q6UVK1 RNU6-899P-201ENST00000363947 107 ntBASIC-1.24□□□□□ -2.61
CSPG4Q6UVK1 RNU6-596P-201ENST00000365395 98 ntBASIC-1.24□□□□□ -2.61
CSPG4Q6UVK1 Y_RNA.454-201ENST00000384224 113 ntBASIC-1.24□□□□□ -2.61
CSPG4Q6UVK1 AL078595.1-201ENST00000404458 226 ntBASIC-1.24□□□□□ -2.61
CSPG4Q6UVK1 MIR5197-201ENST00000583721 112 ntBASIC-1.24□□□□□ -2.61
CSPG4Q6UVK1 AL365205.2-201ENST00000594586 68 ntBASIC-1.24□□□□□ -2.61
CSPG4Q6UVK1 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC-1.24□□□□□ -2.61
CSPG4Q6UVK1 Y_RNA.247-201ENST00000364500 92 ntBASIC-1.25□□□□□ -2.61
CSPG4Q6UVK1 SNORA62.4-201ENST00000365504 151 ntBASIC-1.25□□□□□ -2.61
CSPG4Q6UVK1 RNU6-1257P-201ENST00000384625 110 ntBASIC-1.25□□□□□ -2.61
CSPG4Q6UVK1 RNU6-1158P-201ENST00000391167 107 ntBASIC-1.25□□□□□ -2.61
CSPG4Q6UVK1 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC-1.25□□□□□ -2.61
CSPG4Q6UVK1 MTND1P34-201ENST00000438556 671 ntBASIC-1.25□□□□□ -2.61
CSPG4Q6UVK1 AL033528.1-201ENST00000453780 140 ntBASIC-1.25□□□□□ -2.61
CSPG4Q6UVK1 RNU7-48P-201ENST00000458875 63 ntBASIC-1.25□□□□□ -2.61
CSPG4Q6UVK1 RNU6-1038P-201ENST00000516516 104 ntBASIC-1.25□□□□□ -2.61
CSPG4Q6UVK1 MIR4756-201ENST00000577874 78 ntBASIC-1.25□□□□□ -2.61
CSPG4Q6UVK1 AP000240.1-201ENST00000609910 452 ntBASIC-1.25□□□□□ -2.61
CSPG4Q6UVK1 AC133104.2-201ENST00000615272 193 ntBASIC-1.25□□□□□ -2.61
CSPG4Q6UVK1 AC021613.1-201ENST00000623880 111 ntBASIC-1.25□□□□□ -2.61
CSPG4Q6UVK1 RNU6-874P-201ENST00000362390 105 ntBASIC-1.26□□□□□ -2.61
CSPG4Q6UVK1 SNORD115-33-201ENST00000363723 82 ntBASIC-1.26□□□□□ -2.61
CSPG4Q6UVK1 RNU6-54P-201ENST00000365563 107 ntBASIC-1.26□□□□□ -2.61
CSPG4Q6UVK1 RNU6-746P-201ENST00000384112 109 ntBASIC-1.26□□□□□ -2.61
CSPG4Q6UVK1 RNU6-1254P-201ENST00000391266 104 ntBASIC-1.26□□□□□ -2.61
CSPG4Q6UVK1 RPS29P25-201ENST00000481709 171 ntBASIC-1.26□□□□□ -2.61
CSPG4Q6UVK1 MIR4724-201ENST00000579485 89 ntBASIC-1.26□□□□□ -2.61
CSPG4Q6UVK1 AL359881.1-201ENST00000602916 267 ntBASIC-1.26□□□□□ -2.61
CSPG4Q6UVK1 AC005014.3-201ENST00000605985 190 ntBASIC-1.26□□□□□ -2.61
CSPG4Q6UVK1 AL021368.1-201ENST00000607490 540 ntBASIC-1.26□□□□□ -2.61
CSPG4Q6UVK1 RNU6-170P-201ENST00000362832 104 ntBASIC-1.26□□□□□ -2.61
CSPG4Q6UVK1 RNU6-957P-201ENST00000363652 99 ntBASIC-1.26□□□□□ -2.61
CSPG4Q6UVK1 SNORD115-20-201ENST00000365099 82 ntBASIC-1.26□□□□□ -2.61
CSPG4Q6UVK1 Y_RNA.473-201ENST00000384333 102 ntBASIC-1.26□□□□□ -2.61
CSPG4Q6UVK1 Y_RNA.531-201ENST00000384589 121 ntBASIC-1.26□□□□□ -2.61
CSPG4Q6UVK1 SNORD63.1-201ENST00000516178 80 ntBASIC-1.26□□□□□ -2.61
CSPG4Q6UVK1 RNU6-155P-201ENST00000516347 100 ntBASIC-1.26□□□□□ -2.61
CSPG4Q6UVK1 Y_RNA.704-201ENST00000516851 102 ntBASIC-1.26□□□□□ -2.61
CSPG4Q6UVK1 MIR3913-1-201ENST00000577744 102 ntBASIC-1.26□□□□□ -2.61
CSPG4Q6UVK1 AC024933.1-201ENST00000608472 348 ntBASIC-1.26□□□□□ -2.61
CSPG4Q6UVK1 RNU6-664P-201ENST00000362381 107 ntBASIC-1.27□□□□□ -2.61
CSPG4Q6UVK1 SNORD36A-201ENST00000362874 73 ntBASIC-1.27□□□□□ -2.61
CSPG4Q6UVK1 RNU6-1290P-201ENST00000362957 109 ntBASIC-1.27□□□□□ -2.61
CSPG4Q6UVK1 Y_RNA.171-201ENST00000363760 102 ntBASIC-1.27□□□□□ -2.61
CSPG4Q6UVK1 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.27□□□□□ -2.61
CSPG4Q6UVK1 AC060788.1-201ENST00000521318 469 ntBASIC-1.27□□□□□ -2.61
CSPG4Q6UVK1 AC021443.1-201ENST00000604478 211 ntBASIC-1.27□□□□□ -2.61
CSPG4Q6UVK1 RNU6-89P-201ENST00000606519 100 ntBASIC-1.27□□□□□ -2.61
CSPG4Q6UVK1 Evf-2_5p.1-201ENST00000614213 142 ntBASIC-1.27□□□□□ -2.61
CSPG4Q6UVK1 AC099654.14-201ENST00000638599 341 ntBASIC-1.27□□□□□ -2.61
CSPG4Q6UVK1 RNU6-1120P-201ENST00000362988 108 ntBASIC-1.27□□□□□ -2.61
CSPG4Q6UVK1 SNORA40.3-201ENST00000390964 122 ntBASIC-1.27□□□□□ -2.61
CSPG4Q6UVK1 RNU6-332P-201ENST00000391193 108 ntBASIC-1.27□□□□□ -2.61
CSPG4Q6UVK1 RNU6-803P-201ENST00000516034 102 ntBASIC-1.27□□□□□ -2.61
CSPG4Q6UVK1 RNU6-911P-201ENST00000516523 104 ntBASIC-1.27□□□□□ -2.61
CSPG4Q6UVK1 Y_RNA.698-201ENST00000516798 118 ntBASIC-1.27□□□□□ -2.61
CSPG4Q6UVK1 AC084782.3-201ENST00000612282 578 ntBASIC-1.27□□□□□ -2.61
CSPG4Q6UVK1 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.27□□□□□ -2.61
CSPG4Q6UVK1 RNU6-1125P-201ENST00000363601 107 ntBASIC-1.28□□□□□ -2.61
CSPG4Q6UVK1 MTND4P28-201ENST00000426217 387 ntBASIC-1.28□□□□□ -2.61
CSPG4Q6UVK1 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-1.28□□□□□ -2.61
CSPG4Q6UVK1 RNU7-63P-201ENST00000459054 62 ntBASIC-1.28□□□□□ -2.61
CSPG4Q6UVK1 Y_RNA.809-201ENST00000516058 95 ntBASIC-1.28□□□□□ -2.61
CSPG4Q6UVK1 MIR3145-201ENST00000580727 82 ntBASIC-1.28□□□□□ -2.61
CSPG4Q6UVK1 AL158211.2-201ENST00000607282 395 ntBASIC-1.28□□□□□ -2.61
CSPG4Q6UVK1 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC-1.28□□□□□ -2.61
CSPG4Q6UVK1 AC013791.1-201ENST00000616619 62 ntBASIC-1.28□□□□□ -2.61
CSPG4Q6UVK1 RNU6-500P-201ENST00000362349 107 ntBASIC-1.28□□□□□ -2.61
CSPG4Q6UVK1 Y_RNA.72-201ENST00000362894 103 ntBASIC-1.28□□□□□ -2.61
CSPG4Q6UVK1 Y_RNA.127-201ENST00000363386 109 ntBASIC-1.28□□□□□ -2.61
CSPG4Q6UVK1 RNU6-524P-201ENST00000384270 107 ntBASIC-1.28□□□□□ -2.61
CSPG4Q6UVK1 RNU6-243P-201ENST00000391140 107 ntBASIC-1.28□□□□□ -2.61
CSPG4Q6UVK1 MIR190B-201ENST00000401119 79 ntBASIC-1.28□□□□□ -2.61
CSPG4Q6UVK1 AP002795.1-201ENST00000534879 84 ntBASIC-1.28□□□□□ -2.61
CSPG4Q6UVK1 SNORA22.1-201ENST00000362701 134 ntBASIC-1.29□□□□□ -2.62
Retrieved 100 of 98,524 protein–RNA pairs in 111.6 ms