Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 RNU6-1336P-201ENST00000383886 109 ntBASIC0.4□□□□□ -2.35
CDX1P47902 Y_RNA.393-201ENST00000383936 102 ntBASIC0.4□□□□□ -2.35
CDX1P47902 Y_RNA.452-201ENST00000384202 108 ntBASIC0.4□□□□□ -2.35
CDX1P47902 MIR7-2-201ENST00000384970 110 ntBASIC0.4□□□□□ -2.35
CDX1P47902 RNU6-918P-201ENST00000391219 106 ntBASIC0.4□□□□□ -2.35
CDX1P47902 RNU5E-9P-201ENST00000411164 104 ntBASIC0.4□□□□□ -2.35
CDX1P47902 MIR3678-201ENST00000578455 94 ntBASIC0.4□□□□□ -2.35
CDX1P47902 MIR4431-201ENST00000579990 94 ntBASIC0.4□□□□□ -2.35
CDX1P47902 uc_338.16-201ENST00000621804 95 ntBASIC0.4□□□□□ -2.35
CDX1P47902 Y_RNA.13-201ENST00000362403 112 ntBASIC0.39□□□□□ -2.35
CDX1P47902 SNORD114-26-201ENST00000363543 72 ntBASIC0.39□□□□□ -2.35
CDX1P47902 RNU6-1020P-201ENST00000363684 107 ntBASIC0.39□□□□□ -2.35
CDX1P47902 SNORD18A-201ENST00000363753 72 ntBASIC0.39□□□□□ -2.35
CDX1P47902 RNY1P6-201ENST00000384193 109 ntBASIC0.39□□□□□ -2.35
CDX1P47902 RNU6-574P-201ENST00000384265 107 ntBASIC0.39□□□□□ -2.35
CDX1P47902 RNY1P4-201ENST00000384595 115 ntBASIC0.39□□□□□ -2.35
CDX1P47902 SNORD71-201ENST00000411292 86 ntBASIC0.39□□□□□ -2.35
CDX1P47902 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.39□□□□□ -2.35
CDX1P47902 RNU6-469P-201ENST00000516253 101 ntBASIC0.39□□□□□ -2.35
CDX1P47902 RN7SL793P-201ENST00000583259 296 ntBASIC0.39□□□□□ -2.35
CDX1P47902 MIR8066-201ENST00000617280 78 ntBASIC0.39□□□□□ -2.35
CDX1P47902 MIR5087-201ENST00000635826 76 ntBASIC0.39□□□□□ -2.35
CDX1P47902 MIR411-201ENST00000362239 96 ntBASIC0.38□□□□□ -2.35
CDX1P47902 RNA5SP499-201ENST00000363982 119 ntBASIC0.38□□□□□ -2.35
CDX1P47902 RNU6-949P-201ENST00000384040 107 ntBASIC0.38□□□□□ -2.35
CDX1P47902 SNORA72.6-201ENST00000384520 129 ntBASIC0.38□□□□□ -2.35
CDX1P47902 AC114737.2-201ENST00000421583 173 ntBASIC0.38□□□□□ -2.35
CDX1P47902 SNORA68.3-201ENST00000515906 83 ntBASIC0.38□□□□□ -2.35
CDX1P47902 MIR4711-201ENST00000578274 70 ntBASIC0.38□□□□□ -2.35
CDX1P47902 Y_RNA.757-201ENST00000578934 114 ntBASIC0.38□□□□□ -2.35
CDX1P47902 MIR4491-201ENST00000581087 68 ntBASIC0.38□□□□□ -2.35
CDX1P47902 Y_RNA.42-201ENST00000362660 108 ntBASIC0.37□□□□□ -2.35
CDX1P47902 RNA5SP517-201ENST00000364724 117 ntBASIC0.37□□□□□ -2.35
CDX1P47902 Y_RNA.617-201ENST00000410920 90 ntBASIC0.37□□□□□ -2.35
CDX1P47902 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.37□□□□□ -2.35
CDX1P47902 RNU6-229P-201ENST00000516614 102 ntBASIC0.37□□□□□ -2.35
CDX1P47902 RNA5SP94-201ENST00000516917 108 ntBASIC0.37□□□□□ -2.35
CDX1P47902 MIR6082-201ENST00000613604 109 ntBASIC0.37□□□□□ -2.35
CDX1P47902 AC243829.3-201ENST00000622177 108 ntBASIC0.37□□□□□ -2.35
CDX1P47902 AL589743.1-201ENST00000551932 2712 ntBASIC0.36□□□□□ -2.35
CDX1P47902 RNU6-312P-201ENST00000364629 107 ntBASIC0.36□□□□□ -2.35
CDX1P47902 RNU6-768P-201ENST00000384683 107 ntBASIC0.36□□□□□ -2.35
CDX1P47902 SNORA40.8-201ENST00000411034 126 ntBASIC0.36□□□□□ -2.35
CDX1P47902 AL022718.1-201ENST00000412004 84 ntBASIC0.36□□□□□ -2.35
CDX1P47902 AC098934.3-201ENST00000430450 190 ntBASIC0.36□□□□□ -2.35
CDX1P47902 RNU7-113P-201ENST00000459273 62 ntBASIC0.36□□□□□ -2.35
CDX1P47902 AC107027.2-201ENST00000512197 115 ntBASIC0.36□□□□□ -2.35
CDX1P47902 AP003327.1-201ENST00000529684 127 ntBASIC0.36□□□□□ -2.35
CDX1P47902 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.36□□□□□ -2.35
CDX1P47902 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.36□□□□□ -2.35
CDX1P47902 MIRLET7D-201ENST00000362263 87 ntBASIC0.35□□□□□ -2.35
CDX1P47902 Y_RNA.52-201ENST00000362760 96 ntBASIC0.35□□□□□ -2.35
CDX1P47902 Y_RNA.171-201ENST00000363760 102 ntBASIC0.35□□□□□ -2.35
CDX1P47902 Y_RNA.337-201ENST00000365312 102 ntBASIC0.35□□□□□ -2.35
CDX1P47902 RNU6-47P-201ENST00000383866 107 ntBASIC0.35□□□□□ -2.35
CDX1P47902 Y_RNA.435-201ENST00000384095 112 ntBASIC0.35□□□□□ -2.35
CDX1P47902 SNORA50A-201ENST00000384225 134 ntBASIC0.35□□□□□ -2.35
CDX1P47902 RNU6-463P-201ENST00000384340 107 ntBASIC0.35□□□□□ -2.35
CDX1P47902 Y_RNA.489-201ENST00000384410 101 ntBASIC0.35□□□□□ -2.35
CDX1P47902 Y_RNA.567-201ENST00000384736 106 ntBASIC0.35□□□□□ -2.35
CDX1P47902 MIR518A1-201ENST00000385068 85 ntBASIC0.35□□□□□ -2.35
CDX1P47902 RNA5SP193-201ENST00000410353 107 ntBASIC0.35□□□□□ -2.35
CDX1P47902 RNU6-1086P-201ENST00000410930 100 ntBASIC0.35□□□□□ -2.35
CDX1P47902 RNU7-79P-201ENST00000516082 62 ntBASIC0.35□□□□□ -2.35
CDX1P47902 RNU6-1258P-201ENST00000516911 111 ntBASIC0.35□□□□□ -2.35
CDX1P47902 AC133485.4-201ENST00000561835 220 ntBASIC0.35□□□□□ -2.35
CDX1P47902 MIR6779-201ENST00000617283 64 ntBASIC0.35□□□□□ -2.35
CDX1P47902 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.35□□□□□ -2.35
CDX1P47902 SNORD114-23-201ENST00000363536 72 ntBASIC0.34□□□□□ -2.36
CDX1P47902 RNU6-818P-201ENST00000364837 108 ntBASIC0.34□□□□□ -2.36
CDX1P47902 RNY1P13-201ENST00000365030 105 ntBASIC0.34□□□□□ -2.36
CDX1P47902 MIR644A-201ENST00000385262 94 ntBASIC0.34□□□□□ -2.36
CDX1P47902 Y_RNA.588-201ENST00000391254 102 ntBASIC0.34□□□□□ -2.36
CDX1P47902 RNA5SP144-201ENST00000410846 116 ntBASIC0.34□□□□□ -2.36
CDX1P47902 RNU6-765P-201ENST00000516916 99 ntBASIC0.34□□□□□ -2.36
CDX1P47902 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC0.34□□□□□ -2.36
CDX1P47902 AC099654.10-201ENST00000640395 161 ntBASIC0.34□□□□□ -2.36
CDX1P47902 AC090625.1-201ENST00000357130 210 ntBASIC0.33□□□□□ -2.36
CDX1P47902 RNU6-349P-201ENST00000362402 107 ntBASIC0.33□□□□□ -2.36
CDX1P47902 RNU6-1082P-201ENST00000364574 107 ntBASIC0.33□□□□□ -2.36
CDX1P47902 RNU6-690P-201ENST00000365242 106 ntBASIC0.33□□□□□ -2.36
CDX1P47902 Y_RNA.357-201ENST00000365487 109 ntBASIC0.33□□□□□ -2.36
CDX1P47902 RNA5SP33-201ENST00000516687 98 ntBASIC0.33□□□□□ -2.36
CDX1P47902 DEFB131E-201ENST00000532329 154 ntBASIC0.33□□□□□ -2.36
CDX1P47902 AC022523.2-201ENST00000561045 150 ntBASIC0.33□□□□□ -2.36
CDX1P47902 AC009779.6-201ENST00000603972 165 ntBASIC0.33□□□□□ -2.36
CDX1P47902 AL353621.2-201ENST00000605340 133 ntBASIC0.33□□□□□ -2.36
CDX1P47902 AC243829.6-201ENST00000612652 106 ntBASIC0.33□□□□□ -2.36
CDX1P47902 MIR6844-201ENST00000637122 62 ntBASIC0.33□□□□□ -2.36
CDX1P47902 Y_RNA.144-201ENST00000363521 113 ntBASIC0.32□□□□□ -2.36
CDX1P47902 Y_RNA.205-201ENST00000364128 113 ntBASIC0.32□□□□□ -2.36
CDX1P47902 Y_RNA.233-201ENST00000364407 101 ntBASIC0.32□□□□□ -2.36
CDX1P47902 MIR193B-201ENST00000384907 83 ntBASIC0.32□□□□□ -2.36
CDX1P47902 AL512326.2-201ENST00000426359 151 ntBASIC0.32□□□□□ -2.36
CDX1P47902 MTATP6P21-201ENST00000440681 189 ntBASIC0.32□□□□□ -2.36
CDX1P47902 Y_RNA.697-201ENST00000516776 113 ntBASIC0.32□□□□□ -2.36
CDX1P47902 SNORA25.18-201ENST00000607153 114 ntBASIC0.32□□□□□ -2.36
CDX1P47902 AC010487.4-201ENST00000637027 61 ntBASIC0.32□□□□□ -2.36
CDX1P47902 Y_RNA.174-201ENST00000363781 105 ntBASIC0.31□□□□□ -2.36
CDX1P47902 VTRNA1-3-201ENST00000365645 89 ntBASIC0.31□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 271.4 ms