Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC1.21□□□□□ -2.22
PDLIM4P50479 RNU6-94P-201ENST00000607728 107 ntBASIC1.21□□□□□ -2.22
PDLIM4P50479 AC087741.2-201ENST00000619415 172 ntBASIC1.21□□□□□ -2.22
PDLIM4P50479 AL353770.2-201ENST00000620024 78 ntBASIC1.21□□□□□ -2.22
PDLIM4P50479 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.21□□□□□ -2.22
PDLIM4P50479 MIR377-201ENST00000362145 69 ntBASIC1.2□□□□□ -2.22
PDLIM4P50479 Y_RNA.85-201ENST00000363014 111 ntBASIC1.2□□□□□ -2.22
PDLIM4P50479 RNA5SP264-201ENST00000363115 107 ntBASIC1.2□□□□□ -2.22
PDLIM4P50479 RNU6-392P-201ENST00000364926 101 ntBASIC1.2□□□□□ -2.22
PDLIM4P50479 RNU6-396P-201ENST00000365369 105 ntBASIC1.2□□□□□ -2.22
PDLIM4P50479 Y_RNA.362-201ENST00000365518 110 ntBASIC1.2□□□□□ -2.22
PDLIM4P50479 Y_RNA.470-201ENST00000384307 117 ntBASIC1.2□□□□□ -2.22
PDLIM4P50479 MIR499A-201ENST00000384903 122 ntBASIC1.2□□□□□ -2.22
PDLIM4P50479 RNU6-1086P-201ENST00000410930 100 ntBASIC1.2□□□□□ -2.22
PDLIM4P50479 AC090844.1-201ENST00000422019 156 ntBASIC1.2□□□□□ -2.22
PDLIM4P50479 AC244023.1-201ENST00000426884 112 ntBASIC1.2□□□□□ -2.22
PDLIM4P50479 AC245047.7-201ENST00000440265 293 ntBASIC1.2□□□□□ -2.22
PDLIM4P50479 RNU7-35P-201ENST00000517174 62 ntBASIC1.2□□□□□ -2.22
PDLIM4P50479 AC242498.1-201ENST00000604134 111 ntBASIC1.2□□□□□ -2.22
PDLIM4P50479 MIR6078-201ENST00000611069 100 ntBASIC1.2□□□□□ -2.22
PDLIM4P50479 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.19□□□□□ -2.22
PDLIM4P50479 Y_RNA.323-201ENST00000365157 109 ntBASIC1.19□□□□□ -2.22
PDLIM4P50479 MIR1185-1-201ENST00000408598 86 ntBASIC1.19□□□□□ -2.22
PDLIM4P50479 MIR2115-201ENST00000516657 100 ntBASIC1.19□□□□□ -2.22
PDLIM4P50479 RNA5SP33-201ENST00000516687 98 ntBASIC1.19□□□□□ -2.22
PDLIM4P50479 MIR4264-201ENST00000583520 66 ntBASIC1.19□□□□□ -2.22
PDLIM4P50479 Y_RNA.49-201ENST00000362714 112 ntBASIC1.18□□□□□ -2.22
PDLIM4P50479 RNU6-580P-201ENST00000365159 107 ntBASIC1.18□□□□□ -2.22
PDLIM4P50479 Y_RNA.344-201ENST00000365381 112 ntBASIC1.18□□□□□ -2.22
PDLIM4P50479 MIR563-201ENST00000385080 79 ntBASIC1.18□□□□□ -2.22
PDLIM4P50479 SNORD12C-201ENST00000386307 89 ntBASIC1.18□□□□□ -2.22
PDLIM4P50479 RNU6-613P-201ENST00000410412 108 ntBASIC1.18□□□□□ -2.22
PDLIM4P50479 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.18□□□□□ -2.22
PDLIM4P50479 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.18□□□□□ -2.22
PDLIM4P50479 RN7SKP88-201ENST00000516847 250 ntBASIC1.18□□□□□ -2.22
PDLIM4P50479 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC1.18□□□□□ -2.22
PDLIM4P50479 MIR548AE2-201ENST00000583456 67 ntBASIC1.18□□□□□ -2.22
PDLIM4P50479 7SK.8-201ENST00000612110 250 ntBASIC1.18□□□□□ -2.22
PDLIM4P50479 7SK.11-201ENST00000615477 250 ntBASIC1.18□□□□□ -2.22
PDLIM4P50479 7SK.13-201ENST00000622040 250 ntBASIC1.18□□□□□ -2.22
PDLIM4P50479 AL589743.1-201ENST00000551932 2712 ntBASIC1.18□□□□□ -2.22
PDLIM4P50479 MIR26B-201ENST00000362251 77 ntBASIC1.17□□□□□ -2.22
PDLIM4P50479 RNU6-44P-201ENST00000384045 107 ntBASIC1.17□□□□□ -2.22
PDLIM4P50479 Y_RNA.549-201ENST00000384657 102 ntBASIC1.17□□□□□ -2.22
PDLIM4P50479 snoU13.2-201ENST00000459201 104 ntBASIC1.17□□□□□ -2.22
PDLIM4P50479 MIR1270-201ENST00000459320 83 ntBASIC1.17□□□□□ -2.22
PDLIM4P50479 RNU7-6P-201ENST00000516845 62 ntBASIC1.17□□□□□ -2.22
PDLIM4P50479 AL035470.1-201ENST00000622571 220 ntBASIC1.17□□□□□ -2.22
PDLIM4P50479 RNU6-1107P-201ENST00000364817 104 ntBASIC1.16□□□□□ -2.22
PDLIM4P50479 Y_RNA.309-201ENST00000365046 111 ntBASIC1.16□□□□□ -2.22
PDLIM4P50479 SNORD77B-201ENST00000391112 67 ntBASIC1.16□□□□□ -2.22
PDLIM4P50479 MIR1912-201ENST00000410389 80 ntBASIC1.16□□□□□ -2.22
PDLIM4P50479 PDCD5P2-201ENST00000507570 312 ntBASIC1.16□□□□□ -2.22
PDLIM4P50479 RNA5SP61-201ENST00000516453 100 ntBASIC1.16□□□□□ -2.22
PDLIM4P50479 AL162726.3-218ENST00000636401 95 ntBASIC1.16□□□□□ -2.22
PDLIM4P50479 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.15□□□□□ -2.22
PDLIM4P50479 RNU6-363P-201ENST00000362895 105 ntBASIC1.15□□□□□ -2.23
PDLIM4P50479 SNORD26-201ENST00000384147 75 ntBASIC1.15□□□□□ -2.23
PDLIM4P50479 RNU6-939P-201ENST00000384634 107 ntBASIC1.15□□□□□ -2.23
PDLIM4P50479 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.15□□□□□ -2.23
PDLIM4P50479 MIR5009-201ENST00000578736 100 ntBASIC1.15□□□□□ -2.23
PDLIM4P50479 MIR7111-201ENST00000619751 72 ntBASIC1.15□□□□□ -2.23
PDLIM4P50479 MIR6516-201ENST00000630554 81 ntBASIC1.15□□□□□ -2.23
PDLIM4P50479 MIR103A2-201ENST00000362154 78 ntBASIC1.14□□□□□ -2.23
PDLIM4P50479 SNORA25.3-201ENST00000363205 127 ntBASIC1.14□□□□□ -2.23
PDLIM4P50479 SNORA22-201ENST00000383907 134 ntBASIC1.14□□□□□ -2.23
PDLIM4P50479 SNORA18-201ENST00000384416 132 ntBASIC1.14□□□□□ -2.23
PDLIM4P50479 RNU6-342P-201ENST00000384521 104 ntBASIC1.14□□□□□ -2.23
PDLIM4P50479 AC068339.1-201ENST00000526965 141 ntBASIC1.14□□□□□ -2.23
PDLIM4P50479 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.14□□□□□ -2.23
PDLIM4P50479 AP000753.3-201ENST00000604083 169 ntBASIC1.14□□□□□ -2.23
PDLIM4P50479 Y_RNA.773-201ENST00000607168 90 ntBASIC1.14□□□□□ -2.23
PDLIM4P50479 SEPT14P17-201ENST00000617978 177 ntBASIC1.14□□□□□ -2.23
PDLIM4P50479 Y_RNA.78-201ENST00000362970 110 ntBASIC1.13□□□□□ -2.23
PDLIM4P50479 SNORD114-10-201ENST00000363409 72 ntBASIC1.13□□□□□ -2.23
PDLIM4P50479 Y_RNA.168-201ENST00000363740 102 ntBASIC1.13□□□□□ -2.23
PDLIM4P50479 RNU6-153P-201ENST00000364422 104 ntBASIC1.13□□□□□ -2.23
PDLIM4P50479 U8.6-201ENST00000364939 135 ntBASIC1.13□□□□□ -2.23
PDLIM4P50479 RNU6-1014P-201ENST00000383940 103 ntBASIC1.13□□□□□ -2.23
PDLIM4P50479 RNU6-106P-201ENST00000384405 107 ntBASIC1.13□□□□□ -2.23
PDLIM4P50479 ATP6V0E1P1-201ENST00000412537 226 ntBASIC1.13□□□□□ -2.23
PDLIM4P50479 RNU1-123P-201ENST00000458950 160 ntBASIC1.13□□□□□ -2.23
PDLIM4P50479 RNU7-79P-201ENST00000516082 62 ntBASIC1.13□□□□□ -2.23
PDLIM4P50479 RNU6-1018P-201ENST00000516577 106 ntBASIC1.13□□□□□ -2.23
PDLIM4P50479 FAM71BP1-201ENST00000604431 523 ntBASIC1.13□□□□□ -2.23
PDLIM4P50479 AL662814.1-201ENST00000617364 121 ntBASIC1.13□□□□□ -2.23
PDLIM4P50479 Y_RNA.508-201ENST00000384502 114 ntBASIC1.12□□□□□ -2.23
PDLIM4P50479 AC048334.1-201ENST00000477975 159 ntBASIC1.12□□□□□ -2.23
PDLIM4P50479 MIR6504-201ENST00000613520 61 ntBASIC1.12□□□□□ -2.23
PDLIM4P50479 Y_RNA.118-201ENST00000363300 101 ntBASIC1.11□□□□□ -2.23
PDLIM4P50479 SNORA63.5-201ENST00000363548 123 ntBASIC1.11□□□□□ -2.23
PDLIM4P50479 RNU4-67P-201ENST00000364569 141 ntBASIC1.11□□□□□ -2.23
PDLIM4P50479 RNY1P13-201ENST00000365030 105 ntBASIC1.11□□□□□ -2.23
PDLIM4P50479 SNORD115-35-201ENST00000365122 82 ntBASIC1.11□□□□□ -2.23
PDLIM4P50479 RNU6-949P-201ENST00000384040 107 ntBASIC1.11□□□□□ -2.23
PDLIM4P50479 RNU6-616P-201ENST00000384353 107 ntBASIC1.11□□□□□ -2.23
PDLIM4P50479 MIR588-201ENST00000384900 83 ntBASIC1.11□□□□□ -2.23
PDLIM4P50479 MT-TF-201ENST00000387314 71 ntBASIC1.11□□□□□ -2.23
PDLIM4P50479 SNORD12-201ENST00000391002 90 ntBASIC1.11□□□□□ -2.23
PDLIM4P50479 RNU6ATAC41P-201ENST00000408600 126 ntBASIC1.11□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 135.2 ms