Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 MIR8065-201ENST00000620577 100 ntBASIC1.89□□□□□ -2.11
USP39Q53GS9 SNORD3E-202ENST00000627253 216 ntBASIC1.89□□□□□ -2.11
USP39Q53GS9 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.89□□□□□ -2.11
USP39Q53GS9 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.89□□□□□ -2.11
USP39Q53GS9 AL512310.12-203ENST00000640543 90 ntBASIC1.89□□□□□ -2.11
USP39Q53GS9 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.89□□□□□ -2.11
USP39Q53GS9 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
USP39Q53GS9 MIR424-201ENST00000362227 98 ntBASIC1.88□□□□□ -2.11
USP39Q53GS9 SNORA1.1-201ENST00000364671 133 ntBASIC1.88□□□□□ -2.11
USP39Q53GS9 SUMO2P12-201ENST00000405924 140 ntBASIC1.88□□□□□ -2.11
USP39Q53GS9 RNU2-7P-201ENST00000410794 178 ntBASIC1.88□□□□□ -2.11
USP39Q53GS9 RNA5SP100-201ENST00000410903 110 ntBASIC1.88□□□□□ -2.11
USP39Q53GS9 RNA5SP59-201ENST00000410922 110 ntBASIC1.88□□□□□ -2.11
USP39Q53GS9 AC090844.1-201ENST00000422019 156 ntBASIC1.88□□□□□ -2.11
USP39Q53GS9 SNORD13-201ENST00000459299 104 ntBASIC1.88□□□□□ -2.11
USP39Q53GS9 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.88□□□□□ -2.11
USP39Q53GS9 SNORA74.3-201ENST00000517108 154 ntBASIC1.88□□□□□ -2.11
USP39Q53GS9 SNRPGP19-201ENST00000603826 189 ntBASIC1.88□□□□□ -2.11
USP39Q53GS9 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC1.88□□□□□ -2.11
USP39Q53GS9 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.88□□□□□ -2.11
USP39Q53GS9 MIR376B-201ENST00000614515 100 ntBASIC1.88□□□□□ -2.11
USP39Q53GS9 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.88□□□□□ -2.11
USP39Q53GS9 AC084768.2-201ENST00000622736 221 ntBASIC1.88□□□□□ -2.11
USP39Q53GS9 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
USP39Q53GS9 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.88□□□□□ -2.11
USP39Q53GS9 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
USP39Q53GS9 RNU6-497P-201ENST00000365316 104 ntBASIC1.87□□□□□ -2.11
USP39Q53GS9 RNU6-979P-201ENST00000383896 107 ntBASIC1.87□□□□□ -2.11
USP39Q53GS9 RNU6-972P-201ENST00000391208 107 ntBASIC1.87□□□□□ -2.11
USP39Q53GS9 MIR1255A-201ENST00000408338 113 ntBASIC1.87□□□□□ -2.11
USP39Q53GS9 AC003989.2-201ENST00000440224 169 ntBASIC1.87□□□□□ -2.11
USP39Q53GS9 RPL39P39-201ENST00000455840 151 ntBASIC1.87□□□□□ -2.11
USP39Q53GS9 snoU13.16-201ENST00000459350 104 ntBASIC1.87□□□□□ -2.11
USP39Q53GS9 RNU7-35P-201ENST00000517174 62 ntBASIC1.87□□□□□ -2.11
USP39Q53GS9 FAM106DP-201ENST00000586416 501 ntBASIC1.87□□□□□ -2.11
USP39Q53GS9 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.87□□□□□ -2.11
USP39Q53GS9 Y_RNA.96-201ENST00000363092 109 ntBASIC1.86□□□□□ -2.11
USP39Q53GS9 RNU6-1276P-201ENST00000365372 104 ntBASIC1.86□□□□□ -2.11
USP39Q53GS9 SNORD116-22-201ENST00000384430 92 ntBASIC1.86□□□□□ -2.11
USP39Q53GS9 MIR206-201ENST00000384872 86 ntBASIC1.86□□□□□ -2.11
USP39Q53GS9 MIR1287-201ENST00000408492 90 ntBASIC1.86□□□□□ -2.11
USP39Q53GS9 RPL31P63-201ENST00000422565 375 ntBASIC1.86□□□□□ -2.11
USP39Q53GS9 RNU7-2P-201ENST00000516096 62 ntBASIC1.86□□□□□ -2.11
USP39Q53GS9 RNA5SP481-201ENST00000516814 122 ntBASIC1.86□□□□□ -2.11
USP39Q53GS9 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.86□□□□□ -2.11
USP39Q53GS9 MIR4439-201ENST00000583746 80 ntBASIC1.86□□□□□ -2.11
USP39Q53GS9 uc_338.20-201ENST00000621563 178 ntBASIC1.86□□□□□ -2.11
USP39Q53GS9 Z97988.1-201ENST00000637697 135 ntBASIC1.86□□□□□ -2.11
USP39Q53GS9 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
USP39Q53GS9 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.85□□□□□ -2.11
USP39Q53GS9 RNU6-1163P-201ENST00000364516 107 ntBASIC1.85□□□□□ -2.11
USP39Q53GS9 SNORD58A-201ENST00000383875 65 ntBASIC1.85□□□□□ -2.11
USP39Q53GS9 U8.15-201ENST00000390947 134 ntBASIC1.85□□□□□ -2.11
USP39Q53GS9 RNU6-917P-201ENST00000516294 104 ntBASIC1.85□□□□□ -2.11
USP39Q53GS9 MIR5588-201ENST00000581890 63 ntBASIC1.85□□□□□ -2.11
USP39Q53GS9 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.85□□□□□ -2.11
USP39Q53GS9 SEPT14P17-201ENST00000617978 177 ntBASIC1.85□□□□□ -2.11
USP39Q53GS9 AC025521.1-201ENST00000621624 286 ntBASIC1.85□□□□□ -2.11
USP39Q53GS9 MIR3202-2-201ENST00000635980 79 ntBASIC1.85□□□□□ -2.11
USP39Q53GS9 RNU6-813P-201ENST00000384691 107 ntBASIC1.84□□□□□ -2.11
USP39Q53GS9 MIR34C-201ENST00000384831 77 ntBASIC1.84□□□□□ -2.11
USP39Q53GS9 SNORA67.5-201ENST00000391036 107 ntBASIC1.84□□□□□ -2.11
USP39Q53GS9 Y_RNA.620-201ENST00000411009 88 ntBASIC1.84□□□□□ -2.11
USP39Q53GS9 RNU6-602P-201ENST00000411155 105 ntBASIC1.84□□□□□ -2.11
USP39Q53GS9 AC245047.7-201ENST00000440265 293 ntBASIC1.84□□□□□ -2.11
USP39Q53GS9 RNU6-250P-201ENST00000516958 103 ntBASIC1.84□□□□□ -2.11
USP39Q53GS9 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.84□□□□□ -2.11
USP39Q53GS9 AC096720.1-201ENST00000604441 183 ntBASIC1.84□□□□□ -2.11
USP39Q53GS9 MIR502-201ENST00000606349 86 ntBASIC1.84□□□□□ -2.11
USP39Q53GS9 MIR8081-201ENST00000611533 95 ntBASIC1.84□□□□□ -2.11
USP39Q53GS9 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
USP39Q53GS9 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.83□□□□□ -2.12
USP39Q53GS9 MIR9-3-201ENST00000385084 90 ntBASIC1.83□□□□□ -2.12
USP39Q53GS9 RN7SL274P-201ENST00000492268 272 ntBASIC1.83□□□□□ -2.12
USP39Q53GS9 SNORD67.1-201ENST00000516618 108 ntBASIC1.83□□□□□ -2.12
USP39Q53GS9 SNORA31.17-201ENST00000516953 127 ntBASIC1.83□□□□□ -2.12
USP39Q53GS9 MIR4764-201ENST00000580680 88 ntBASIC1.83□□□□□ -2.12
USP39Q53GS9 MIR4668-201ENST00000582284 70 ntBASIC1.83□□□□□ -2.12
USP39Q53GS9 RNU6-86P-201ENST00000606534 107 ntBASIC1.83□□□□□ -2.12
USP39Q53GS9 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
USP39Q53GS9 SNORD116-10-201ENST00000363791 102 ntBASIC1.82□□□□□ -2.12
USP39Q53GS9 RNU6-203P-201ENST00000384038 104 ntBASIC1.82□□□□□ -2.12
USP39Q53GS9 RNU6-1067P-201ENST00000384752 107 ntBASIC1.82□□□□□ -2.12
USP39Q53GS9 RNU7-171P-201ENST00000459581 62 ntBASIC1.82□□□□□ -2.12
USP39Q53GS9 AC008834.1-201ENST00000511612 175 ntBASIC1.82□□□□□ -2.12
USP39Q53GS9 RNU7-43P-201ENST00000516554 64 ntBASIC1.82□□□□□ -2.12
USP39Q53GS9 AC103810.7-201ENST00000607821 91 ntBASIC1.82□□□□□ -2.12
USP39Q53GS9 AC008133.2-201ENST00000624540 351 ntBASIC1.82□□□□□ -2.12
USP39Q53GS9 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC1.82□□□□□ -2.12
USP39Q53GS9 SNORD38.1-201ENST00000363863 68 ntBASIC1.81□□□□□ -2.12
USP39Q53GS9 RNU6-242P-201ENST00000384359 107 ntBASIC1.81□□□□□ -2.12
USP39Q53GS9 MIR194-1-201ENST00000384892 85 ntBASIC1.81□□□□□ -2.12
USP39Q53GS9 RNU6-321P-201ENST00000410912 106 ntBASIC1.81□□□□□ -2.12
USP39Q53GS9 RNU7-79P-201ENST00000516082 62 ntBASIC1.81□□□□□ -2.12
USP39Q53GS9 MIR3198-2-201ENST00000577868 80 ntBASIC1.81□□□□□ -2.12
USP39Q53GS9 MIR4666B-201ENST00000578142 81 ntBASIC1.81□□□□□ -2.12
USP39Q53GS9 MIR548AO-201ENST00000579992 96 ntBASIC1.81□□□□□ -2.12
USP39Q53GS9 AC012493.3-201ENST00000604494 112 ntBASIC1.81□□□□□ -2.12
USP39Q53GS9 AC103810.8-201ENST00000607347 118 ntBASIC1.81□□□□□ -2.12
USP39Q53GS9 RNY1P4-201ENST00000384595 115 ntBASIC1.8□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 184.5 ms