Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 RNU6-1333P-201ENST00000516162 93 ntBASIC1.11□□□□□ -2.23
CLCN3P51790 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.11□□□□□ -2.23
CLCN3P51790 AC021443.1-201ENST00000604478 211 ntBASIC1.11□□□□□ -2.23
CLCN3P51790 SEPT14P17-201ENST00000617978 177 ntBASIC1.11□□□□□ -2.23
CLCN3P51790 MIR6516-201ENST00000630554 81 ntBASIC1.11□□□□□ -2.23
CLCN3P51790 SNORA1.1-201ENST00000364671 133 ntBASIC1.1□□□□□ -2.23
CLCN3P51790 Y_RNA.353-201ENST00000365440 108 ntBASIC1.1□□□□□ -2.23
CLCN3P51790 SNORA22C-201ENST00000384614 134 ntBASIC1.1□□□□□ -2.23
CLCN3P51790 MIR563-201ENST00000385080 79 ntBASIC1.1□□□□□ -2.23
CLCN3P51790 MIR518E-201ENST00000385252 88 ntBASIC1.1□□□□□ -2.23
CLCN3P51790 MT-TI-201ENST00000387365 69 ntBASIC1.1□□□□□ -2.23
CLCN3P51790 SNORA75.2-201ENST00000391138 150 ntBASIC1.1□□□□□ -2.23
CLCN3P51790 SNORA75.3-201ENST00000391231 150 ntBASIC1.1□□□□□ -2.23
CLCN3P51790 RNA5SP136-201ENST00000410906 107 ntBASIC1.1□□□□□ -2.23
CLCN3P51790 RPS3AP1-201ENST00000413190 320 ntBASIC1.1□□□□□ -2.23
CLCN3P51790 AC002429.1-201ENST00000437672 148 ntBASIC1.1□□□□□ -2.23
CLCN3P51790 RNY4P20-201ENST00000516678 93 ntBASIC1.1□□□□□ -2.23
CLCN3P51790 MIR3152-201ENST00000579801 74 ntBASIC1.1□□□□□ -2.23
CLCN3P51790 SNORA4-201ENST00000584302 138 ntBASIC1.1□□□□□ -2.23
CLCN3P51790 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.1□□□□□ -2.23
CLCN3P51790 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.09□□□□□ -2.23
CLCN3P51790 Y_RNA.171-201ENST00000363760 102 ntBASIC1.09□□□□□ -2.23
CLCN3P51790 RNU6-1104P-201ENST00000384723 104 ntBASIC1.09□□□□□ -2.23
CLCN3P51790 RNU2-51P-201ENST00000410708 197 ntBASIC1.09□□□□□ -2.23
CLCN3P51790 AL512326.2-201ENST00000426359 151 ntBASIC1.09□□□□□ -2.23
CLCN3P51790 RNU6-893P-201ENST00000458841 100 ntBASIC1.09□□□□□ -2.23
CLCN3P51790 RNU7-164P-201ENST00000459221 62 ntBASIC1.09□□□□□ -2.23
CLCN3P51790 MIR1270-201ENST00000459320 83 ntBASIC1.09□□□□□ -2.23
CLCN3P51790 COX6CP6-201ENST00000490840 228 ntBASIC1.09□□□□□ -2.23
CLCN3P51790 RNU5E-3P-201ENST00000515913 68 ntBASIC1.09□□□□□ -2.23
CLCN3P51790 AC004812.1-201ENST00000540773 146 ntBASIC1.09□□□□□ -2.23
CLCN3P51790 Y_RNA.118-201ENST00000363300 101 ntBASIC1.08□□□□□ -2.24
CLCN3P51790 Y_RNA.470-201ENST00000384307 117 ntBASIC1.08□□□□□ -2.24
CLCN3P51790 Y_RNA.531-201ENST00000384589 121 ntBASIC1.08□□□□□ -2.24
CLCN3P51790 MIR200A-201ENST00000384875 90 ntBASIC1.08□□□□□ -2.24
CLCN3P51790 AC113410.1-201ENST00000505029 247 ntBASIC1.08□□□□□ -2.24
CLCN3P51790 RNU6-62P-201ENST00000516526 102 ntBASIC1.08□□□□□ -2.24
CLCN3P51790 MIR373-201ENST00000362273 69 ntBASIC1.07□□□□□ -2.24
CLCN3P51790 Y_RNA.198-201ENST00000364013 98 ntBASIC1.07□□□□□ -2.24
CLCN3P51790 RNU6-654P-201ENST00000364373 107 ntBASIC1.07□□□□□ -2.24
CLCN3P51790 RNU6-396P-201ENST00000365369 105 ntBASIC1.07□□□□□ -2.24
CLCN3P51790 AL022718.1-201ENST00000412004 84 ntBASIC1.07□□□□□ -2.24
CLCN3P51790 MRPL35P3-201ENST00000421557 364 ntBASIC1.07□□□□□ -2.24
CLCN3P51790 MIR2115-201ENST00000516657 100 ntBASIC1.07□□□□□ -2.24
CLCN3P51790 AC022523.2-201ENST00000561045 150 ntBASIC1.07□□□□□ -2.24
CLCN3P51790 MIR4264-201ENST00000583520 66 ntBASIC1.07□□□□□ -2.24
CLCN3P51790 AL078603.1-201ENST00000603824 313 ntBASIC1.07□□□□□ -2.24
CLCN3P51790 AC025166.1-201ENST00000612411 163 ntBASIC1.07□□□□□ -2.24
CLCN3P51790 AC008163.1-202ENST00000636004 2889 ntBASIC1.06□□□□□ -2.24
CLCN3P51790 MTND5P18-201ENST00000445624 1801 ntBASIC1.06□□□□□ -2.24
CLCN3P51790 Y_RNA.291-201ENST00000364886 113 ntBASIC1.06□□□□□ -2.24
CLCN3P51790 SNORD38B-201ENST00000384690 67 ntBASIC1.06□□□□□ -2.24
CLCN3P51790 SNORD12C-201ENST00000386307 89 ntBASIC1.06□□□□□ -2.24
CLCN3P51790 RNU6-1154P-201ENST00000391001 104 ntBASIC1.06□□□□□ -2.24
CLCN3P51790 RPS29P28-201ENST00000446439 141 ntBASIC1.06□□□□□ -2.24
CLCN3P51790 RNU6-313P-201ENST00000516317 112 ntBASIC1.06□□□□□ -2.24
CLCN3P51790 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.06□□□□□ -2.24
CLCN3P51790 MIR3973-201ENST00000579824 107 ntBASIC1.06□□□□□ -2.24
CLCN3P51790 MIR7111-201ENST00000619751 72 ntBASIC1.06□□□□□ -2.24
CLCN3P51790 SNORD38B-202ENST00000625943 69 ntBASIC1.06□□□□□ -2.24
CLCN3P51790 U6.95-201ENST00000636931 70 ntBASIC1.06□□□□□ -2.24
CLCN3P51790 AL391516.1-201ENST00000554380 2449 ntBASIC1.05□□□□□ -2.24
CLCN3P51790 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
CLCN3P51790 RNU6-834P-201ENST00000362367 110 ntBASIC1.05□□□□□ -2.24
CLCN3P51790 Y_RNA.168-201ENST00000363740 102 ntBASIC1.05□□□□□ -2.24
CLCN3P51790 Y_RNA.354-201ENST00000365448 111 ntBASIC1.05□□□□□ -2.24
CLCN3P51790 Y_RNA.528-201ENST00000384575 108 ntBASIC1.05□□□□□ -2.24
CLCN3P51790 RNU6-735P-201ENST00000410612 107 ntBASIC1.05□□□□□ -2.24
CLCN3P51790 snoU13.2-201ENST00000459201 104 ntBASIC1.05□□□□□ -2.24
CLCN3P51790 SNORD33.1-201ENST00000516213 88 ntBASIC1.05□□□□□ -2.24
CLCN3P51790 RNU6-1061P-201ENST00000516530 99 ntBASIC1.05□□□□□ -2.24
CLCN3P51790 RNU7-35P-201ENST00000517174 62 ntBASIC1.05□□□□□ -2.24
CLCN3P51790 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.05□□□□□ -2.24
CLCN3P51790 uc_338.6-201ENST00000613544 171 ntBASIC1.05□□□□□ -2.24
CLCN3P51790 RMST_2.1-201ENST00000617263 136 ntBASIC1.05□□□□□ -2.24
CLCN3P51790 MIR6740-201ENST00000618268 113 ntBASIC1.05□□□□□ -2.24
CLCN3P51790 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC1.05□□□□□ -2.24
CLCN3P51790 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.05□□□□□ -2.24
CLCN3P51790 Y_RNA.346-201ENST00000365385 112 ntBASIC1.04□□□□□ -2.24
CLCN3P51790 RNU6-342P-201ENST00000384521 104 ntBASIC1.04□□□□□ -2.24
CLCN3P51790 MIR532-201ENST00000385025 91 ntBASIC1.04□□□□□ -2.24
CLCN3P51790 MIR1263-201ENST00000408324 86 ntBASIC1.04□□□□□ -2.24
CLCN3P51790 RNU7-113P-201ENST00000459273 62 ntBASIC1.04□□□□□ -2.24
CLCN3P51790 AC036111.3-201ENST00000526389 112 ntBASIC1.04□□□□□ -2.24
CLCN3P51790 AP000753.3-201ENST00000604083 169 ntBASIC1.04□□□□□ -2.24
CLCN3P51790 AC012676.2-201ENST00000619258 186 ntBASIC1.04□□□□□ -2.24
CLCN3P51790 SNORD114-24-201ENST00000365029 72 ntBASIC1.03□□□□□ -2.24
CLCN3P51790 RNU6-1081P-201ENST00000384537 107 ntBASIC1.03□□□□□ -2.24
CLCN3P51790 MIR4698-201ENST00000577795 80 ntBASIC1.03□□□□□ -2.24
CLCN3P51790 MIR548AE2-201ENST00000583456 67 ntBASIC1.03□□□□□ -2.24
CLCN3P51790 AC211469.2-201ENST00000605461 205 ntBASIC1.03□□□□□ -2.24
CLCN3P51790 AC087741.2-201ENST00000619415 172 ntBASIC1.03□□□□□ -2.24
CLCN3P51790 MIR30D-201ENST00000362283 70 ntBASIC1.02□□□□□ -2.25
CLCN3P51790 SNORD115-19-201ENST00000363098 82 ntBASIC1.02□□□□□ -2.25
CLCN3P51790 SNORD115-18-201ENST00000363293 82 ntBASIC1.02□□□□□ -2.25
CLCN3P51790 SNORD115-17-201ENST00000364612 82 ntBASIC1.02□□□□□ -2.25
CLCN3P51790 SNORD111-201ENST00000408139 94 ntBASIC1.02□□□□□ -2.25
CLCN3P51790 MIR548J-201ENST00000408833 112 ntBASIC1.02□□□□□ -2.25
CLCN3P51790 RNA5SP95-201ENST00000410319 137 ntBASIC1.02□□□□□ -2.25
CLCN3P51790 RNU6-1086P-201ENST00000410930 100 ntBASIC1.02□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 168.4 ms