Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 Y_RNA.700-201ENST00000516806 100 ntBASIC0.59□□□□□ -2.31
TNFRSF4P43489 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.59□□□□□ -2.31
TNFRSF4P43489 MIR3658-201ENST00000636291 56 ntBASIC0.59□□□□□ -2.31
TNFRSF4P43489 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.58□□□□□ -2.32
TNFRSF4P43489 RNU6-369P-201ENST00000362515 102 ntBASIC0.58□□□□□ -2.32
TNFRSF4P43489 RNU6-682P-201ENST00000363843 106 ntBASIC0.58□□□□□ -2.32
TNFRSF4P43489 Y_RNA.240-201ENST00000364469 95 ntBASIC0.58□□□□□ -2.32
TNFRSF4P43489 Y_RNA.430-201ENST00000384081 110 ntBASIC0.58□□□□□ -2.32
TNFRSF4P43489 RNU6-588P-201ENST00000410281 105 ntBASIC0.58□□□□□ -2.32
TNFRSF4P43489 MIR18B-201ENST00000454574 71 ntBASIC0.58□□□□□ -2.32
TNFRSF4P43489 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.58□□□□□ -2.32
TNFRSF4P43489 MIR4676-201ENST00000583078 72 ntBASIC0.58□□□□□ -2.32
TNFRSF4P43489 AC020891.4-201ENST00000605745 93 ntBASIC0.58□□□□□ -2.32
TNFRSF4P43489 AC090425.1-201ENST00000610007 140 ntBASIC0.58□□□□□ -2.32
TNFRSF4P43489 RNU6-364P-201ENST00000384387 107 ntBASIC0.57□□□□□ -2.32
TNFRSF4P43489 MT-TF-201ENST00000387314 71 ntBASIC0.57□□□□□ -2.32
TNFRSF4P43489 AC244098.3-201ENST00000424803 96 ntBASIC0.57□□□□□ -2.32
TNFRSF4P43489 MIR3646-201ENST00000578301 84 ntBASIC0.57□□□□□ -2.32
TNFRSF4P43489 MIR4804-201ENST00000581683 73 ntBASIC0.57□□□□□ -2.32
TNFRSF4P43489 DNAJC19P2-201ENST00000593340 302 ntBASIC0.57□□□□□ -2.32
TNFRSF4P43489 AC004792.1-201ENST00000614523 137 ntBASIC0.57□□□□□ -2.32
TNFRSF4P43489 AC243829.3-201ENST00000622177 108 ntBASIC0.57□□□□□ -2.32
TNFRSF4P43489 MIR5087-201ENST00000635826 76 ntBASIC0.57□□□□□ -2.32
TNFRSF4P43489 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.56□□□□□ -2.32
TNFRSF4P43489 RNA5SP499-201ENST00000363982 119 ntBASIC0.56□□□□□ -2.32
TNFRSF4P43489 RNU6-690P-201ENST00000365242 106 ntBASIC0.56□□□□□ -2.32
TNFRSF4P43489 Y_RNA.785-201ENST00000384290 109 ntBASIC0.56□□□□□ -2.32
TNFRSF4P43489 MIR563-201ENST00000385080 79 ntBASIC0.56□□□□□ -2.32
TNFRSF4P43489 MIR938-201ENST00000401216 83 ntBASIC0.56□□□□□ -2.32
TNFRSF4P43489 RNA5SP222-201ENST00000411039 105 ntBASIC0.56□□□□□ -2.32
TNFRSF4P43489 MTATP6P21-201ENST00000440681 189 ntBASIC0.56□□□□□ -2.32
TNFRSF4P43489 RNU6-893P-201ENST00000458841 100 ntBASIC0.56□□□□□ -2.32
TNFRSF4P43489 RNU7-185P-201ENST00000459215 60 ntBASIC0.56□□□□□ -2.32
TNFRSF4P43489 RNA5SP121-201ENST00000516537 101 ntBASIC0.56□□□□□ -2.32
TNFRSF4P43489 AL662814.1-201ENST00000617364 121 ntBASIC0.56□□□□□ -2.32
TNFRSF4P43489 MIR6841-201ENST00000637129 72 ntBASIC0.56□□□□□ -2.32
TNFRSF4P43489 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.56□□□□□ -2.32
TNFRSF4P43489 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.56□□□□□ -2.32
TNFRSF4P43489 MIR30D-201ENST00000362283 70 ntBASIC0.55□□□□□ -2.32
TNFRSF4P43489 Y_RNA.272-201ENST00000364696 102 ntBASIC0.55□□□□□ -2.32
TNFRSF4P43489 RNU6-1318P-201ENST00000365389 103 ntBASIC0.55□□□□□ -2.32
TNFRSF4P43489 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.55□□□□□ -2.32
TNFRSF4P43489 SNORA18-201ENST00000384416 132 ntBASIC0.55□□□□□ -2.32
TNFRSF4P43489 Y_RNA.497-201ENST00000384447 98 ntBASIC0.55□□□□□ -2.32
TNFRSF4P43489 SNORD93-201ENST00000408813 74 ntBASIC0.55□□□□□ -2.32
TNFRSF4P43489 AL022718.1-201ENST00000412004 84 ntBASIC0.55□□□□□ -2.32
TNFRSF4P43489 AC098934.3-201ENST00000430450 190 ntBASIC0.55□□□□□ -2.32
TNFRSF4P43489 AC074198.2-201ENST00000508153 258 ntBASIC0.55□□□□□ -2.32
TNFRSF4P43489 RNU6-182P-201ENST00000516970 105 ntBASIC0.55□□□□□ -2.32
TNFRSF4P43489 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.55□□□□□ -2.32
TNFRSF4P43489 MIR924-201ENST00000638017 53 ntBASIC0.55□□□□□ -2.32
TNFRSF4P43489 SNORD18B-201ENST00000365659 72 ntBASIC0.54□□□□□ -2.32
TNFRSF4P43489 SNORA36.2-201ENST00000384004 127 ntBASIC0.54□□□□□ -2.32
TNFRSF4P43489 MIR125B2-201ENST00000385128 89 ntBASIC0.54□□□□□ -2.32
TNFRSF4P43489 MIR92A1-201ENST00000385233 78 ntBASIC0.54□□□□□ -2.32
TNFRSF4P43489 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.54□□□□□ -2.32
TNFRSF4P43489 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.54□□□□□ -2.32
TNFRSF4P43489 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.54□□□□□ -2.32
TNFRSF4P43489 RNA5SP236-201ENST00000516169 116 ntBASIC0.54□□□□□ -2.32
TNFRSF4P43489 RNU4-54P-201ENST00000516428 129 ntBASIC0.54□□□□□ -2.32
TNFRSF4P43489 RNU6-229P-201ENST00000516614 102 ntBASIC0.54□□□□□ -2.32
TNFRSF4P43489 RNU7-156P-201ENST00000517214 74 ntBASIC0.54□□□□□ -2.32
TNFRSF4P43489 RNU6-349P-201ENST00000362402 107 ntBASIC0.53□□□□□ -2.32
TNFRSF4P43489 Y_RNA.171-201ENST00000363760 102 ntBASIC0.53□□□□□ -2.32
TNFRSF4P43489 RNU4-11P-201ENST00000365287 132 ntBASIC0.53□□□□□ -2.32
TNFRSF4P43489 MIR573-201ENST00000384964 99 ntBASIC0.53□□□□□ -2.32
TNFRSF4P43489 Y_RNA.584-201ENST00000391090 114 ntBASIC0.53□□□□□ -2.32
TNFRSF4P43489 RNU6-447P-201ENST00000410293 104 ntBASIC0.53□□□□□ -2.32
TNFRSF4P43489 RNU6-1118P-201ENST00000410382 104 ntBASIC0.53□□□□□ -2.32
TNFRSF4P43489 RNU6-1076P-201ENST00000410397 104 ntBASIC0.53□□□□□ -2.32
TNFRSF4P43489 RNU6-355P-201ENST00000410427 104 ntBASIC0.53□□□□□ -2.32
TNFRSF4P43489 RNU6-791P-201ENST00000410467 104 ntBASIC0.53□□□□□ -2.32
TNFRSF4P43489 RNU6-705P-201ENST00000410601 104 ntBASIC0.53□□□□□ -2.32
TNFRSF4P43489 RNU6-1100P-201ENST00000410691 104 ntBASIC0.53□□□□□ -2.32
TNFRSF4P43489 RNA5SP144-201ENST00000410846 116 ntBASIC0.53□□□□□ -2.32
TNFRSF4P43489 RNU6-860P-201ENST00000410860 104 ntBASIC0.53□□□□□ -2.32
TNFRSF4P43489 RNU6-1217P-201ENST00000411276 104 ntBASIC0.53□□□□□ -2.32
TNFRSF4P43489 RNU6-785P-201ENST00000411324 104 ntBASIC0.53□□□□□ -2.32
TNFRSF4P43489 RNU7-56P-201ENST00000458744 62 ntBASIC0.53□□□□□ -2.32
TNFRSF4P43489 RNU7-102P-201ENST00000458948 62 ntBASIC0.53□□□□□ -2.32
TNFRSF4P43489 RNU7-113P-201ENST00000459273 62 ntBASIC0.53□□□□□ -2.32
TNFRSF4P43489 RNU6-240P-201ENST00000516098 97 ntBASIC0.53□□□□□ -2.32
TNFRSF4P43489 RNU7-121P-201ENST00000516604 62 ntBASIC0.53□□□□□ -2.32
TNFRSF4P43489 AC018659.1-201ENST00000551083 169 ntBASIC0.53□□□□□ -2.32
TNFRSF4P43489 AC141846.1-201ENST00000568348 142 ntBASIC0.53□□□□□ -2.32
TNFRSF4P43489 Y_RNA.757-201ENST00000578934 114 ntBASIC0.53□□□□□ -2.32
TNFRSF4P43489 U6.90-201ENST00000614007 104 ntBASIC0.53□□□□□ -2.32
TNFRSF4P43489 U6.70-201ENST00000620287 104 ntBASIC0.53□□□□□ -2.32
TNFRSF4P43489 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC0.52□□□□□ -2.33
TNFRSF4P43489 RNU6-151P-201ENST00000364158 107 ntBASIC0.52□□□□□ -2.33
TNFRSF4P43489 SNORD116-18-201ENST00000383961 92 ntBASIC0.52□□□□□ -2.33
TNFRSF4P43489 RNU6-733P-201ENST00000410759 104 ntBASIC0.52□□□□□ -2.33
TNFRSF4P43489 RNU4-83P-201ENST00000410863 133 ntBASIC0.52□□□□□ -2.33
TNFRSF4P43489 RNU6-1135P-201ENST00000411083 103 ntBASIC0.52□□□□□ -2.33
TNFRSF4P43489 RNU5E-3P-201ENST00000515913 68 ntBASIC0.52□□□□□ -2.33
TNFRSF4P43489 AC112693.2-201ENST00000556538 232 ntBASIC0.52□□□□□ -2.33
TNFRSF4P43489 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.52□□□□□ -2.33
TNFRSF4P43489 RNU6-403P-201ENST00000363163 104 ntBASIC0.51□□□□□ -2.33
TNFRSF4P43489 Y_RNA.270-201ENST00000364693 104 ntBASIC0.51□□□□□ -2.33
TNFRSF4P43489 RNU6-945P-201ENST00000383947 107 ntBASIC0.51□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 171.6 ms