Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 RNU6-163P-201ENST00000384396 106 ntBASIC1□□□□□ -2.25
COL4A4P53420 RNY1P7-201ENST00000384743 110 ntBASIC1□□□□□ -2.25
COL4A4P53420 MIR548D2-201ENST00000384955 97 ntBASIC1□□□□□ -2.25
COL4A4P53420 MIR1255A-201ENST00000408338 113 ntBASIC1□□□□□ -2.25
COL4A4P53420 AC245047.3-201ENST00000429428 127 ntBASIC1□□□□□ -2.25
COL4A4P53420 AL035398.1-201ENST00000430869 322 ntBASIC1□□□□□ -2.25
COL4A4P53420 AC114811.1-201ENST00000507207 168 ntBASIC1□□□□□ -2.25
COL4A4P53420 SNORA31.4-201ENST00000516049 129 ntBASIC1□□□□□ -2.25
COL4A4P53420 RNU6-667P-201ENST00000517186 102 ntBASIC1□□□□□ -2.25
COL4A4P53420 MIR8055-201ENST00000610739 97 ntBASIC1□□□□□ -2.25
COL4A4P53420 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1□□□□□ -2.25
COL4A4P53420 RNY3P2-201ENST00000362918 102 ntBASIC0.99□□□□□ -2.25
COL4A4P53420 SNORA33-201ENST00000363664 130 ntBASIC0.99□□□□□ -2.25
COL4A4P53420 SNORD14E-201ENST00000364009 85 ntBASIC0.99□□□□□ -2.25
COL4A4P53420 RNU4-67P-201ENST00000364569 141 ntBASIC0.99□□□□□ -2.25
COL4A4P53420 MIR488-201ENST00000365739 83 ntBASIC0.99□□□□□ -2.25
COL4A4P53420 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC0.99□□□□□ -2.25
COL4A4P53420 AL451046.2-201ENST00000403074 277 ntBASIC0.99□□□□□ -2.25
COL4A4P53420 RNU6-733P-201ENST00000410759 104 ntBASIC0.99□□□□□ -2.25
COL4A4P53420 AL022718.1-201ENST00000412004 84 ntBASIC0.99□□□□□ -2.25
COL4A4P53420 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.99□□□□□ -2.25
COL4A4P53420 AC113410.1-201ENST00000505029 247 ntBASIC0.99□□□□□ -2.25
COL4A4P53420 RNU6-998P-201ENST00000515894 101 ntBASIC0.99□□□□□ -2.25
COL4A4P53420 RNU7-12P-201ENST00000516030 62 ntBASIC0.99□□□□□ -2.25
COL4A4P53420 RNU6-109P-201ENST00000516364 107 ntBASIC0.99□□□□□ -2.25
COL4A4P53420 RNU6-184P-201ENST00000516514 107 ntBASIC0.99□□□□□ -2.25
COL4A4P53420 SNORD36C-201ENST00000516733 66 ntBASIC0.99□□□□□ -2.25
COL4A4P53420 SNORA18.7-201ENST00000516910 131 ntBASIC0.99□□□□□ -2.25
COL4A4P53420 RNU6-762P-201ENST00000517107 102 ntBASIC0.99□□□□□ -2.25
COL4A4P53420 RNU7-181P-201ENST00000517234 74 ntBASIC0.99□□□□□ -2.25
COL4A4P53420 SNORA31.25-201ENST00000517242 134 ntBASIC0.99□□□□□ -2.25
COL4A4P53420 MIR4287-201ENST00000579398 78 ntBASIC0.99□□□□□ -2.25
COL4A4P53420 MIR3163-201ENST00000581592 73 ntBASIC0.99□□□□□ -2.25
COL4A4P53420 FAM71BP1-201ENST00000604431 523 ntBASIC0.99□□□□□ -2.25
COL4A4P53420 AC062037.1-201ENST00000605302 128 ntBASIC0.99□□□□□ -2.25
COL4A4P53420 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC0.99□□□□□ -2.25
COL4A4P53420 SNORD115-2-201ENST00000362842 82 ntBASIC0.98□□□□□ -2.25
COL4A4P53420 RNY1P1-201ENST00000364372 112 ntBASIC0.98□□□□□ -2.25
COL4A4P53420 RNA5SP331-201ENST00000364986 107 ntBASIC0.98□□□□□ -2.25
COL4A4P53420 SNORD115-20-201ENST00000365099 82 ntBASIC0.98□□□□□ -2.25
COL4A4P53420 SNORD115-35-201ENST00000365122 82 ntBASIC0.98□□□□□ -2.25
COL4A4P53420 RNU6-409P-201ENST00000384114 104 ntBASIC0.98□□□□□ -2.25
COL4A4P53420 Y_RNA.440-201ENST00000384120 114 ntBASIC0.98□□□□□ -2.25
COL4A4P53420 MIR136-201ENST00000385207 82 ntBASIC0.98□□□□□ -2.25
COL4A4P53420 RNU6-360P-201ENST00000390944 104 ntBASIC0.98□□□□□ -2.25
COL4A4P53420 U8.16-201ENST00000391279 133 ntBASIC0.98□□□□□ -2.25
COL4A4P53420 MIR1267-201ENST00000408723 78 ntBASIC0.98□□□□□ -2.25
COL4A4P53420 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.98□□□□□ -2.25
COL4A4P53420 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC0.98□□□□□ -2.25
COL4A4P53420 RNU7-6P-201ENST00000516845 62 ntBASIC0.98□□□□□ -2.25
COL4A4P53420 RNU6-1258P-201ENST00000516911 111 ntBASIC0.98□□□□□ -2.25
COL4A4P53420 RNU6-1116P-201ENST00000517269 99 ntBASIC0.98□□□□□ -2.25
COL4A4P53420 AL627230.6-201ENST00000611129 280 ntBASIC0.98□□□□□ -2.25
COL4A4P53420 MIR6857-201ENST00000613267 93 ntBASIC0.98□□□□□ -2.25
COL4A4P53420 U4atac.1-201ENST00000618345 95 ntBASIC0.98□□□□□ -2.25
COL4A4P53420 Y_RNA.10-201ENST00000362371 110 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 Y_RNA.155-201ENST00000363632 101 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 RNU6-1067P-201ENST00000384752 107 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 MIR29C-201ENST00000385231 88 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 RNA5SP450-201ENST00000411206 102 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 AC096949.1-201ENST00000412047 152 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 SNX2P2-201ENST00000424553 323 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 RNU7-61P-201ENST00000515897 61 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 RNU6-904P-201ENST00000516206 101 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 RNU2-19P-201ENST00000517288 84 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 AC005786.1-201ENST00000588553 154 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC0.97□□□□□ -2.25
COL4A4P53420 SNORA28-201ENST00000606769 126 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 MIR1255B1-201ENST00000636325 63 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 SNORD115-34-201ENST00000362441 82 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 SNORD115-12-201ENST00000362583 82 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 SNORD115-29-201ENST00000362834 82 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 SNORD115-9-201ENST00000362912 82 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 SNORD115-21-201ENST00000362963 81 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 SNORD115-14-201ENST00000363090 81 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 SNORD115-19-201ENST00000363098 82 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 SNORD115-18-201ENST00000363293 82 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 SNORD115-13-201ENST00000363358 82 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 SNORD115-41-201ENST00000363608 82 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 SNORD115-11-201ENST00000363616 82 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 SNORD115-5-201ENST00000363633 82 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 SNORD115-39-201ENST00000363694 82 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 SNORD115-4-201ENST00000363810 82 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 SNORD115-16-201ENST00000363887 82 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 SNORD115-6-201ENST00000363942 82 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 SNORD115-42-201ENST00000364273 82 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 Y_RNA.241-201ENST00000364470 117 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 SNORD115-17-201ENST00000364612 82 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 SNORD115-15-201ENST00000364809 81 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 SNORD115-1-201ENST00000364961 82 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 SNORD115-26-201ENST00000365067 82 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 SNORD115-10-201ENST00000365073 81 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 SNORA1.2-201ENST00000365189 134 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 SNORD115-43-201ENST00000365503 82 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 SNORD115-36-201ENST00000365629 82 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 SNORD116-22-201ENST00000384430 92 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 RNA5SP212-201ENST00000391223 107 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 RNU2-7P-201ENST00000410794 178 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 AC004941.2-201ENST00000427009 228 ntBASIC0.97□□□□□ -2.25
COL4A4P53420 RPL23AP6-201ENST00000446637 472 ntBASIC0.97□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 115.1 ms